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2022

Structural and molecular determinants for the interaction of ExbB from Serratia marcescens and HasB, a TonB paralog

V. Biou; R. J. D. Adaixo; M. Chami; P-D. Coureux; B. Laurent et al. 

Communications Biology. 2022-04-13. Vol. 5, num. 355. DOI : 10.1038/s42003-022-03306-y.

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Cryo-EM structures of a LptDE transporter in complex with Pro-macrobodies offer insight into lipopolysaccharide translocation

M. Botte; D. Ni; S. Schenck; I. Zimmermann; M. Chami et al. 

Nature Communications. 2022-04-05. Vol. 13, num. 1826. DOI : 10.1038/s41467-022-29459-2.

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Trans‐seeding of Alzheimer‐related tau protein by a yeast prion

M. Flach; C. Leu; A. Martinisi; Z. Skachokova; S. Frank et al. 

Alzheimer’s & Dementia. 2022-02-09.  p. 1-12. DOI : 10.1002/alz.12581.

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2.4-angstrom structure of the double-ring Gemmatimonas phototrophica photosystem

P. Qian; A. T. Gardiner; I. Simova; K. Naydenova; T. Croll et al. 

Science Advances. 2022-02-01. Vol. 8, num. 7, p. eabk3139. DOI : 10.1126/sciadv.abk3139.

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Cryo-EM structure of native human thyroglobulin

R. Adaixo; E. M. Steiner; R. D. Righetto; A. Schmidt; H. Stahlberg et al. 

Nature Communications. 2022-01-10. Vol. 13, num. 61. DOI : 10.1038/s41467-021-27693-8.

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2021

FTLD-TDP assemblies seed neoaggregates with subtype-specific features via a prion-like cascade

P. De Rossi; A. J. Lewis; J. Furrer; L. De Vos; T. Demeter et al. 

Embo Reports. 2021-11-22.  p. e53877. DOI : 10.15252/embr.202153877.

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Structural strains of misfolded tau protein define different diseases

H. Stahlberg; R. Riek 

Nature. 2021-09-29. Vol. 598, num. 7880, p. 264-265. DOI : 10.1038/d41586-021-02611-6.

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Nanomechanical bio-sensing for fast and reliable detection of viability and susceptibility of microorganisms

L. Venturelli; Z. R. Harrold; A. E. Murray; M. I. Villalba; E. M. Lundin et al. 

Sensors and Actuators B: Chemical. 2021-08-27. Vol. 348, p. 130650. DOI : 10.1016/j.snb.2021.130650.

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Nanomotion Spectroscopy as a New Approach to Characterize Bacterial Virulence

M. Villalba; L. Venturelli; R. Willaert; M. E. Vela; O. Yantorno et al. 

Microorganisms. 2021-08-01. Vol. 9, num. 8, p. 1545. DOI : 10.3390/microorganisms9081545.

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Structures of ABCG2 under turnover conditions reveal a key step in the drug transport mechanism

Q. Yu; D. Ni; J. Kowal; I. Manolaridis; S. M. Jackson et al. 

Nature Communications. 2021-07-19. Vol. 12, num. 1, p. 4376. DOI : 10.1038/s41467-021-24651-2.

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Identification of a Dps contamination in Mitomycin-C–induced expression of Colicin Ia

J. Pipercevic; R. P. Jakob; R. D. Righetto; K. N. Goldie; H. Stahlberg et al. 

Biochimica et Biophysica Acta (BBA) – Biomembranes. 2021-07-16. Vol. 1863, num. 7, p. 183607. DOI : 10.1016/j.bbamem.2021.183607.

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Structural basis of the activation of the CC chemokine receptor 5 by a chemokine agonist

P. Isaikina; C-J. Tsai; N. Dietz; F. Pamula; A. Grahl et al. 

Science Advances. 2021-06-01. Vol. 7, num. 25, p. eabg8685. DOI : 10.1126/sciadv.abg8685.

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Structural basis of drug recognition by the multidrug transporter ABCG2

J. Kowal; D. Ni; S. M. Jackson; I. Manolaridis; H. Stahlberg et al. 

Journal of Molecular Biology. 2021-05-13. Vol. 433, num. 13, p. 166980. DOI : 10.1101/2021.02.18.431786.

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Functional and structural characterization of Serratia marcescens ExbB: determinants of the interaction with HasB/TonB

V. Biou; R. J. Diogo Adaixo; M. Chami; P-D. Coureux; B. Laurent et al. 

bioRxiv. 2021-05-06. Vol. 2021.04.21.440815. DOI : 10.1101/2021.04.21.440815.

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Nano-Motion Analysis for Rapid and Label Free Assessing of Cancer Cell Sensitivity to Chemotherapeutics

P. Stupar; A. Podolski-Renic; M. I. Villalba; M. Dragoj; S. Jovanovic Stojanov et al. 

Medicina-Lithuania. 2021-05-01. Vol. 57, num. 5, p. 446. DOI : 10.3390/medicina57050446.

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Insight into Lipopolysaccharide Translocation by Cryo-EM structures of a LptDE Transporter in Complex with Pro-Macrobodies

M. Botte; D. Ni; S. Schenck; I. Zimmermann; M. Chami et al. 

bioRxiv. 2021-03-23. Vol. 2021.03.23.436624. DOI : 10.1101/2021.03.23.436624.

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Nanophotonic structures with optical surface modes for tunable spin current generation

P. Shilina; D. O. Ignatyeva; P. O. Kapralov; S. K. Sekatskii; M. Nur-E-Alam et al. 

Nanoscale. 2021-03-21. Vol. 13, num. 11, p. 5791-5799. DOI : 10.1039/d0nr08692d.

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Sensing of Surface and Bulk Refractive Index Using Magnetophotonic Crystal with Hybrid Magneto-Optical Response

D. Ignatyeva; P. Kapralov; P. Golovko; P. Shilina; A. Khramova et al. 

Sensors. 2021-03-11. Vol. 21, num. 6, p. 1984. DOI : 10.3390/s21061984.

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Nanomotion Detection-Based Rapid Antibiotic Susceptibility Testing

S. Kasas; A. Malovichko; M. I. Villalba; M. E. Vela; O. Yantorno et al. 

Antibiotics. 2021-03-10. Vol. 10, num. 3, p. 287. DOI : 10.3390/antibiotics10030287.

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Coordination-Driven Monolayer-to-Bilayer Transition in Two-Dimensional Metal–Organic Networks

M. Moradi; N. L. Lengweiler; C. E. Housecroft; L. G. Tulli; H. Stahlberg et al. 

The Journal of Physical Chemistry B. 2021-03-03. Vol. 125, num. 16, p. 4204-4211. DOI : 10.1021/acs.jpcb.1c01058.

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Ultrasensitive Optical Label-Free Biosensing and Fluorescent Measurements using UV Surface Plasmons in Gold Nanolayers Launched with the Support of a Specially Designed Photonic Crystal

K. Prusakov; D. Basmanov; D. Klinov; S. K. Sekatskii 

2021-02-12.  p. 364A-364A.

