Publications

2024

Scalable semantic 3D mapping of coral reefs with deep learning

J. Sauder; G. Banc-Prandi; A. Meibom; D. Tuia 

Methods In Ecology And Evolution. 2024-03-14. DOI : 10.1111/2041-210X.14307.

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Gene expression of Pocillopora damicornis coral larvae in response to acidification and ocean warming

Y. Sun; Y. Lan; N. Radecker; H. Sheng; G. Diaz-Pulido et al. 

Bmc Genomic Data. 2024-03-08. Vol. 25, num. 1, p. 28. DOI : 10.1186/s12863-024-01211-3.

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Spatial analysis of 10-year predicted risk and incident atherosclerotic cardiovascular disease: the CoLaus cohort

G. Jordan; D. Ridder; S. Joost; P. Vollenweider; M. Preisig et al. 

Scientific Reports. 2024. Vol. 14, num. 1, p. 4752 (2024). DOI : 10.1038/s41598-024-54900-5.

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The Presolar Grain Database. I. Silicon Carbide

T. Stephan; R. Trappitsch; P. Hoppe; A. M. Davis; M. Bose et al. 

Astrophysical Journal Supplement Series. 2024-02-01. Vol. 270, num. 2, p. 27. DOI : 10.3847/1538-4365/ad1102.

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Host-derived organic acids enable gut colonization of the honey bee symbiont Snodgrassella alvi

A. Quinn; Y. El Chazli; S. Escrig; J. Daraspe; N. Neuschwander et al. 

Nature Microbiology. 2024-01-15. DOI : 10.1038/s41564-023-01572-y.

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2023

Multiple genomic solutions for local adaptation in two closely related species (sheep and goats) facing the same climatic constraints

B. Benjelloun; K. Leempoel; F. Boyer; S. Stucki; I. Streeter et al. 

Molecular Ecology. 2023-12-27. DOI : 10.1111/mec.17257.

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Comparative Population Transcriptomics Provide New Insight into the Evolutionary History and Adaptive Potential of World Ocean Krill

M. Choquet; F. Lenner; A. Cocco; G. Toullec; E. Corre et al. 

Molecular Biology And Evolution. 2023-11-03. Vol. 40, num. 11, p. msad225. DOI : 10.1093/molbev/msad225.

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Genomics and conservation: Guidance from training to analyses and applications

L. M. Schiebelhut; A. S. Guillaume; A. Kuhn; R. M. Schweizer; E. E. Armstrong et al. 

Molecular Ecology Resources. 2023-11-15. Vol. 24, num. 2. DOI : 10.1111/1755-0998.13893.

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Fungal Planet description sheets: 1478-1549

P. W. Crous; E. R. Osieck; R. G. Shivas; Y. P. Tan; S. L. Bishop-Hurley et al. 

Persoonia. 2023-06-01. Vol. 50, p. 158-310. DOI : 10.3767/persoonia.2023.50.05.

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Symbiotic nutrient exchange enhances the long-term survival of cassiosomes, the autonomous stinging-cell structures of Cassiopea

G. Toullec; N. H. Lyndby; G. Banc-Prandi; C. Pogoreutz; C. Martin Olmos et al. 

mSphere. 2023-12-13. DOI : 10.1128/msphere.00322-23.

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Symbiotic nutrient cycling enables the long-term survival of Aiptasia in the absence of heterotrophic food sources

N. Rädecker; A. Meibom 

Peer Community Journal. 2023. Vol. 3, num. e48. DOI : 10.24072/pcjournal.281.

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Coupled carbon and nitrogen cycling regulates the cnidarian–algal symbiosis

N. Rädecker; S. Escrig; J. E. Spangenberg; C. R. Voolstra; A. Meibom 

Nature Communications. 2023. Vol. 14, num. 1, p. 6948. DOI : 10.1038/s41467-023-42579-7.

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Non-invasive investigation of the morphology and optical properties of the upside-down jellyfish Cassiopea with optical coherence tomography

N. H. Lyndby; S. Murthy; S. Bessette; S. L. Jakobsen; A. Meibom et al. 

Proceedings Of The Royal Society B-Biological Sciences. 2023-09-27. Vol. 290, num. 2007, p. 20230127. DOI : 10.1098/rspb.2023.0127.

