Publications

Our latest publications

Practical outcomes from CASP16 for users in need of biomolecular structure prediction

L. A. Abriata; M. Dal Peraro 

2025

Analysis of Integrator-Differentiator Transimpedance Amplifiers: Speed and Gain Tradeoff Introduced by Parasitic Capacitances

M. Saberi; C. Cao; M. D. Peraro; A. Schmid 

IEEE Transactions on Instrumentation and Measurement. 2025. DOI : 10.1109/tim.2025.3573761.

The HP1 box of KAP1 organizes HP1α for silencing of endogenous retroviral elements in embryonic stem cells

N. Gaurav; R. O’Hara; U. Hyder; W. Qin; C. Her et al. 

Nature Communications. 2025. Vol. 16, num. 1. DOI : 10.1038/s41467-025-60279-2.

The Need to Implement Fair Principles in Biomolecular Simulations

R. E. Amaro; J. Aqvist; I. Bahar; F. Battistini; A. Bellaiche et al. 

NATURE METHODS. 2025. Vol. 22, num. 4, p. 641 – 645. DOI : 10.1038/s41592-025-02635-0.

MolecularWebXR: Multiuser discussions in chemistry and biology through immersive and inclusive augmented and virtual reality

F. J. CortĂ©s RodrĂ­guez; G. Frattini; S. Phloi-Montri; F. T. Pinto Meireles; D. A. Terrien et al. 

Journal of molecular graphics & modelling. 2025. Vol. 135. DOI : 10.1016/j.jmgm.2024.108932.

Aerolysin Nanopore Structures Revealed at High Resolution in a Lipid Environment

J. S. Anton; I. Iacovache; J. F. Bada Juarez; L. A. Abriata; L. W. Perrin et al. 

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY. 2025. Vol. 147, num. 6. DOI : 10.1021/jacs.4c14288.

ACAD10 and ACAD11 enable mammalian 4-hydroxy acid lipid catabolism

E. H. Rashan; A. K. Bartlett; D. B. Khana; J. Zhang; R. Jain et al. 

Nature Structural & Molecular Biology. 2025. DOI : 10.1038/s41594-025-01596-4.

Uses of aerolysin nanopores

C. Cao; M. Dal Peraro; H. Lashuel 

WO2025003492.

2025.

Virus adaptation to heparan sulfate comes with capsid stability tradeoff

H. K. Tee; S. Crouzet; A. Muliyil; G. Mathez; V. Cagno et al. 

eLife. 2024. Vol. 13. DOI : 10.7554/eLife.98441.

OXA ÎČ-lactamases from Acinetobacter spp. are membrane bound and secreted into outer membrane vesicles

L. Capodimonte; F. T. P. Meireles; G. Bahr; R. A. Bonomo; M. Dal Peraro et al. 

MBIO. 2024. DOI : 10.1128/mbio.03343-24.

G–PLIP: Knowledge graph neural network for structure-free protein–ligand bioactivity prediction

S. J. Crouzet; A. M. Lieberherr; K. Atz; T. Nilsson; L. Sach-Peltason et al. 

Computational and Structural Biotechnology Journal. 2024. Vol. 23, p. 2872 – 2882. DOI : 10.1016/j.csbj.2024.06.029.

Exploring ion and analyte transport in beta-barrel forming biological nanopores

S. F. Mayer / M. Dal Peraro; A. Radenovic (Dir.)  

Lausanne, EPFL, 2024. 

Missense variants in CMS22 patients reveal that PREPL has both enzymatic and nonenzymatic functions

Y. Monnens; A. Theodoropoulou; K. Rosier; K. Bhalla; A. Mahy et al. 

JCI Insight. 2024. Vol. 9, num. 17. DOI : 10.1172/jci.insight.179276.

A look beyond the QR code of SNARE proteins

D. Yadav; A. Hacisuleyman; M. Dergai; D. Khalifeh; L. A. Abriata et al. 

Protein science : a publication of the Protein Society. 2024. Vol. 33, num. 9. DOI : 10.1002/pro.5158.

Differential Effects of Post-translational Modifications on the Membrane Interaction of Huntingtin Protein

Z. Zhang; C. Gehin; L. A. Abriata; M. Dal Peraro; H. Lashuel 

Acs Chemical Neuroscience. 2024. DOI : 10.1021/acschemneuro.4c00091.