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Environmental Control of Amyloid Polymorphism by Modulation of Hydrodynamic Stress

J. Zhou; L. Venturelli; L. Keiser; S. K. Sekatskii; F. Gallaire et al. 

Acs Nano. 2021-01-26. Vol. 15, num. 1, p. 944-953. DOI : 10.1021/acsnano.0c07570.

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Single Particle Analysis for High-Resolution 2D Electron Crystallography

R. Righetto; H. Stahlberg 

Methods in Molecular Biology. 2021-01-25. Vol. 2215, p. 267-284. DOI : 10.1007/978-1-0716-0966-8_12.

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2020

Alterations in Sub-Axonal Architecture Between Normal Aging and Parkinson’s Diseased Human Brains Using Label-Free Cryogenic X-ray Nanotomography

H. T. Tran; E. H. R. Tsai; A. J. Lewis; T. Moors; J. G. J. M. Bol et al. 

Frontiers in Neuroscience. 2020-11-25. Vol. 14, p. 570019. DOI : 10.3389/fnins.2020.570019.

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High-resolution cryo-EM structure of urease from the pathogen Yersinia enterocolitica

R. D. Righetto; L. Anton; R. Adaixo; R. P. Jakob; J. Zivanov et al. 

Nature Communications. 2020-11-01. Vol. 11, num. 1, p. 5101. DOI : 10.1038/s41467-020-18870-2.

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Structural investigation of ACE2 dependent disassembly of the trimeric SARS-CoV-2 Spike glycoprotein

D. Ni; K. Lau; F. Lehmann; A. Fränkl; D. Hacker et al. 

bioRxiv. 2020-10-12.  p. 2020.10.12.336016. DOI : 10.1101/2020.10.12.336016.

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Architecture of the centriole cartwheel‐containing region revealed by cryo‐electron tomography

N. Klena; M. Le Guennec; A. Tassin; H. van den Hoek; P. S. Erdmann et al. 

The EMBO Journal. 2020-09-22. Vol. 39, num. 22, p. 1-17, e106246. DOI : 10.15252/embj.2020106246.

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Single particle cryo‐EM of the complex between interphotoreceptor retinoid‐binding protein and a monoclonal antibody

A. E. Sears; S. Albiez; S. Gulati; B. Wang; P. Kiser et al. 

The FASEB Journal. 2020-09-21. Vol. 34, num. 10, p. 13918-13934. DOI : 10.1096/fj.202000796RR.

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Structural basis of Focal Adhesion Kinase activation on lipid membranes

I. Acebrón; R. D. Righetto; C. Schoenherr; S. Buhr; P. Redondo et al. 

The EMBO Journal. 2020-08-01. Vol. e104743, p. 1-21, e104743. DOI : 10.15252/embj.2020104743.

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Protease-activation using anti-idiotypic masks enables tumor specificity of a folate receptor 1-T cell bispecific antibody

M. Geiger; K-G. Stubenrauch; J. Sam; W. F. Richter; G. Jordan et al. 

Nature Communications. 2020-06-24. Vol. 11, num. 1, p. 3169. DOI : 10.1038/s41467-020-16838-w.

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The Contorsbody, an antibody format for agonism: design, structure, and function

G. J. Georges; S. Dengl; A. Bujotzek; F. Hesse; J. A. Fischer et al. 

Computational and Structural Biotechnology Journal. 2020-05-14. Vol. 18, p. 1210-1220. DOI : 10.1016/j.csbj.2020.05.007.

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Cryo-EM, X-ray diffraction, and atomistic simulations reveal determinants for the formation of a supramolecular myelin-like proteolipid lattice

S. Ruskamo; O. C. Krokengen; J. Kowal; T. Nieminen; M. Lehtimaki et al. 

Journal of Biological Chemistry. 2020-04-07.  p. jbc.RA120.013087. DOI : 10.1074/jbc.RA120.013087.

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New insights on the structure of alpha-synuclein fibrils using cryo-electron microscopy

R. Guerrero-Ferreira; L. Kovacik; D. Ni; H. Stahlberg 

Current Opinion in Neurobiology. 2020-04-01. Vol. 61, p. 89-95. DOI : 10.1016/j.conb.2020.01.014.

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Grayscale e-beam lithography: Effects of a delayed development for well-controlled 3D patterning

T. Mortelmans; D. Kazazis; V. A. Guzenko; C. Padeste; T. Braun et al. 

Microelectronic Engineering. 2020-03-15. Vol. 225, p. 111272. DOI : 10.1016/j.mee.2020.111272.

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A helical inner scaffold provides a structural basis for centriole cohesion

M. Le Guennec; N. Klena; D. Gambarotto; M. H. Laporte; A-M. Tassin et al. 

Science Advances. 2020-02-14. Vol. 6, num. 7, p. eaaz4137. DOI : 10.1126/sciadv.aaz4137.

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2019

Two new polymorphic structures of human full-length alpha-synuclein fibrils solved by cryo-electron microscopy

R. Guerrero-Ferreira; N. M. Taylor; A-A. Arteni; P. Kumari; D. Mona et al. 

eLife. 2019-12-09. Vol. 8, p. e48907. DOI : 10.7554/eLife.48907.

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Imaging of post-mortem human brain tissue using electron and X-ray microscopy

A. J. Lewis; C. Genoud; M. Pont; W. D. J. van de Berg; S. Frank et al. 

Current Opinion in Structural Biology. 2019-10-01. Vol. 58, p. 138-148. DOI : 10.1016/j.sbi.2019.06.003.

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DuoMab: a novel CrossMab-based IgG-derived antibody format for enhanced antibody-dependent cell-mediated cytotoxicity

C. Sustmann; S. Dickopf; J. T. Regula; H. Kettenberger; M. Molhoj et al. 

mAbs. 2019-09-17. Vol. 11, num. 8, p. 1402-1414. DOI : 10.1080/19420862.2019.1661736.

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Diverse roles of TssA-like proteins in the assembly of bacterial type VI secretion systems

J. P. Schneider; S. Nazarov; R. Adaixo; M. Liuzzo; P. D. Ringel et al. 

Embo Journal. 2019-08-12.  p. e100825. DOI : 10.15252/embj.2018100825.

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Differential Visual Proteomics: Enabling the Proteome-Wide Comparison of Protein Structures of Single-Cells

A. Syntychaki; L. Rima; C. Schmidli; T. Stohler; A. Bieri et al. 

Journal of Proteome Research. 2019-07-29. Vol. 18, num. 9, p. 3521-3531. DOI : 10.1021/acs.jproteome.9b00447.

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Microfluidic protein isolation and sample preparation for high-resolution cryo-EM

C. Schmidli; S. Albiez; L. Rima; R. Righetto; I. Mohammed et al. 

Proceedings of the National Academy of Sciences. 2019-07-10. Vol. 116, num. 30, p. 15007-15012. DOI : 10.1073/pnas.1907214116.