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Stable isotope labeling and ultra-high-resolution NanoSIMS imaging reveal alpha-synuclein-induced changes in neuronal metabolism in vivo

S. Spataro; B. Maco; S. Escrig; L. Jensen; L. Polerecky et al. 

Acta Neuropathologica Communications. 2023-09-29. Vol. 11, num. 1, p. 157. DOI : 10.1186/s40478-023-01608-8.

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Diffusion timescale conundrum in contact metamorphism: Oxygen isotope and trace element profiles in dolomite

F. Begue; L. P. Baumgartner; A-S. Bouvier; S. Escrig; R. Lafay et al. 

Geochimica Et Cosmochimica Acta. 2023-10-01. Vol. 358, p. 93-107. DOI : 10.1016/j.gca.2023.08.010.

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Housing, street and health: a new systemic research framework

A. Pagani; D. P. Christie; V. Bourdon; C. Wall Gago; S. Joost et al. 

Buildings and Cities. 2023. Vol. 4, num. 1, p. 629-649. DOI : 10.5334/bc.298.

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First paleoproteome study of fossil fish otoliths and the pristine preservation of the biomineral crystal host

J. Stolarski; J. Drake; I. Coronado; A. R. Vieira; U. Radwanska et al. 

Scientific Reports. 2023-03-07. Vol. 13, num. 1, p. 3822. DOI : 10.1038/s41598-023-30537-8.

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Reliable uncertainties: Error correlation, rotated error bars, and linear regressions in three-isotope plots and beyond

T. Stephan; R. Trappitsch 

International Journal Of Mass Spectrometry. 2023-06-13. Vol. 491, p. 117053. DOI : 10.1016/j.ijms.2023.117053.

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Correlated cryo-SEM and CryoNanoSIMS imaging of biological tissue

A. Meibom; F. Plane; T. Cheng; G. Grandjean; O. Haldimann et al. 

Bmc Biology. 2023-06-07. Vol. 21, num. 1, p. 126. DOI : 10.1186/s12915-023-01623-0.

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Artificial intelligence and visual analytics in geographical space and cyberspace: Research opportunities and challenges

M. Chen; C. Claramunt; A. coltekin; X. Liu; P. Peng et al. 

Earth-Science Reviews. 2023-05-02. Vol. 241, p. 104438. DOI : 10.1016/j.earscirev.2023.104438.

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Correlative Light, Electron Microscopy and Raman Spectroscopy Workflow To Detect and Observe Microplastic Interactions with Whole Jellyfish

J. Caldwell; C. Loussert-Fonta; G. Toullec; N. H. Lyndby; B. Haenni et al. 

Environmental Science & Technology. 2023-04-14. DOI : 10.1021/acs.est.2c09233.

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Small area vulnerability, household food insecurity and child malnutrition in Medellin, Colombia: results from a repeated cross-sectional study

H-A. Santa-Ramírez; G-J. Otálvaro-Castro; S. Joost; H. Melgar-Quiñonez; U. Bilal et al. 

The Lancet Regional Health – Americas. 2023-05-26. Vol. 23, num. 100521, p. 1-10. DOI : 10.1016/j.lana.2023.100521.

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Rapid grain boundary diffusion in foraminifera tests biases paleotemperature records

A. Adams; D. Daval; L. P. Baumgartner; S. Bernard; T. Vennemann et al. 

Communications Earth & Environment. 2023-04-27. Vol. 4, num. 1, p. 144. DOI : 10.1038/s43247-023-00798-2.

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Excess labile carbon promotes diazotroph abundance in heat-stressed octocorals

N. Xiang; A. Meyer; C. Pogoreutz; N. Raedecker; C. R. R. Voolstra et al. 

Royal Society Open Science. 2023-03-15. Vol. 10, num. 3, p. 221268. DOI : 10.1098/rsos.221268.

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Molecular insights into the Darwin paradox of coral reefs from the sea anemone Aiptasia

G. Cui; M. K. Konciute; L. Ling; L. Esau; J. -B. Raina et al. 

Science Advances. 2023-03-17. Vol. 9, num. 11, p. eadf7108. DOI : 10.1126/sciadv.adf7108.

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The mesoglea buffers the physico-chemical microenvironment of photosymbionts in the upside-down jellyfish Cassiopea sp.

