Simulation

Simulation of neural activity in a tissue slice (©Blue Brain Project / EPFL ©2005 – 2019. All rights reserved.)

Digital reconstructions of brain tissue represent a snapshot of the anatomy and physiology of the brain at one moment in time. BBP simulations use mathematical models of individual neurons and synapses to compute the electrical activity of the network as it evolves over time. This requires a huge computational effort, only possible with large supercomputers. Simulations of larger volumes of tissue, at ever higher levels of detail, will need ever more powerful computing capabilities.

The BBP uses its digital reconstructions as the basis for a potentially unlimited range of simulations, each representing an in silico experiment. Researchers can measure the spontaneous electrical activity of the virtual tissue, apply stimulation protocols and measure the response, and manipulate the tissue in various ways (e.g. by “knocking out” cells with particular characteristics, by “lesioning” part of the circuit). In silico experiments can replicate past laboratory experiments – an important test for the reconstructions – or can explore new ground and suggest new experiments. In particular, simulation allows experiments that would be difficult or impossible in biological tissue or in living animals – for instance, experiments requiring simultaneous measurements from large numbers of neurons. Such experiments provide a new tool for researchers seeking to understand the causal relationships between events at different levels of brain organization. – for example, understanding on how changes in composition of the extra-cellular fluid (which impact the activity of synapses) affect the overall pattern of activity in the virtual tissue.

As digital reconstructions become larger, more detailed and more biologically accurate, the range of experiments they enable will grow. The Blue Brain Project is currently building neurorobotics tools in which brain simulations are coupled to simulated robots and a simulated environment, in a  “closed loop”. The new tools will make it possible to replicate cognitive and behavioural experiments in animals, where the animal’s sensory organs capture and encode information about its environment, and its brain generates a motor response. This approach will enable early in silico studies of the brain mechanisms underlying animal perception, cognition and behaviour.