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Cryo-EM structure of the rhodopsin-G alpha i-beta gamma complex reveals binding of the rhodopsin C-terminal tail to the g beta subunit

C-J. Tsai; J. Marino; R. Adaixo; F. Pamulal; J. Muehle et al. 

eLife. 2019-06-28. Vol. 8, p. e46041. DOI : 10.7554/eLife.46041.

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Lewy pathology in Parkinson’s disease consists of crowded organelles and lipid membranes

S. H. Shahmoradian; A. J. Lewis; C. Genoud; J. Hench; T. E. Moors et al. 

Nature Neuroscience. 2019-06-24. Vol. 22, num. 7, p. 1099-1109. DOI : 10.1038/s41593-019-0423-2.

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Tumor-targeted 4-1BB agonists for combination with T cell bispecific antibodies as off-the-shelf therapy

C. Claus; C. Ferrara; W. Xu; J. Sam; S. Lang et al. 

Science Translational Medicine. 2019-06-12. Vol. 11, num. 496, p. eaav5989. DOI : 10.1126/scitranslmed.aav5989.

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Cryo-EM structures of the pore-forming A subunit from the Yersinia entomophaga ABC toxin

S. J. Piper; L. Brillault; R. Rothnagel; T. I. Croll; J. K. Box et al. 

Nature Communications. 2019-04-26. Vol. 10, num. 1, p. 1952. DOI : 10.1038/s41467-019-09890-8.

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Retrieving high-resolution information from disordered 2D crystals by single-particle cryo-EM

R. D. Righetto; N. Biyani; J. Kowal; M. Chami; H. Stahlberg 

Nature Communications. 2019-04-12. Vol. 10, num. 1, p. 1722. DOI : 10.1038/s41467-019-09661-5.

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Supramolecular architectures of molecularly thin yet robust free-standing layers

M. Moradi; N. L. Opara; L. G. Tulli; C. Waeckerlin; S. J. Dalgarno et al. 

Science Advances. 2019-02-01. Vol. 5, num. 2, p. eaav4489. DOI : 10.1126/sciadv.aav4489.

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Cryo-EM structure of phosphodiesterase 6 reveals insights into the allosteric regulation of type I phosphodiesterases

S. Gulati; K. Palczewski; A. Engel; H. Stahlberg; L. Kovacik 

Science Advances. 2019-02-01. Vol. 5, num. 2, p. eaav4322. DOI : 10.1126/sciadv.aav4322.

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Molecular structure and function of myelin protein P0 in membrane stacking

A. Raasakka; S. Ruskamo; J. Kowal; H. Han; A. Baumann et al. 

Scientific Reports. 2019-01-24. Vol. 9, num. 1, p. 642. DOI : 10.1038/s41598-018-37009-4.

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TDP-43 extracted from frontotemporal lobar degeneration subject brains displays distinct aggregate assemblies and neurotoxic effects reflecting disease progression rates

F. Laferriere; Z. Maniecka; M. Perez-Berlanga; M. Hruska-Plochan; L. Gilhespy et al. 

Nature Neuroscience. 2019. Vol. 22, num. 1, p. 65-77. DOI : 10.1038/s41593-018-0294-y.

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2018

Cerebral Corpora amylacea are dense membranous labyrinths containing structurally preserved cell organelles

P. P. Navarro; C. Genoud; D. Castano-Diez; A. Graff-Meyer; A. J. Lewis et al. 

Scientific Reports. 2018-12-01. Vol. 8, num. 1, p. 18046. DOI : 10.1038/s41598-018-36223-4.

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Self-Assembly of a Designed Nucleoprotein Architecture through Multimodal Interactions

R. H. Subramanian; S. J. Smith; R. G. Alberstein; J. B. Bailey; L. Zhang et al. 

ACS Central Science. 2018-11-15. Vol. 4, num. 11, p. 1578-1586. DOI : 10.1021/acscentsci.8b00745.

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Cryo-EM structures of a human ABCG2 mutant trapped in ATP-bound and substrate-bound states

I. Manolaridis; S. M. Jackson; N. M. I. Taylor; J. Kowal; H. Stahlberg et al. 

Nature. 2018-11-07. Vol. 563, num. 7731, p. 426-430. DOI : 10.1038/s41586-018-0680-3.

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Inner-membrane GspF of the bacterial type II secretion system is a dimeric adaptor mediating pseudopilus biogenesis

W. Van Putte; T. De Vos; W. Van Den Broeck; H. Stahlberg; M. Kudryashev et al. 

bioRxiv. 2018-10-05.  p. 435982. DOI : 10.1101/435982.

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An iris diaphragm mechanism to gate a cyclic nucleotide-gated ion channel

A. Marchesi; X. Gao; R. Adaixo; J. Rheinberger; H. Stahlberg et al. 

Nature Communications. 2018-09-28. Vol. 9, num. 1, p. 3978. DOI : 10.1038/s41467-018-06414-8.

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Structure of a PSI-LHCI-cyt b(6)f supercomplex in Chlamydomonas reinhardtii promoting cyclic electron flow under anaerobic conditions

J. Steinbeck; I. L. Ross; R. Rothnagel; P. Gaebelein; S. Schulze et al. 

Proceedings of the National Academy of Sciences. 2018-09-25. Vol. 115, num. 41, p. 10517-10522. DOI : 10.1073/pnas.1809973115.

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Protocols for Subtomogram Averaging of Membrane Proteins in the Dynamo Software Package

P. P. Navarro; H. Stahlberg; D. Castano-Diez 

Frontiers in Molecular Biosciences. 2018-09-04. Vol. 5, p. 82. DOI : 10.3389/fmolb.2018.00082.

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Demonstration of femtosecond X-ray pump X-ray probe diffraction on protein crystals

N. L. Opara; I. Mohacsi; M. Makita; D. Castano-Diez; A. Diaz et al. 

Structural Dynamics. 2018-09-01. Vol. 5, num. 5, p. 54303. DOI : 10.1063/1.5050618.

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Miniaturized Sample Preparation for Transmission Electron Microscopy

C. Schmidli; L. Rima; S. A. Arnold; T. Stohler; A. Syntychaki et al. 

Journal of Visualized Experiments. 2018-07-27. num. 137, p. e57310. DOI : 10.3791/57310.

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Cryo-EM structure of alpha-synuclein fibrils

R. Guerrero-Ferreira; N. M. I. Taylor; D. Mona; P. Ringler; M. E. Lauer et al. 

eLife. 2018-07-03. Vol. 7, p. e36402. DOI : 10.7554/eLife.36402.

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Structural basis for regulation of human acetyl-CoA carboxylase

M. Hunkeler; A. Hagmann; E. Stuttfeld; M. Chami; Y. Guri et al. 

Nature. 2018-06-13. Vol. 558, num. 7710, p. 470-474. DOI : 10.1038/s41586-018-0201-4.