N. H. Lyndby; M. C. Murray; E. Trampe; A. Meibom; M. Kuhl 

Frontiers In Ecology And Evolution. 2023-03-27. Vol. 11, p. 1112742. DOI : 10.3389/fevo.2023.1112742.

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The Reef Environment Centralized InFormation System (RECIFS) : An integrated geo‐environmental database for coral reef research and conservation

O. Selmoni; G. Lecellier; V. Berteaux‐Lecellier; S. Joost 

Global Ecology and Biogeography. 2023-03-22. Vol. Early view. DOI : 10.1111/geb.13657.

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2022

“Exclusive” update: p-coumaroylation of lignin not restricted to commelinid monocots

P. Ramakrishna; I. Cesarino 

Plant Physiology. 2022-11-24. DOI : 10.1093/plphys/kiac536.

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Grain scans: fast X-ray fluorescence microscopy for high-throughput elemental mapping of rice seeds

P. Ramakrishna 

Plant Physiology. 2022-12-22. DOI : 10.1093/plphys/kiac598.

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Resonance ionization of zirconium

R. Trappitsch; D. Z. Shulaker; W-J. Ong; M. R. Savina; B. H. Isselhardt 

Journal of Radioanalytical and Nuclear Chemistry. 2022-10-13. Vol. 331, num. 12, p. 5199-5204. DOI : 10.1007/s10967-022-08581-x.

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The Height of Chitinous Ridges Alone Produces the Entire Structural Color Palette

H. K. Raut; Q. Ruan; C. Finet; V. Saranathan; J. K. Yang et al. 

Advanced Materials Interfaces. 2022-10-10. Vol. 9, num. 35, p. 2201419. DOI : 10.1002/admi.202201419.

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High-useful yield and new autoionizing state of resonantly ionized tungsten

D. Z. Shulaker; R. Trappitsch; M. R. R. Savina; B. Isselhardt 

Journal Of Analytical Atomic Spectrometry. 2022-12-30. DOI : 10.1039/d2ja00320a.

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Presence of algal symbionts affects denitrifying bacterial communities in the sea anemone Aiptasia coral model

N. Xiang; N. Rädecker; C. Pogoreutz; A. Cárdenas; A. Meibom et al. 

ISME Communications. 2022-10-28. Vol. 2, num. 1, p. 105. DOI : 10.1038/s43705-022-00190-9.

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Loosen up! How lignin manipulations affect biomass molecular assembly and deconstruction

P. Ramakrishna; I. Cesarino 

Plant Physiology. 2022-10-27. DOI : 10.1093/plphys/kiac503.

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Peeling back the layers: Raman imaging reveals microchemistry of tomato cuticle during development

P. Ramakrishna 

Plant Physiology. 2022-10-27.  p. kiac504. DOI : 10.1093/plphys/kiac504.

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Green fluorescent protein-like pigments optimise the internal light environment in symbiotic reef-building corals

E. Bollati; N. H. Lyndby; C. D’Angelo; M. Kuehl; J. Wiedenmann et al. 

Elife. 2022-07-08. Vol. 11, p. e73521. DOI : 10.7554/eLife.73521.

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Ammonium and Sulfate Assimilation Is Widespread in Benthic Foraminifera

C. LeKieffre; T. Jauffrais; J. M. Bernhard; H. L. Filipsson; C. Schmidt et al. 

Frontiers In Marine Science. 2022-07-20. Vol. 9, p. 861945. DOI : 10.3389/fmars.2022.861945.

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A roadmap to understanding diversity and function of coral reef-associated fungi

A. Roik; M. Reverter; C. Pogoreutz 

Fems Microbiology Reviews. 2022-06-23. Vol. 46, num. 6, p. fuac028. DOI : 10.1093/femsre/fuac028.

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Greater functional diversity and redundancy of coral endolithic microbiomes align with lower coral bleaching susceptibility

A. Cardenas; J-B. Raina; C. Pogoreutz; N. Raedecker; J. Bougoure et al. 

Isme Journal. 2022-07-15. Vol. 16, p. 2406–2420. DOI : 10.1038/s41396-022-01283-y.

