Publications

Highlight:

The true shape of dendritic spines – December 2020

Using cryo fixation, the BioEM facility shows how dendritic spines are altered by chemical fixation. The dendritic spine is the site where the majority of  excitatory connections are found in the adult brain. There size and shape are important determinants of their function.  A detailed morphological analysis now published in eLife shows few changes, however, cryo-fixed spines have significantly thinner necks.

TEM in Parkinson’s disease

The group of Hilal Lashuel publishes an extensive study in the journal PNAS in which the progression of Lewy body formation is tracked in cells. This includes transmission electron microscopy with immunocytochemistry. See the EPFL news here. The research article can be viewed here.

Block face scanning EM in Alzheimer’s Disease

A study lead by Gilles Bonvento (Paris) explores astrocytic metabolism and mechanistic link that connects defective glycolysis in astrocytes to impaired l-serine production and reduced neuronal function. Supplementation with L-serine in a mouse model of Alzheimer’s restores cognitive deficits. This study used the block-face scanning electron microscopy services offered by the BioEM Facility. The study is published in the journal Cell Metabolism, and can be viewed here.

2025

Membrane mechanics dictate axonal pearls-on-a-string morphology and function

J. M. Griswold; M. Bonilla-Quintana; R. Pepper; C. T. Lee; S. Raychaudhuri et al. 

Nature neuroscience. 2025. Vol. 28, num. 1, p. 49 – 61. DOI : 10.1038/s41593-024-01813-1.

2024

Mechanisms of axoneme and centriole elimination in Naegleria gruberi

A. Woglar; C. Busso; G. Garcia Rodriguez; F. Douma; M. Croisier et al. 

EMBO REPORTS. 2024. DOI : 10.1038/s44319-024-00329-w.

Capsular Polysaccharide Restrains Type VI Secretion in Acinetobacter baumannii

N. O. Flaugnatti; L. Bader; M-C. Croisier-Coeytaux; M. Blokesch 

2024

2023

Centriole elimination during Caenorhabditis elegans oogenesis initiates with loss of the central tube protein SAS-1

M. Pierron; A. Woglar; C. Busso; K. Jha; T. Mikeladze-Dvali et al. 

Embo Journal. 2023. Vol. 42, num. 24. DOI : 10.15252/embj.2023115076.

Correlative light and volume electron microscopy to study brain development

S. Hayashi; N. Ohno; G. Knott; Z. Molnar 

Microscopy. 2023. DOI : 10.1093/jmicro/dfad002.

2022

A subpopulation of cortical VIP-expressing interneurons with highly dynamic spines

C. Georgiou; V. Kehayas; K. S. Lee; F. Brandalise; D. A. Sahlender et al. 

Communications Biology. 2022. Vol. 5, num. 1, p. 352. DOI : 10.1038/s42003-022-03278-z.

Cryogenic electron tomography to determine thermodynamic quantities for nanoparticle dispersions

Q. Ong; T. Mao; N. I. Anaraki; C. Malinverni; X. Xu et al. 

Materials Horizons. 2022. Vol. 9, num. 1, p. 303 – 311. DOI : 10.1039/d1mh01461g.

2021

Nuclear and cytoplasmic huntingtin inclusions exhibit distinct biochemical composition, interactome and ultrastructural properties

N. Riguet; A-L. Mahul-Mellier; N. Maharjan; J. Burtscher; M. Croisier et al. 

Nature Communications. 2021. Vol. 12, num. 1, p. 6579. DOI : 10.1038/s41467-021-26684-z.

A highly potent antibody effective against SARS-CoV-2 variants of concern

C. Fenwick; P. Turelli; L. Perez; C. Pellaton; L. Esteves-Leuenberger et al. 

Cell Reports. 2021. Vol. 37, num. 2, p. 109814. DOI : 10.1016/j.celrep.2021.109814.

Maturation of Complex Synaptic Connections of Layer 5 Cortical Axons in the Posterior Thalamic Nucleus Requires SNAP25

S. Hayashi; A. Hoerder-Suabedissen; E. Kiyokage; C. Maclachlan; K. Toida et al. 

Cerebral Cortex. 2021. Vol. 31, num. 5, p. 2625 – 2638. DOI : 10.1093/cercor/bhaa379.

3D Ultrastructure of Synaptic Inputs to Distinct GABAergic Neurons in the Mouse Primary Visual Cortex

Y-S. Hwang; C. Maclachlan; J. Blanc; A. Dubois; C. C. H. Petersen et al. 

Cerebral Cortex. 2021. Vol. 31, num. 5, p. 2610 – 2624. DOI : 10.1093/cercor/bhaa378.

Mitofusin-2 in nucleus accumbens regulates anxiety and depression-like behaviors through mitochondrial and neuronal actions

E. Gebara; O. Zanoletti; S. Ghosal; J. Grosse; B. L. Schneider et al. 

Biological Psychiatry. 2021. Vol. 89, num. 11, p. 1024 – 1026. DOI : 10.1016/j.biopsych.2020.12.003.

Toward Biophysical Mechanisms of Neocortical Computation after 50 Years of Barrel Cortex Research

C. C. H. Petersen; G. W. Knott; A. Holtmaat; F. Schuermann 

Function. 2021. Vol. 2, num. 1, p. zqaa046. DOI : 10.1093/function/zqaa046.