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Femtosecond X-ray coherent diffraction of aligned amyloid fibrils on low background graphene

C. Seuring; K. Ayyer; E. Filippaki; M. Barthelmess; J-N. Longchamp et al. 

Nature Communications. 2018-05-09. Vol. 9, num. 1, p. 1836. DOI : 10.1038/s41467-018-04116-9.

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Structural basis of small-molecule inhibition of human multidrug transporter ABCG2

S. M. Jackson; I. Manolaridis; J. Kowal; M. Zechner; N. M. I. Taylor et al. 

Nature Structural & Molecular Biology. 2018-04-01. Vol. 25, num. 4, p. 333-340. DOI : 10.1038/s41594-018-0049-1.

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Image processing techniques for high-resolution structure determination from badly ordered 2D crystals

N. Biyani; S. Scherer; R. D. Righetto; J. Kowal; M. Chami et al. 

Journal of Structural Biology. 2018-04-01. Vol. 203, num. 2, p. 120-134. DOI : 10.1016/j.jsb.2018.03.013.

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Miniaturizing EM Sample Preparation: Opportunities, Challenges, and “Visual Proteomics”

S. A. Arnold; S. A. Muller; C. Schmidli; A. Syntychaki; L. Rima et al. 

Proteomics. 2018-02-14. Vol. 18, num. 5-6, p. 1700176. DOI : 10.1002/pmic.201700176.

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Structure of a zosuquidar and UIC2-bound human-mouse chimeric ABCB1

A. Alam; R. Kung; J. Kowal; R. A. McLeod; N. Tremp et al. 

Proceedings of the National Academy of Sciences. 2018-02-13. Vol. 115, num. 9, p. E1973-E1982. DOI : 10.1073/pnas.1717044115.

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3D correlative electron microscopy reveals continuity of Brucella-containing vacuoles with the endoplasmic reticulum

J. Sedzicki; T. Tschon; S. H. Low; K. Willemart; K. N. Goldie et al. 

Journal of Cell Science. 2018-01-12. Vol. 131, num. 4, p. jcs210799. DOI : 10.1242/jcs.210799.

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2017

Cryo-EM reconstruction of Type VI secretion system baseplate and sheath distal end

S. Nazarov; J. P. Schneider; M. Brackmann; K. N. Goldie; H. Stahlberg et al. 

The EMBO Journal. 2017-12-18. Vol. 37, num. 4, p. e97103. DOI : 10.15252/embj.201797103.

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High-Resolution Cryoelectron Microscopy Structure of the Cyclic Nucleotide-Modulated Potassium Channel MloK1 in a Lipid Bilayer

J. Kowal; N. Biyani; M. Chami; S. Scherer; A. J. Rzepiela et al. 

Structure. 2017-12-01. Vol. 26, num. 1, p. 20. DOI : 10.1016/j.str.2017.11.012.

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MRCZ – A file format for cryo-TEM data with fast compression

R. A. McLeod; R. D. Righetto; A. Stewart; H. Stahlberg 

Journal of Structural Biology. 2017-11-01. Vol. 201, num. 3, p. 252-257. DOI : 10.1016/j.jsb.2017.11.012.

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Cryo-EM structure of the extended type VI secretion system sheath-tube complex

J. Wang; M. Brackmann; D. Castano-Diez; M. Kudryashev; K. N. Goldie et al. 

Nature Microbiology. 2017-09-25. Vol. 2, num. 11, p. 1507-1512. DOI : 10.1038/s41564-017-0020-7.

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Cryo-EM analysis of homodimeric full-length LRRK2 and LRRK1 protein complexes

K. Sejwal; M. Chami; H. Remigy; R. Vancraenenbroeck; W. Sibran et al. 

Scientific Reports. 2017-08-17. Vol. 7, num. 1, p. 8667. DOI : 10.1038/s41598-017-09126-z.

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Three-Dimensional Imaging of Biological Tissue by Cryo X-Ray Ptychography

S. H. Shahmoradian; E. H. R. Tsai; A. Diaz; M. Guizar-Sicairos; J. Raabe et al. 

Scientific Reports. 2017-07-24. Vol. 7, num. 1, p. 6291. DOI : 10.1038/s41598-017-05587-4.

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Membrane Association Landscape of Myelin Basic Protein Portrays Formation of the Myelin Major Dense Line

A. Raasakka; S. Ruskamo; J. Kowal; R. Barker; A. Baumann et al. 

Scientific Reports. 2017-07-10. Vol. 7, num. 1, p. 4974. DOI : 10.1038/s41598-017-05364-3.

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Lipid Internal Dynamics Probed in Nanodiscs

D. Martinez; M. Decossas; J. Kowal; L. Frey; H. Stahlberg et al. 

ChemPhysChem. 2017-06-30. Vol. 18, num. 19, p. 2651-2657. DOI : 10.1002/cphc.201700450.

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Membrane vesicle secretion and prophage induction in multidrug-resistant Stenotrophomonas maltophilia in response to ciprofloxacin stress

S. Devos; W. Van Putte; J. Vitse; G. Van Driessche; S. Stremersch et al. 

Environmental Microbiology. 2017-06-22. Vol. 19, num. 10, p. 3930-3937. DOI : 10.1111/1462-2920.13793.

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Direct protein crystallization on ultrathin membranes for diffraction measurements at X-ray free-electron lasers

N. Opara; I. Martiel; S. A. Arnold; T. Braun; H. Stahlberg et al. 

Journal of Applied Crystallography. 2017-06-01. Vol. 50, p. 909-918. DOI : 10.1107/S1600576717005799.

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Structure of the human multidrug transporter ABCG2

N. M. I. .. Taylor; I. Manolaridis; S. M. Jackson; J. Kowal; H. Stahlberg et al. 

Nature. 2017-05-29. Vol. 546, num. 7659, p. 504-509. DOI : 10.1038/nature22345.

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Focus: The interface between data collection and data processing in cryo-EM

N. Biyani; R. D. Righetto; R. McLeod; D. Caujolle-Bert; D. Castano-Diez et al. 

Journal of Structural Biology. 2017-05-01. Vol. 198, num. 2, p. 124-133. DOI : 10.1016/j.jsb.2017.03.007.

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Robust image alignment for cryogenic transmission electron microscopy

R. A. McLeod; J. Kowal; P. Ringler; H. Stahlberg 

Journal of Structural Biology. 2017-03-01. Vol. 197, num. 3, p. 279-293. DOI : 10.1016/j.jsb.2016.12.006.

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Blotting-free and lossless cryo-electron microscopy grid preparation from nanoliter-sized protein samples and single-cell extracts

S. A. Arnold; S. Albiez; A. Bieri; A. Syntychaki; R. Adaixo et al. 

Journal of Structural Biology. 2017-03-01. Vol. 197, num. 3, p. 220-226. DOI : 10.1016/j.jsb.2016.11.002.

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Amyloid Fibril Polymorphism: Almost Identical on the Atomic Level, Mesoscopically Very Different

C. Seuring; J. Verasdonck; P. Ringler; R. Cadalbert; H. Stahlberg et al. 

The Journal of Physical Chemistry B. 2017-02-20. Vol. 121, num. 8, p. 1783-1792. DOI : 10.1021/acs.jpcb.6b10624.