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Oxygen diffusion in garnet: Experimental calibration and implications for timescales of metamorphic processes and retention of primary O isotopic signatures

M. R. Scicchitano; M. C. Jollands; I. S. Williams; J. Hermann; D. Rubatto et al. 

American Mineralogist. 2022-07-26. Vol. 107, num. 7, p. 1425-1441. DOI : 10.2138/am-2022-7970.

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High light quantity suppresses locomotion in symbiotic Aiptasia

N. F. Strumpen; N. Rädecker; C. Pogoreutz; A. Meibom; C. R. Voolstra 

Symbiosis. 2022-05-27. Vol. 86, p. 293–304. DOI : 10.1007/s13199-022-00841-4.

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Early precipitated micropyrite in microbialites: A time capsule of microbial sulfur cycling

J. Marin-Carbonne; M. -N. Decraene; R. Havas; L. Remusat; V. Pasquier et al. 

Geochemical Perspectives Letters. 2022-03-21. Vol. 21, p. 7-+. DOI : 10.7185/geochemlet.2209.

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Coral holobiont cues prime Endozoicomonas for a symbiotic lifestyle

C. Pogoreutz; C. A. Oakley; N. Radecker; A. Cardenas; G. Perna et al. 

Isme Journal. 2022-04-20. Vol. 16, p. 1883–1895. DOI : 10.1038/s41396-022-01226-7.

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Surface Analysis by Secondary Ion Mass Spectrometry (SIMS): Principles and Applications from Swiss Laboratories

J. M. Carbonne; A. Kiss; A-S. Bouvier; A. Meibom; L. Baumgartner et al. 

Chimia. 2022-02-01. Vol. 76, num. 1-2, p. 26-33. DOI : 10.2533/chimia.2022.26.

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Intrinsically High Capacity of Animal Cells From a Symbiotic Cnidarian to Deal With Pro-Oxidative Conditions

P. Cotinat; C. Fricano; G. Toullec; E. Roettinger; S. Barnay-Verdier et al. 

Frontiers In Physiology. 2022-02-10. Vol. 13, p. 819111. DOI : 10.3389/fphys.2022.819111.

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Exocyst function and specificity during Casparian strip formation-insights via a gene-edited endodermis

P. Ramakrishna; M. Somssich 

Plant Physiology. 2022-03-08.  p. kiac101. DOI : 10.1093/plphys/kiac101.

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Contrasting Microbiome Dynamics of Putative Denitrifying Bacteria in Two Octocoral Species Exposed to Dissolved Organic Carbon (DOC) and Warming

N. Xiang; C. Hassenrück; C. Pogoreutz; N. Rädecker; S. M. Simancas-Giraldo et al. 

Applied and Environmental Microbiology. 2022-01-25. Vol. 88, num. 2, p. e01886-21. DOI : 10.1128/AEM.01886-21.

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Diffusion anisotropy of Ti in zircon and implications for Ti-in-zircon thermometry

E. Bloch; M. Jollands; P. Tollan; F. Plane; A-S. Bouvier et al. 

Earth and Planetary Science Letters. 2022-01-18. Vol. 578, num. 19, p. 117317. DOI : 10.1016/j.epsl.2021.117317.

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Heat stress reduces the contribution of diazotrophs to coral holobiont nitrogen cycling

N. Rädecker; C. Pogoreutz; H. M. Gegner; A. Cárdenas; G. Perna et al. 

The ISME Journal. 2022. Vol. 16, p. 1110–1118. DOI : 10.1038/s41396-021-01158-8.

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Kleptoplast distribution, photosynthetic efficiency and sequestration mechanisms in intertidal benthic foraminifera

B. Jesus; T. Jauffrais; E. C. L. Trampe; J. W. Goessling; C. Lekieffre et al. 

Isme Journal. 2022. Vol. 16, p. 822–832. DOI : 10.1038/s41396-021-01128-0.

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Slow and steady wins the race: contrasted phylogeographic signatures in two Alpine amphibians

C. Dufresenes; N. Rodrigues; R. Savary 

Integrative Zoology. 2022. Vol. 17, num. 1, p. 181-190. DOI : 10.1111/1749-4877.12518.

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2021

Species-specific foraminiferal ultrastructures modulate surfaces available for diagenesis

D. G. Cisneros Lazaro; A. Adams; J. Guo; S. Bernard; D. Daval et al. 

2021.  p. 274-275. DOI : 10.1017/S1431927621001550.