2020

Ultrastructural comparison of dendritic spine morphology preserved with cryo and chemical fixation

H. Tamada; J. Blanc; N. Korogod; C. C. Petersen; G. W. Knott 

Elife. 2020. Vol. 9, p. e56384. DOI : 10.7554/eLife.56384.

Gas cluster ion beam SEM for imaging of large tissue samples with 10 nm isotropic resolution

K. J. Hayworth; D. Peale; M. Januszewski; G. W. Knott; Z. Lu et al. 

Nature Methods. 2020. Vol. 17, num. 1, p. 68 – 71. DOI : 10.1038/s41592-019-0641-2.

Mitochondrial RNA granules are fluid condensates positioned by membrane dynamics

T. Rey; S. Zaganelli; E. Cuillery; E. Vartholomaiou; M. Croisier et al. 

Nature Cell Biology. 2020. Vol. 22, p. 1180 – 1186. DOI : 10.1038/s41556-020-00584-8.

Nano-imaging trace elements at organelle levels in substantia nigra overexpressing alpha-synuclein to model Parkinson’s disease

L. Lemelle; A. Simionovici; P. Colin; G. Knott; S. Bohic et al. 

Communications Biology. 2020. Vol. 3, num. 1, p. 364. DOI : 10.1038/s42003-020-1084-0.

Combined deletion of Glut1 and Glut3 impairs lung adenocarcinoma growth

C. Contat; P-B. Ancey; N. Zangger; S. Sabatino; J. Pascual et al. 

Elife. 2020. Vol. 9, p. e53618. DOI : 10.7554/eLife.53618.

Dysfunction of homeostatic control of dopamine by astrocytes in the developing prefrontal cortex leads to cognitive impairments

F. Petrelli; G. Dallerac; L. Pucci; C. Cali; T. Zehnder et al. 

Molecular Psychiatry. 2020. Vol. 25, num. 4, p. 732 – 749. DOI : 10.1038/s41380-018-0226-y.

Somatostatin enhances visual processing and perception by suppressing excitatory inputs to parvalbumin-positive interneurons in V1

Y-H. Song; Y-S. Hwang; K. Kim; H-R. Lee; J-H. Kim et al. 

Science Advances. 2020. Vol. 6, num. 17, p. eaaz0517. DOI : 10.1126/sciadv.aaz0517.

Impairment of Glycolysis-Derived L-Serine Production in Astrocytes Contributes to Cognitive Deficits in Alzheimer’s Disease

J. Le Douce; M. Maugard; J. Veran; M. Matos; P. Jego et al. 

Cell Metabolism. 2020. Vol. 31, num. 3, p. 503 – 517.e8. DOI : 10.1016/j.cmet.2020.02.004.

The process of Lewy body formation, rather than simply α-synuclein fibrillization, is one of the major drivers of neurodegeneration

A-L. Mahul-Mellier; J. Burtscher; N. Maharjan; L. Weerens; M. Croisier et al. 

Proceedings of the National Academy of Sciences of United States of America. 2020.  p. 201913904. DOI : 10.1073/pnas.1913904117.

Voxel2Mesh: 3D Mesh Model Generation from Volumetric Data

P. U. Wickramasinghe; E. Remelli; G. Knott; P. Fua 

2020. International Conference On Medical Image Computing & Computer Assisted Intervention (MICCAI), Lima, Peru, 4-8 OCTOBER 2020.

2019

Altered interplay between endoplasmic reticulum and mitochondria in Charcot-Marie-Tooth type 2A neuropathy

N. Bernard-Marissal; G. van Hameren; M. Juneja; C. Pellegrino; L. Louhivuori et al. 

Proceedings Of The National Academy Of Sciences Of The United States Of America. 2019. Vol. 116, num. 6, p. 2328 – 2337. DOI : 10.1073/pnas.1810932116.

2018

NeuroMorph: A Software Toolset for 3D Analysis of Neurite Morphology and Connectivity

A. Jorstad; J. Blanc; G. Knott 

Frontiers in Neuroanatomy. 2018. Vol. 12, p. 59. DOI : 10.3389/fnana.2018.00059.

2016

Centriolar CPAP/SAS-4 Imparts Slow Processive Microtubule Growth

A. Sharma; A. Aher; N. J. Dynes; D. Frey; E. A. Katrukha et al. 

Developmental Cell. 2016. Vol. 37, num. 4, p. 362 – 376. DOI : 10.1016/j.devcel.2016.04.024.

2015

NanoSIMS analysis of an isotopically labelled organometallic ruthenium(II) drug to probe its distribution and state in vitro

R. F. S. Lee; S. Escrig; M. Croisier; S. Clerc-Rosset; G. W. Knott et al. 

Chemical Communications. 2015. Vol. 51, num. 92, p. 16486 – 16489. DOI : 10.1039/c5cc06983a.

NanoSIMS analysis of an isotopically labelled organometallic ruthenium(II) drug to probe its distribution and state in vitro

R. F. S. Lee; S. Escrig; M. Croisier; S. Clerc-Rosset; G. Knott et al. 

Chemical Communications. 2015. Vol. 51, num. 92, p. 16577 – 16577. DOI : 10.1039/c5cc90487k.