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Dynamo Catalogue: Geometrical tools and data management for particle picking in subtomogram averaging of cryo-electron tomograms

D. Castano-Diez; M. Kudryashev; H. Stahlberg 

Journal of Structural Biology. 2017-02-01. Vol. 197, num. 2, p. 135-144. DOI : 10.1016/j.jsb.2016.06.005.

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Monitoring the Conformational Changes of Individual Cyclic Nucleotide-Gated Ion Channels by High-Speed Atomic Force Microscopy

M. Rangl; A. Miyagi; J. Kowal; H. Stahlberg; C. M. Nimigean et al. 

Biophysical Journal. 2017-02-01. Vol. 112, num. 3, p. 422A-422A. DOI : 10.1016/j.bpj.2016.11.2257.

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Proteoliposomes – a system to study membrane proteins under buffer gradients by cryo-EM

K. Sejwal; M. Chami; P. Baumgartner; J. Kowal; S. A. Mueller et al. 

Nanotechnology Reviews. 2017-01-01. Vol. 6, num. 1, p. 57-74. DOI : 10.1515/ntrev-2016-0081.

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Expression, Biochemistry, and Stabilization with Camel Antibodies of Membrane Proteins: Case Study of the Mouse 5-HT3 Receptor

G. Hassaïne; C. Deluz; L. Grasso; R. Wyss; R. Hovius et al. 

Membrane Protein Structure and Function Characterization; New York, NY: Springer New York, 2017. p. 139-168.

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Cell-free reconstitution reveals centriole cartwheel assembly mechanisms

P. Guichard; V. Hamel; M. Le Guennec; N. Banterle; I. Iacovache et al. 

Nature Communications. 2017. Vol. 8, p. 14813. DOI : 10.1038/ncomms14813.

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Two-dimensional crystallization of the mouse serotonin 5-HT3A receptor

J. Rheinberger; G. Hassaine; M. Chami; H. Stahlberg; H. Vogel et al. 

Micron. 2017. Vol. 92, p. 19-24. DOI : 10.1016/j.micron.2016.10.004.

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2016

Solution structure of discoidal high-density lipoprotein particles with a shortened apolipoprotein A-I

S. Bibow; Y. Polyhach; C. Eichmann; C. N. Chi; J. Kowal et al. 

Nature Structural & Molecular Biology. 2016-12-26. Vol. 24, num. 2, p. 187-193. DOI : 10.1038/nsmb.3345.

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Real-time visualization of conformational changes within single MloK1 cyclic nucleotide-modulated channels

M. Rang; A. Miyagi; J. Kowal; H. Stahlberg; C. M. Nimigean et al. 

Nature Communications. 2016-09-20. Vol. 7, num. 1, p. 12789. DOI : 10.1038/ncomms12789.

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Biochemical and biophysical approaches to study the structure and function of the chloride channel (ClC) family of proteins

P. D. Abeyrathne; M. Chami; H. Stahlberg 

Biochimie. 2016-09-01. Vol. 128, p. 154-162. DOI : 10.1016/j.biochi.2016.08.008.

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Ultrathin membrane chips as X-ray transparent supports for serial crystallography

N. Opara; S. Arnold; T. Braun; H. Stahlberg; C. Padeste 

Acta Crystallographica Section A Foundations and Advances. 2016-08-28. Vol. 72, p. S184-S184. DOI : 10.1107/S2053273316097266.

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GSDMD membrane pore formation constitutes the mechanism of pyroptotic cell death

L. Sborgi; S. Ruhl; E. Mulvihill; J. Pipercevic; R. Heilig et al. 

The EMBO Journal. 2016-07-14. Vol. 35, num. 16, p. 1766-1778. DOI : 10.15252/embj.201694696.

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Total Sample Conditioning and Preparation of Nanoliter Volumes for Electron Microscopy

S. A. Arnold; S. Albiez; N. Opara; M. Chami; C. Schmidli et al. 

ACS Nano. 2016-05-24. Vol. 10, num. 5, p. 4981-4988. DOI : 10.1021/acsnano.6b01328.

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Cholesteryl ester transfer between lipoproteins does not require a ternary tunnel complex with CETP

M. E. Lauer; A. Graff-Meyer; A. C. Rufer; C. Maugeais; E. von der Mark et al. 

Journal of Structural Biology. 2016-05-01. Vol. 194, num. 2, p. 191-198. DOI : 10.1016/j.jsb.2016.02.016.

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Characterization of mAb dimers reveals predominant dimer forms common in therapeutic mAbs

F. Plath; P. Ringler; A. Graff-Meyer; H. Stahlberg; M. E. Lauer et al. 

mAbs. 2016-03-31. Vol. 8, num. 5, p. 928-940. DOI : 10.1080/19420862.2016.1168960.

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Cullin-RING ubiquitin E3 ligase regulation by the COP9 signalosome

S. Cavadini; E. S. Fischer; R. D. Bunker; A. Potenza; G. M. Lingaraju et al. 

Nature. 2016-03-30. Vol. 531, num. 7596, p. 598-603. DOI : 10.1038/nature17416.

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Preparation and Characterization of Stable -Synuclein Lipoprotein Particles

C. Eichmann; S. Campioni; J. Kowal; I. Maslennikov; J. Gerez et al. 

Journal of Biological Chemistry. 2016-02-04. Vol. 291, num. 16, p. 8516-8527. DOI : 10.1074/jbc.M115.707968.

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Direct Visualization of Glutamate Transporter Transport Cycle

Y. Ruan; A. Miyagi; X. Wang; M. Chami; H. Stahlberg et al. 

Biophysical Journal. 2016-02-01. Vol. 110, num. 3, p. 178A-179A. DOI : 10.1016/j.bpj.2015.11.996.

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The lipidome associated with the gamma-secretase complex is required for its integrity and activity

S. Ayciriex; H. Gerber; G. M. G. Osuna; M. Chami; H. Stahlberg et al. 

Biochemical Journal. 2016. Vol. 473, num. 3, p. 321-334. DOI : 10.1042/Bj20150448.

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Structure of the T4 baseplate and its function in triggering sheath contraction

N. M. I. Taylor; N. S. Prokhorov; R. C. Guerrero-Ferreira; M. M. Shneider; C. Browning et al. 

Nature. 2016. Vol. 533, num. 7603, p. 346-+. DOI : 10.1038/nature17971.

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The Structure of the Mouse Serotonin 5-HT3 Receptor in Lipid Vesicles

M. Kudryashev; D. Castaño-Díez; C. Deluz; G. Hassaine; L. Grasso et al. 

Structure. 2016. Vol. 24, num. 1, p. 165-170. DOI : 10.1016/j.str.2015.11.004.