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Coalescence and directed anisotropic growth of starch granule initials in subdomains of Arabidopsis thaliana chloroplasts

L. Burgy; S. Eicke; C. Kopp; C. Jenny; K. J. Lu et al. 

Nature Communications. 2021-11-26. Vol. 12, num. 1, p. 6944. DOI : 10.1038/s41467-021-27151-5.

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Highly Variable and Non-complex Diazotroph Communities in Corals From Ambient and High CO2 Environments

L. Geissler; V. Meunier; N. Radecker; G. Perna; R. Rodolfo-Metalpa et al. 

Frontiers In Marine Science. 2021-10-28. Vol. 8, p. 754682. DOI : 10.3389/fmars.2021.754682.

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Microbes support enhanced nitrogen requirements of coral holobionts in a high CO 2 environment

V. Meunier; L. Geissler; S. Bonnet; N. Rädecker; G. Perna et al. 

Molecular Ecology. 2021-09-02. Vol. 30, num. 22, p. 5888-5899. DOI : 10.1111/mec.16163.

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Photosynthesis from stolen chloroplasts can support sea slug reproductive fitness

P. Cartaxana; F. Rey; C. LeKieffre; D. Lopes; C. Hubas et al. 

Proceedings Of The Royal Society B-Biological Sciences. 2021-09-29. Vol. 288, num. 1959, p. 20211779. DOI : 10.1098/rspb.2021.1779.

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Integrating environmental variability to broaden the research on coral responses to future ocean conditions

M. Ziegler; A. Anton; S. G. Klein; N. Radecker; N. R. Geraldi et al. 

Global Change Biology. 2021-09-03. Vol. 27, num. 21, p. 5532-5546. DOI : 10.1111/gcb.15840.

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Following spatial A beta aggregation dynamics in evolving Alzheimer’s disease pathology by imaging stable isotope labeling kinetics

W. Michno; K. M. Stringer; T. Enzlein; M. K. Passarelli; S. Escrig et al. 

Science Advances. 2021-06-01. Vol. 7, num. 25, p. eabg4855. DOI : 10.1126/sciadv.abg4855.

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Nitrogen fixation and denitrification activity differ between coral- and algae-dominated Red Sea reefs

Y. C. El-Khaled; F. Roth; N. Rädecker; A. Tilstra; D. B. Karcher et al. 

Scientific Reports. 2021-06-03. Vol. 11, num. 1, p. 11820. DOI : 10.1038/s41598-021-90204-8.

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Relative abundance of nitrogen cycling microbes in coral holobionts reflects environmental nitrate availability

A. Tilstra; F. Roth; Y. C. El-Khaled; C. Pogoreutz; N. Rädecker et al. 

Royal Society Open Science. 2021-06-02. Vol. 8, num. 6, p. 201835. DOI : 10.1098/rsos.201835.

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Multimodal host–guest complexation for efficient and stable perovskite photovoltaics

H. Zhang; F. T. Eickemeyer; Z. Zhou; M. Mladenović; F. Jahanbakhshi et al. 

Nature Communications. 2021-06-07. Vol. 12, num. 1, p. 3383. DOI : 10.1038/s41467-021-23566-2.

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Fast and pervasive transcriptomic resilience and acclimation of extremely heat-tolerant coral holobionts from the northern Red Sea

R. Savary; D. J. Barshis; C. R. Voolstra; A. Cardenas; N. R. Evensen et al. 

Proceedings Of The National Academy Of Sciences Of The United States Of America. 2021-05-11. Vol. 118, num. 19, p. e2023298118. DOI : 10.1073/pnas.2023298118.

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Surface Topography, Bacterial Carrying Capacity, and the Prospect of Microbiome Manipulation in the Sea Anemone Coral Model Aiptasia

R. M. Costa; A. Cardenas; C. Loussert-Fonta; G. Toullec; A. Meibom et al. 

Frontiers In Microbiology. 2021-04-08. Vol. 12, p. 637834. DOI : 10.3389/fmicb.2021.637834.

