Recent Publications

Recent Journal Papers

Host cell CRISPR genomics and modelling reveal shared metabolic vulnerabilities in the intracellular development of Plasmodium falciparum and related hemoparasites

M. Maurizio; M. Masid; K. Woods; R. Caldelari; J. G. Doench et al. 

Nature communications. 2024. Vol. 15, num. 1. DOI : 10.1038/s41467-024-50405-x.

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Pseudomonas aeruginosa faces a fitness trade-off between mucosal colonization and antibiotic tolerance during airway infection

L. A. Meirelles; E. Vayena; A. Debache; E. Schmidt; T. Rossy et al. 

Nature microbiology. 2024. Vol. 9, num. 12, p. 3284 – 3303. DOI : 10.1038/s41564-024-01842-3.

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RIP1 inhibition protects retinal ganglion cells in glaucoma models of ocular injury

B. k. Kim; T. Goncharov; S. A. Archaimbault; F. Roudnicky; J. D. Webster et al. 

CELL DEATH AND DIFFERENTIATION. 2024. DOI : 10.1038/s41418-024-01390-7.

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Generative machine learning produces kinetic models that accurately characterize intracellular metabolic states

S. Choudhury; B. Narayanan; M. Moret; V. Hatzimanikatis; L. Miskovic 

Nature Catalysis. 2024. Vol. 7, num. 10, p. 1086 – 1098. DOI : 10.1038/s41929-024-01220-6.

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Impact of phylogeny on the inference of functional sectors from protein sequence data

N. Dietler; A. Abbara; S. Choudhury; A. F. Bitbol 

PLoS computational biology. 2024. Vol. 20, num. 9. DOI : 10.1371/journal.pcbi.1012091.

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Recent Conference Papers, Poster and Talks

SYSTEMS BIOLOGY APPROACHES ALLOW INVESTIGATING THE SIGNALING AND METABOLIC REPROGRAMMING OF T CELLS

M. Masid; V. Hatzimanikatis; G. Coukos 

2023. Asian Transplantation Week (ATW)/ Annual congress of the Korean-Society-for-Transplantation (KST), Seoul, SOUTH KOREA, NOV 17-19, 2022. p. A20 – A20.

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A NON-CD25-BINDING IL-2 VARIANT FOR THE EXPANSION OR ENGINEERING OF T CELLS THAT CONFER SUPERIOR TUMOR CONTROL

Y. O. Miranda; M. Masid; C. J. Luna; G. M. Montalvo Bereau; T. Muller et al. 

2023. Asian Transplantation Week (ATW)/ Annual congress of the Korean-Society-for-Transplantation (KST), Seoul, SOUTH KOREA, NOV 17-19, 2022. p. A21 – A22.

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Machine Learning for Uncertainty Reduction in Biochemical Kinetic Models

L. Miskovic; J. Beal; M. Moret; V. Hatzimanikatis 

5th Conference on Constraint-Based Reconstruction and Analysis, Seattle, USA, October 14-16, 2018.

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