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2015

Structure and assembly of the mouse ASC inflammasome by combined NMR spectroscopy and cryo-electron microscopy

L. Sborgi; F. Ravotti; V. P. Dandey; M. S. Dick; A. Mazur et al. 

Proceedings of the National Academy of Sciences. 2015-10-13. Vol. 112, num. 43, p. 13237-13242. DOI : 10.1073/pnas.1507579112.

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Translational arrest by a prokaryotic signal recognition particle is mediated by RNA interactions

B. Beckert; A. Kedrov; D. Sohmen; G. Kempf; K. Wild et al. 

Nature Structural & Molecular Biology. 2015-09-07. Vol. 22, num. 10, p. 767-773. DOI : 10.1038/nsmb.3086.

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3D reconstruction of two-dimensional crystals

H. Stahlberg; N. Biyani; A. Engel 

Archives of Biochemistry and Biophysics. 2015-09-01. Vol. 581, p. 68-77. DOI : 10.1016/j.abb.2015.06.006.

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CTF Challenge: Result summary

R. Marabini; B. Carragher; S. Chen; J. Chen; A. Cheng et al. 

Journal of Structural Biology. 2015-06-01. Vol. 190, num. 3, p. 348-359. DOI : 10.1016/j.jsb.2015.04.003.

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Structure of the Type VI Secretion System Contractile Sheath

M. Kudryashev; R. Y-R. Wang; M. Brackmann; S. Scherer; T. Maier et al. 

Cell. 2015-02-01. Vol. 160, num. 5, p. 952-962. DOI : 10.1016/j.cell.2015.01.037.

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Yersinia enterocolitica type III secretion injectisomes form regularly spaced clusters, which incorporate new machines upon activation

M. Kudryashev; A. Diepold; M. Amstutz; J. P. Armitage; H. Stahlberg et al. 

Molecular Microbiology. 2015-01-30. Vol. 95, num. 5, p. 875-884. DOI : 10.1111/mmi.12908.

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2014

Disease Modeling and Phenotypic Drug Screening for Diabetic Cardiomyopathy using Human Induced Pluripotent Stem Cells

F. M. Drawnel; S. Boccardo; M. Prummer; F. Delobel; A. Graff et al. 

Cell Reports. 2014-11-01. Vol. 9, num. 3, p. 810-820. DOI : 10.1016/j.celrep.2014.09.055.

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The ultrastructure of Chlorobaculum tepidum revealed by cryo-electron tomography

M. Kudryashev; A. Aktoudianaki; D. Dedoglou; H. Stahlberg; G. Tsiotis 

Biochimica et Biophysica Acta (BBA) – Bioenergetics. 2014-10-01. Vol. 1837, num. 10, p. 1635-1642. DOI : 10.1016/j.bbabio.2014.06.002.

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Functional surface engineering by nucleotide-modulated potassium channel insertion into polymer membranes attached to solid supports

J. L. Kowal; J. K. Kowal; D. Wu; H. Stahlberg; C. G. Palivan et al. 

Biomaterials. 2014-08-01. Vol. 35, num. 26, p. 7286-7294. DOI : 10.1016/j.biomaterials.2014.05.043.

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Structural and Mechanistic Paradigm of Leptin Receptor Activation Revealed by Complexes with Wild-Type and Antagonist Leptins

K. Moharana; L. Zabeau; F. Peelman; P. Ringler; H. Stahlberg et al. 

Structure. 2014-06-01. Vol. 22, num. 6, p. 866-877. DOI : 10.1016/j.str.2014.04.012.

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Exploring the Interactome: Microfluidic Isolation of Proteins and Interacting Partners for Quantitative Analysis by Electron Microscopy

D. Giss; S. Kemmerling; V. Dandey; H. Stahlberg; T. Braun 

Analytical Chemistry. 2014-05-20. Vol. 86, num. 10, p. 4680-4687. DOI : 10.1021/ac4027803.

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2dx_automator: Implementation of a semiautomatic high-throughput high-resolution cryo-electron crystallography pipeline

S. Scherer; J. Kowal; M. Chami; V. Dandey; M. Arheit et al. 

Journal of Structural Biology. 2014-05-01. Vol. 186, num. 2, p. 302-307. DOI : 10.1016/j.jsb.2014.03.016.

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Relative bioavailability of a new tamper resistant extended-release oxycodone/naloxone combination product

H. Stahlberg; M. Brett; S. Schwier; A. Philipp 

The Journal of Pain. 2014-04-01. Vol. 15, num. 4, p. S86-S86. DOI : 10.1016/j.jpain.2014.01.354.

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Rendering graphene supports hydrophilic with non-covalent aromatic functionalization for transmission electron microscopy

R. S. Pantelic; W. Fu; C. Schoenenberger; H. Stahlberg 

Applied Physics Letters. 2014-03-31. Vol. 104, num. 13, p. 134103. DOI : 10.1063/1.4870531.

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Single particle 3D reconstruction for 2D crystal images of membrane proteins

S. Scherer; M. Arheit; J. Kowal; X. Zeng; H. Stahlberg 

Journal of Structural Biology. 2014-03-01. Vol. 185, num. 3, p. 267-277. DOI : 10.1016/j.jsb.2013.12.011.

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A KcsA/MloK1 Chimeric Ion Channel Has Lipid-dependent Ligand-binding Energetics

J. G. McCoy; R. Rusinova; D. M. Kim; J. Kowal; S. Banerjee et al. 

Journal of Biological Chemistry. 2014-02-10. Vol. 289, num. 14, p. 9535-9546. DOI : 10.1074/jbc.M113.543389.

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Ligand-induced structural changes in the cyclic nucleotide-modulated potassium channel MloK1

J. Kowal; M. Chami; P. Baumgartner; M. Arheit; P-L. Chiu et al. 

Nature Communications. 2014-01-28. Vol. 5, num. 1, p. 3106. DOI : 10.1038/ncomms4106.

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Clostridium difficile toxin CDT hijacks microtubule organization and reroutes vesicle traffic to increase pathogen adherence

C. Schwan; A. S. Kruppke; T. Noelke; L. Schumacher; F. Koch-Nolte et al. 

Proceedings of the National Academy of Sciences. 2014-01-27. Vol. 111, num. 6, p. 2313-2318. DOI : 10.1073/pnas.1311589111.

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Expression, Purification and Stabilization of the Mouse 5HT3 Receptor

G. Hassaine; C. Deluz; A. Graff; C. Moreau; R. Wyss et al. 

Biophysical Journal. 2014-01-01. Vol. 106, num. 2, p. 338A-338A. DOI : 10.1016/j.bpj.2013.11.1934.

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X-ray structure of the mouse serotonin 5-HT3 receptor

G. Hassaine; C. Deluz; L. Grasso; R. Wyss; M. B. Tol et al. 

Nature. 2014. Vol. 512, p. 276-281. DOI : 10.1038/nature13552.

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openBEB: open biological experiment browser for correlative measurements

C. Ramakrishnan; A. Bieri; N. Sauter; S. Roizard; P. Ringler et al. 

Bmc Bioinformatics. 2014. Vol. 15, p. 84. DOI : 10.1186/1471-2105-15-84.