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High plasticity of nitrogen fixation and denitrification of common coral reef substrates in response to nitrate availability

Y. C. El-Khaled; R. Nafeh; F. Roth; N. Rädecker; D. B. Karcher et al. 

Marine Pollution Bulletin. 2021-05-14. Vol. 168, p. 112430. DOI : 10.1016/j.marpolbul.2021.112430.

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Nutrient pollution enhances productivity and framework dissolution in algae- but not in coral-dominated reef communities

F. Roth; Y. C. El-Khaled; D. B. Karcher; N. Rädecker; S. Carvalho et al. 

Marine Pollution Bulletin. 2021-05-10. Vol. 168, p. 1-10, 112444. DOI : 10.1016/j.marpolbul.2021.112444.

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Heat stress destabilizes symbiotic nutrient cycling in corals

N. Rädecker; C. Pogoreutz; H. M. Gegner; A. Cárdenas; F. Roth et al. 

Proceedings of the National Academy of Sciences. 2021-02-02. Vol. 118, num. 5, p. e2022653118. DOI : 10.1073/pnas.2022653118.

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A modern scleractinian coral with a two-component calcite–aragonite skeleton

J. Stolarski; I. Coronado; J. G. Murphy; M. V. Kitahara; K. Janiszewska et al. 

Proceedings of the National Academy of Sciences. 2021. Vol. 118, num. 3, p. e2013316117. DOI : 10.1073/pnas.2013316117.

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2020

Responses of reef bioindicators to recent temperature anomalies in distinct areas of the North Ari and Rasdhoo atolls (Maldives)

V. Beccari; S. Spezzaferri; S. Stainbank; P. Hallock; D. Basso et al. 

Ecological Indicators. 2020. Vol. 112, p. 106128. DOI : 10.1016/j.ecolind.2020.106128.

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Effect of temperature and feeding on carbon budgets and O2 dynamics in Pocillopora damicornis

N. Lyndby; J. Holm; D. Wangpraseurt; R. Grover; C. Rottier et al. 

Marine Ecology Progress Series. 2020-10-15. Vol. 652, p. 49-62. DOI : 10.3354/meps13474.

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A Closing Window of Opportunity to Save a Unique Marine Ecosystem

K. Kleinhaus; C. R. Voolstra; A. Meibom; Y. Amitai; H. Gildor et al. 

Frontiers In Marine Science. 2020-12-15. Vol. 7, p. 615733. DOI : 10.3389/fmars.2020.615733.

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Amoebocytes facilitate efficient carbon and nitrogen assimilation in the Cassiopea -Symbiodiniaceae symbiosis

N. H. Lyndby; N. Rädecker; S. Bessette; L. H. Søgaard Jensen; S. Escrig et al. 

Proceedings of the Royal Society B: Biological Sciences. 2020-12-16. Vol. 287, num. 1941, p. 20202393. DOI : 10.1098/rspb.2020.2393.

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Heterotrophic Foraminifera Capable of Inorganic Nitrogen Assimilation

C. Bird; C. LeKieffre; T. Jauffrais; A. Meibom; E. Geslin et al. 

Frontiers In Microbiology. 2020-12-03. Vol. 11, p. 604979. DOI : 10.3389/fmicb.2020.604979.

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High summer temperatures amplify functional differences between coral‐ and algae‐dominated reef communities

F. Roth; N. Rädecker; S. Carvalho; C. M. Duarte; V. Saderne et al. 

Ecology. 2020-10-17.  p. e03226. DOI : 10.1002/ecy.3226.

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Taking the pulse of volcanic eruptions using plagioclase glomerocrysts

A. McCarthy; C. Chelle-Michou; J. D. Blundy; P. Vonlanthen; A. Meibom et al. 

Earth And Planetary Science Letters. 2020-12-15. Vol. 552, p. 116596. DOI : 10.1016/j.epsl.2020.116596.

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In situ eutrophication stimulates dinitrogen fixation, denitrification, and productivity in Red Sea coral reefs

Y. El-Khaled; F. Roth; A. Tilstra; N. Rädecker; D. Karcher et al. 

Marine Ecology Progress Series. 2020-07-09. Vol. 645, p. 55-66. DOI : 10.3354/meps13352.

