Publications

Our latest publications

MolecularWebXR: Multiuser discussions in chemistry and biology through immersive and inclusive augmented and virtual reality

F. J. CortĂ©s RodrĂ­guez; G. Frattini; S. Phloi-Montri; F. T. Pinto Meireles; D. A. Terrien et al. 

Journal of molecular graphics & modelling. 2025. Vol. 135. DOI : 10.1016/j.jmgm.2024.108932.

Aerolysin Nanopore Structures Revealed at High Resolution in a Lipid Environment

J. S. Anton; I. Iacovache; J. F. Bada Juarez; L. A. Abriata; L. W. Perrin et al. 

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY. 2025. Vol. 147, num. 6. DOI : 10.1021/jacs.4c14288.

Uses of aerolysin nanopores

C. Cao; M. Dal Peraro; H. Lashuel 

WO2025003492.

2025.

Virus adaptation to heparan sulfate comes with capsid stability tradeoff

H. K. Tee; S. Crouzet; A. Muliyil; G. Mathez; V. Cagno et al. 

eLife. 2024. Vol. 13. DOI : 10.7554/eLife.98441.

OXA ÎČ-lactamases from Acinetobacter spp. are membrane bound and secreted into outer membrane vesicles

L. Capodimonte; F. T. P. Meireles; G. Bahr; R. A. Bonomo; M. Dal Peraro et al. 

MBIO. 2024. DOI : 10.1128/mbio.03343-24.

G–PLIP: Knowledge graph neural network for structure-free protein–ligand bioactivity prediction

S. J. Crouzet; A. M. Lieberherr; K. Atz; T. Nilsson; L. Sach-Peltason et al. 

Computational and Structural Biotechnology Journal. 2024. Vol. 23, p. 2872 – 2882. DOI : 10.1016/j.csbj.2024.06.029.

Exploring ion and analyte transport in beta-barrel forming biological nanopores

S. F. Mayer / M. Dal Peraro; A. Radenovic (Dir.)  

Lausanne, EPFL, 2024. 

Missense variants in CMS22 patients reveal that PREPL has both enzymatic and nonenzymatic functions

Y. Monnens; A. Theodoropoulou; K. Rosier; K. Bhalla; A. Mahy et al. 

JCI Insight. 2024. Vol. 9, num. 17. DOI : 10.1172/jci.insight.179276.

A look beyond the QR code of SNARE proteins

D. Yadav; A. Hacisuleyman; M. Dergai; D. Khalifeh; L. A. Abriata et al. 

Protein science : a publication of the Protein Society. 2024. Vol. 33, num. 9. DOI : 10.1002/pro.5158.

Differential Effects of Post-translational Modifications on the Membrane Interaction of Huntingtin Protein

Z. Zhang; C. Gehin; L. A. Abriata; M. Dal Peraro; H. Lashuel 

Acs Chemical Neuroscience. 2024. DOI : 10.1021/acschemneuro.4c00091.

PeSTo-Carbs: Geometric Deep Learning for Prediction of Protein-Carbohydrate Binding Interfaces

P. Bibekar; L. F. Krapp; M. Dal Peraro 

Journal of Chemical Theory and Computation. 2024. Vol. 20, num. 8, p. 2985 – 2991. DOI : 10.1021/acs.jctc.3c01145.

A humoral stress response protects Drosophila tissues from antimicrobial peptides

S. Rommelaere; A. Carboni; J. F. Bada Juarez; J-P. Boquete; L. A. Abriata et al. 

Current Biology. 2024. Vol. 34, num. 7, p. 1426 – 1437.e6. DOI : 10.1016/j.cub.2024.02.049.

Dissecting the membrane association mechanism of aerolysin pore at femtomolar concentrations using water as a probe

T. Roesel; C. Cao; J. F. Bada Juarez; M. Dal Peraro; S. Roke 

2024.

Label-Efficient Deep Learning Methods for Event Detection, Object Segmentation and Cell Tracking in Biological Microscopy Images

B. Gallusser / M. Dal Peraro; M. Weigert (Dir.)  

Lausanne, EPFL, 2024. 

Mutant aerolysin and uses thereof

C. Cao; M. Dal Peraro 

EP4362028.

2024.