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2013

Cryo-electron microscopy of membrane proteins

K. N. Goldie; P. Abeyrathne; F. Kebbel; M. Chami; P. Ringler et al. 

Electron Microscopy; Humana Press, 2013-12-02. p. 325-41.

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Structure of the Dodecameric Yersinia enterocolitica Secretin YscC and Its Trypsin-Resistant Core

J. Kowal; M. Chami; P. Ringler; S. A. Mueller; M. Kudryashev et al. 

Structure. 2013-12-01. Vol. 21, num. 12, p. 2152-2161. DOI : 10.1016/j.str.2013.09.012.

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Growth of Large and Highly Ordered 2D Crystals of a K + Channel, Structural Role of Lipidic Environment (vol 105, pg 398, 2013)

R. De Zorzi; W. V. Nicholson; J. M. Guigner; F. Erne-Brand; H. Stahlberg et al. 

Biophysical Journal. 2013-09-01. Vol. 105, num. 5, p. 1285-1285. DOI : 10.1016/j.bpj.2013.08.005.

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Single-cell lysis for visual analysis by electron microscopy

S. Kemmerling; S. A. Arnold; B. A. Bircher; N. Sauter; C. Escobedo et al. 

Journal of Structural Biology. 2013-09-01. Vol. 183, num. 3, p. 467-473. DOI : 10.1016/j.jsb.2013.06.012.

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Vaccinia Virus Entry Is Followed by Core Activation and Proteasome-Mediated Release of the Immunomodulatory Effector VH1 from Lateral Bodies

F. I. Schmidt; C. K. E. Bleck; L. Reh; K. Novy; B. Wollscheid et al. 

Cell Reports. 2013-08-01. Vol. 4, num. 3, p. 464-476. DOI : 10.1016/j.celrep.2013.06.028.

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Structure and Substrate-Induced Conformational Changes of the Secondary Citrate/Sodium Symporter CitS Revealed by Electron Crystallography

F. Kebbel; M. Kurz; M. Arheit; M. G. Gruetter; H. Stahlberg 

Structure. 2013-07-01. Vol. 21, num. 7, p. 1243-1250. DOI : 10.1016/j.str.2013.05.011.

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Growth of Large and Highly Ordered 20 Crystals of a K+ Channel, Structural Role of Lipidic Environment

R. De Zorzi; W. V. Nicholson; J-M. Guigner; F. Erne-Brand; H. Stahlberg et al. 

Biophysical Journal. 2013-07-01. Vol. 105, num. 2, p. 398-408. DOI : 10.1016/j.bpj.2013.05.054.

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Bridging from conventional marketed immediate release formulations to new tamper resistant alternatives

H. Stahlberg; M. Brett; J. Ossig; S. Schwier; A. Philipp 

The Journal of Pain. 2013-04-01. Vol. 14, num. 4, p. S70-S70. DOI : 10.1016/j.jpain.2013.01.617.

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Image Processing of 2D Crystal Images

M. Arheit; D. Castaño-Díez; R. Thierry; B. R. Gipson; X. Zeng et al. 

Electron Crystallography of Soluble and Membrane Proteins; 2013. p. 171-194.

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Cryo-electron tomography reveals four-membrane architecture of the Plasmodium apicoplast

L. Lemgruber; M. Kudryashev; C. Dekiwadia; D. T. Riglar; J. Baum et al. 

Malaria Journal. 2013-01-01. Vol. 12, num. 1, p. 25. DOI : 10.1186/1475-2875-12-25.

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In situ structural analysis of the Yersinia enterocolitica injectisome

M. Kudryashev; M. Stenta; S. Schmelz; M. Amstutz; U. Wiesand et al. 

Elife. 2013. Vol. 2, p. e00792. DOI : 10.7554/eLife.00792.

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Molecular assembly of the aerolysin pore reveals a swirling membrane-insertion mechanism

M. T. Degiacomi; I. Lacovache; L. Pernot; M. Chami; M. Kudryashev et al. 

Nature Chemical Biology. 2013. Vol. 9, num. 10, p. 623-629. DOI : 10.1038/Nchembio.1312.

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Thermal Unfolding of a Mammalian Pentameric Ligand-gated Ion Channel Proceeds at Consecutive, Distinct Steps

M. B. Tol; C. Deluz; G. Hassaine; A. Graff; H. Stahlberg et al. 

Journal of Biological Chemistry. 2013. Vol. 288, p. 5756-5769. DOI : 10.1074/jbc.M112.422287.

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2012

Automation of image processing in electron crystallography

M. Arheit; D. Castano-Diez; R. Thierry; B. R. Gipson; X. Zeng et al. 

Electron Crystallography of Soluble and Membrane Proteins; Humana Press, 2012-10-07. p. 313-30.

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Merging of image data in electron crystallography

M. Arheit; D. Castano-Diez; R. Thierry; P. Abeyrathne; B. R. Gipson et al. 

Electron Crystallography of Soluble and Membrane Proteins; Humana Press, 2012-10-07. p. 195-209.

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RNAi Screening Reveals Proteasome- and Cullin3-Dependent Stages in Vaccinia Virus Infection

J. Mercer; B. Snijder; R. Sacher; C. Burkard; C. K. E. Bleck et al. 

Cell Reports. 2012-10-01. Vol. 2, num. 4, p. 1036-1047. DOI : 10.1016/j.celrep.2012.09.003.

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The application of graphene as a sample support in transmission electron microscopy

R. S. Pantelic; J. C. Meyer; U. Kaiser; H. Stahlberg 

Solid State Communications. 2012-08-01. Vol. 152, num. 15, p. 1375-1382. DOI : 10.1016/j.ssc.2012.04.038.

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Structural basis for chirality and directional motility of Plasmodium sporozoites

M. Kudryashev; S. Muenter; L. Lemgruber; G. Montagna; H. Stahlberg et al. 

Cellular Microbiology. 2012-07-30. Vol. 14, num. 11, p. 1757-1768. DOI : 10.1111/j.1462-5822.2012.01836.x.

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Characterization of the motion of membrane proteins using high-speed atomic force microscopy

I. Casuso; J. Khao; M. Chami; P. Paul-Gilloteaux; M. Husain et al. 

Nature Nanotechnology. 2012-07-08. Vol. 7, num. 8, p. 525-529. DOI : 10.1038/NNANO.2012.109.

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Limiting factors in single particle cryo electron tomography

M. Kudryashev; D. Castano-Diez; H. Stahlberg 

Computational and Structural Biotechnology Journal. 2012-07-01. Vol. 1, num. 2, p. e201207002. DOI : 10.5936/csbj.201207002.

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Mus81-Mms4 Functions as a Single Heterodimer To Cleave Nicked Intermediates in Recombinational DNA Repair

E. K. Schwartz; W. D. Wright; K. T. Ehmsen; J. E. Evans; H. Stahlberg et al. 

Molecular and Cellular Biology. 2012-05-29. Vol. 32, num. 15, p. 3065-3080. DOI : 10.1128/MCB.00547-12.