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Correlation of fluorescence microscopy, electron microscopy, and NanoSIMS stable isotope imaging on a single tissue section

C. Loussert-Fonta; G. Toullec; A. A. Paraecattil; Q. Jeangros; T. Krueger et al. 

Communications Biology. 2020-07-09. Vol. 3, num. 1, p. 362. DOI : 10.1038/s42003-020-1095-x.

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Using Modern Conservation Tools for Innovative Management of Coral Reefs: The MANACO Consortium

O. Selmoni; G. Lecellier; L. Ainley; A. Collin; R. Doucet et al. 

Frontiers In Marine Science. 2020-07-21. Vol. 7, p. 609. DOI : 10.3389/fmars.2020.00609.

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Sub-cellular imaging shows reduced photosynthetic carbon and increased nitrogen assimilation by the non-native endosymbiontDurusdinium trenchiiin the model cnidarian Aiptasia

A. E. Sproles; C. A. Oakley; T. Krueger; A. R. Grossman; V. M. Weis et al. 

Environmental Microbiology. 2020-07-21. Vol. 22, num. 9, p. 3741-3753. DOI : 10.1111/1462-2920.15142.

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Functional kleptoplasts intermediate incorporation of carbon and nitrogen in cells of the Sacoglossa sea slug Elysia viridis

S. Cruz; C. LeKieffre; P. Cartaxana; C. Hubas; N. Thiney et al. 

Scientific Reports. 2020-06-29. Vol. 10, num. 1, p. 10548. DOI : 10.1038/s41598-020-66909-7.

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High rates of carbon and dinitrogen fixation suggest a critical role of benthic pioneer communities in the energy and nutrient dynamics of coral reefs

F. Roth; D. B. Karcher; N. Rädecker; S. Hohn; S. Carvalho et al. 

Functional Ecology. 2020-07-23. Vol. 34, num. 9, p. 1991-2004. DOI : 10.1111/1365-2435.13625.

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Heterotrophy in the earliest gut: a single-cell view of heterotrophic carbon and nitrogen assimilation in sponge-microbe symbioses

L. Rix; M. Ribes; R. Coma; M. T. Jahn; J. M. de Goeij et al. 

Isme Journal. 2020-06-29. Vol. 14, p. 2554–2567. DOI : 10.1038/s41396-020-0706-3.

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Ammonium is the preferred source of nitrogen for planktonic foraminifer and their dinoflagellate symbionts

C. LeKieffre; H. J. Spero; J. S. Fehrenbacher; A. D. Russell; H. Ren et al. 

Proceedings Of The Royal Society B-Biological Sciences. 2020-06-24. Vol. 287, num. 1929, p. 20200620. DOI : 10.1098/rspb.2020.0620.

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Combined deletion of Glut1 and Glut3 impairs lung adenocarcinoma growth

C. Contat; P-B. Ancey; N. Zangger; S. Sabatino; J. Pascual et al. 

Elife. 2020-06-23. Vol. 9, p. e53618. DOI : 10.7554/eLife.53618.

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Standardized short‐term acute heat stress assays resolve historical differences in coral thermotolerance across microhabitat reef sites

C. R. Voolstra; C. Buitrago‐López; G. Perna; A. Cárdenas; B. C. C. Hume et al. 

Global Change Biology. 2020-06-22. Vol. 26, p. 4328-4343. DOI : 10.1111/gcb.15148.

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Simultaneous Measurements of Dinitrogen Fixation and Denitrification Associated With Coral Reef Substrates: Advantages and Limitations of a Combined Acetylene Assay

Y. C. El-Khaled; F. Roth; N. Rädecker; N. Kharbatia; B. H. Jones et al. 

Frontiers in Marine Science. 2020-06-11. Vol. 7, p. 411. DOI : 10.3389/fmars.2020.00411.

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Photic stress on coral reefs in the Maldives: The Amphistegina bleaching index

S. Stainbank; S. Spezzaferri; V. Beccari; P. Hallock; A. Adams et al. 

Ecological Indicators. 2020-06-01. Vol. 113, p. 106257. DOI : 10.1016/j.ecolind.2020.106257.

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Tracking the cargo of extracellular symbionts into host tissues with correlated electron microscopy and nanoscale secondary ion mass spectrometry imaging

S. K. Cohen; M-S. Aschtgen; J. B. Lynch; S. Koehler; F. Chen et al. 

Cellular Microbiology. 2020-04-01. Vol. 22, num. 4, p. e13177. DOI : 10.1111/cmi.13177.

