Data and Software

targettrack – Deep learning pipeline for segmenting and tracking moving and deforming brains

Download the Python-based app:

Reference: Park et al., biorxiv (2022)


YeaZ – A convolutional neural network for segmenting yeast cell images

YeaZ (pronounced: y-easy) is a system for efficiently and accurately segmenting microscopy images of yeast cells.

Download the Python-based app and neural network weights:

Download standalone apps (outdated neural network parameters):

Download the training sets:

Try it out without installation:

Reference: Dietler et al., Nature Communications (2020)

Send us your yeast images to include in the training set!