Transcriptome analysis of the adult Drosophila gut response to oral infection with Ecc15

Transcriptome analysis of the gut response to oral infection with Erwinia carotovora 15 

This is the web supplement to Buchon et al. Cell Host & Microbe 2009 . The site includes all of the raw data altogether with the .cel files. The site also offers access to the underlying numeric data used to calculate gene expression patterns presented in the papers. These arrays are based on Drosgenome 2.0 design.

 

Choose from the following options: 

• Model of the Drosophila response to gut infection
• Raw Data and assay description
  • cel files from the analysis
  • Array description / MIAME compliant files

• Processed data (Excel files)

• • Fully processed data for only the genes modulated by at least 2 folds

The data are in fold induction, all replicates are averaged, and the values are corrected to sucrose control condition of the same time point. This file can be saved on your computer and opened with Excel or an equivalent spreadsheet.

• • Fully processed table

The data are in fold induction, all replicates are averaged, and the values are corrected to sucrose control condition of the same time point. This file can be saved on your computer and opened with Excel or an equivalent spreadsheet.

• • A selection of  some genes up-regulated upon Ecc15 ingestion

(corresponding to Table 1)

• • List of genes up-regulated by Ecc15 and positively regulated by Rel

(corresponding to Table S3)

• • stress genes up-regulated upon Ecc15 ingestion

(corresponding to Table S4)

• • epithelium renewal genes up-regulated upon Ecc15 ingestion

(corresponding to Table S5)

• • Expression profile of gut genes up-regulated upon Ecc15 ingestion

(corresponding to Table S6)

• • Expression profile of gut genes down-regulated upon Ecc15 ingestion

(corresponding to Table S7)

• Methods

Complete Materials and Methods Used for microarray analysis

• Contacts:

Please address your questions to: [email protected]