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Intracellular competition for nitrogen controls dinoflagellate population density in corals

T. Krueger; N. Horwitz; J. Bodin; M-E. Giovani; S. Escrig et al. 

Proceedings Of The Royal Society B-Biological Sciences. 2020-03-11. Vol. 287, num. 1922, p. 20200049. DOI : 10.1098/rspb.2020.0049.

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Science, Diplomacy, and the Red Sea’s Unique Coral Reef: It’s Time for Action

K. Kleinhaus; A. Al-Sawalmih; D. J. Barshis; A. Genin; L. N. Grace et al. 

Frontiers In Marine Science. 2020-02-26. Vol. 7, p. 90. DOI : 10.3389/fmars.2020.00090.

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Subcellular Chemical Imaging: New Avenues in Cell Biology

J. Decelle; G. Veronesi; B. Gallet; H. Stryhanyuk; P. Benettoni et al. 

Trends In Cell Biology. 2020-03-01. Vol. 30, num. 3, p. 173-188. DOI : 10.1016/j.tcb.2019.12.007.

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Ubiquitous macropinocytosis in anthozoans

P. Ganot; E. Tambutté; N. Caminiti-Segonds; G. Toullec; D. Allemand et al. 

eLife. 2020-02-10. Vol. 9, p. e50022. DOI : 10.7554/eLife.50022.

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A method to disentangle and quantify host anabolic turnover in photosymbiotic holobionts with subcellular resolution

E. M. Gibbin; G. Banc-Prandi; M. Fine; A. Comment; A. Meibom 

Communications Biology. 2020-01-08. Vol. 3, num. 1, p. 14. DOI : 10.1038/s42003-019-0742-6.

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2019

Copper impact on Red Sea Stylophora Pistillata and investigations on multi-xenobiotic resistance activity

N. Deschamps 

2019-10-05.

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The colder the better. A correlative workflow combining cryo-preparation, fluorescence & electron microscopies with NanoSIMS

C. Loussert; G. D. Toullec; T. Krueger; A. Meibom 

89th IUVSTA Workshop, Zakopane, Poland, May 19-24, 2019.

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Sample preparation for CryoNanoSIMS

L. H. S. Jensen; T. Cheng; F. O. V. Plane; S. Escrig; A. Comment et al. 

89th IUVSTA Workshop. Biological and soft matter sample preparation for high resolution imaging by high vacuum techniques, Zakopane, Poland, May 19-24, 2019.

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The “language” of endosymbiotic partners. “A correlative workflow combining cryo-preparation, fluorescence/electron microscopy, and NanoSIMS imaging to “listen” to the molecular and metabolic dialogue between partners in symbiotic corals”

C. Loussert; G. D. Toullec; A. A. Paraecattil; T. Krueger; A. Meibom 

2019. Gordon Research Conference: Animal-Microbe Symbioses as Nested Ecosystems, West Dover, VT, USA, June 16-21, 2019.

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Role of photosymbiosis in the Late Triassic expansion of shallow-water Scleractinia

K. Frankowiak; X. T. Wang; D. Signam; A. M. Gothmann; M. V. Kitahara et al. 

2019. 13th International Symposium on Fossil Cnidaria and Porifera 2019, Modena, Italy, September 3-6, 2019.

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From the product to the process: Fine-scale skeletal structures of scleractinian corals and their relevance to biomineralization models, geochemical sampling strategies, and phylogenetic reconstructions

J. Stolarski; I. Coronado; T. Krueger; A. Meibom 

2019. 13th International Symposium on Fossil Cnidaria and Porifera 2019, Modena, Italy, September 3-6, 2019.

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Post-mortem recrystallization of biogenic amorphous calcium carbonate and crystal tailoring by the inherited macromolecular framework

J. Stolarski; I. Coronado; G. Luquet; M. Potocka; M. Mazur et al. 

2019. 15th International Symposium on Biomineralization, Munich, Germany, September 9-13, 2019.

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Sub-cellular stable isotopic imaging of metabolic interactions in symbiotic corals

A. Meibom 

2019. InterUniversity Institute of Marine Sciences, 50th anniversary symposium, Eilat, Israel, October 23, 2019.

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