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Dynamo: A flexible, user-friendly development tool for subtomogram averaging of cryo-EM data in high-performance computing environments

D. Castano-Diez; M. Kudryashev; M. Arheit; H. Stahlberg 

Journal of Structural Biology. 2012-05-01. Vol. 178, num. 2, p. 139-151. DOI : 10.1016/j.jsb.2011.12.017.

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Assessing the benefits of focal pair cryo-electron tomography

M. Kudryashev; H. Stahlberg; D. Castano-Diez 

Journal of Structural Biology. 2012-05-01. Vol. 178, num. 2, p. 88-97. DOI : 10.1016/j.jsb.2011.10.004.

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Structure and Function of Purified Monoclonal Antibody Dimers Induced by Different Stress Conditions

R. Paul; A. Graff-Meyer; H. Stahlberg; M. E. Lauer; A. C. Rufer et al. 

Pharmaceutical Research. 2012-04-05. Vol. 29, num. 8, p. 2047-2059. DOI : 10.1007/s11095-012-0732-6.

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Projection Structure of the Secondary Citrate/Sodium Symporter CitS at 6 angstrom Resolution by Electron Crystallography

F. Kebbel; M. Kurz; M. G. Gruetter; H. Stahlberg 

Journal of Molecular Biology. 2012-04-01. Vol. 418, num. 01.févr., p. 117-126. DOI : 10.1016/j.jmb.2012.02.016.

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Iterative Transform Algorithms for 3D Reconstruction of 2D Crystals

X. Z. –; Y. C. –; O. H. –; H. Stahlberg 

Journal of Next Generation Information Technology. 2012-02-29. Vol. 3, num. 1, p. 28-35. DOI : 10.4156/jnit.vol3.issue1.4.

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Connecting mu-fluidics to electron microscopy

S. Kemmerling; J. Ziegler; G. Schweighauser; S. A. Arnold; D. Giss et al. 

Journal of Structural Biology. 2012-01-01. Vol. 177, num. 1, p. 128-134. DOI : 10.1016/j.jsb.2011.11.001.

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Ionic liquids as matrices in microfluidic sample deposition for high-mass matrix-assisted laser desorption/ionization mass spectrometry

S. Weidmann; S. Kemmerling; S. Maedler; H. Stahlberg; T. Braun et al. 

European Journal of Mass Spectrometry. 2012-01-01. Vol. 18, num. 3, p. 279-286. DOI : 10.1255/ejms.1182.

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Complete Lateral and Angular Diffusion and Protein-Protein Interaction Description of a Membrane Protein

I. Casuso; J-P. Duneau; M. Chami; P. Paul-Gilloteaux; M. Husain et al. 

Biophysical Journal. 2012-01-01. Vol. 102, num. 3, p. 413A-414A. DOI : 10.1016/j.bpj.2011.11.2261.

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Interactions of CCR5, the Main HIV Coreceptor, with Rantes and Other Ligands

S. Morin; L. Nisius; M. Wiktor; F. Kebbel; H. Stahlberg et al. 

Biophysical Journal. 2012-01-01. Vol. 102, num. 3, p. 239A-240A. DOI : 10.1016/j.bpj.2011.11.1319.

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2011

Rad51 paralogues Rad55-Rad57 balance the antirecombinase Srs2 in Rad51 filament formation

J. Liu; L. Renault; X. Veaute; F. Fabre; H. Stahlberg et al. 

Nature. 2011-10-23. Vol. 479, num. 7372, p. 245-U129. DOI : 10.1038/nature10522.

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Oxidative Doping Renders Graphene Hydrophilic, Facilitating Its Use As a Support in Biological TEM

R. S. Pantelic; J. W. Suk; Y. Hao; R. S. Ruoff; H. Stahlberg 

Nano Letters. 2011-10-12. Vol. 11, num. 10, p. 4319-4323. DOI : 10.1021/nl202386p.

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Interaction of complexes I, III, and IV within the bovine respirasome by single particle cryoelectron tomography

N. V. Dudkina; M. Kudryashev; H. Stahlberg; E. J. Boekema 

Proceedings of the National Academy of Sciences. 2011-08-29. Vol. 108, num. 37, p. 15196-15200. DOI : 10.1073/pnas.1107819108.

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Automatic recovery of missing amplitudes and phases in tilt-limited electron crystallography of two-dimensional crystals

B. R. Gipson; D. J. Masiel; N. D. Browning; J. Spence; K. Mitsuoka et al. 

Physical Review E. 2011-07-22. Vol. 84, num. 1, p. 11916. DOI : 10.1103/PhysRevE.84.011916.

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Polymer-based cell-free expression of ligand-binding family B G-protein coupled receptors without detergents

C. Klammt; M. H. Perrin; I. Maslennikov; L. Renault; M. Krupa et al. 

Protein Science. 2011-05-03. Vol. 20, num. 6, p. 1030-1041. DOI : 10.1002/pro.636.

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Graphene: Substrate preparation and introduction

R. S. Pantelic; J. W. Suk; C. W. Magnuson; J. C. Meyer; P. Wachsmuth et al. 

Journal of Structural Biology. 2011-04-01. Vol. 174, num. 1, p. 234-238. DOI : 10.1016/j.jsb.2010.10.002.

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3D Reconstruction of 2D Crystals

X. Zeng; J. E. Glover; O. Hughes; H. Stahlberg 

2011-01-01. 49th Annual Association-for-Computing-Machinery (ACM) Southeast Conference (ACMSE)49th Annual Association-for-Computing-Machinery (ACM) Southeast Conference (ACMSE). p. 160-165. DOI : 10.1145/2016039.2016084.

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2010

Filling the missing cone: Automatic recovery of data in tilt-limited microscopy

H. Stahlberg; X. Zeng; D. J. Masiel; N. Browning; J. Spence et al. 

Acta Crystallographica Section A Foundations of Crystallography. 2010-08-29. Vol. 66, p. S17-S17. DOI : 10.1107/S0108767310099642.

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An optical and microPET assessment of thermally-sensitive liposome biodistribution in the Met-1 tumor model: Importance of formulation

E. E. Paoli; D. E. Kruse; J. W. Seo; H. Zhang; A. Kheirolomoom et al. 

Journal of Controlled Release. 2010-04-02. Vol. 143, num. 1, p. 13-22. DOI : 10.1016/j.jconrel.2009.12.010.

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Preparation of 2D Crystals of Membrane Proteins for High-Resolution Electron Crystallography Data Collection

P. D. Abeyrathne; M. Chami; R. S. Pantelic; K. N. Goldie; H. Stahlberg 

Cryo-EM Part A Sample Preparation and Data Collection; Elsevier, 2010-01-01. p. 25-43.

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3D Reconstruction from 2D Crystal Image and Diffraction Data

A. D. Schenk; D. Castano-Diez; B. Gipson; M. Arheit; X. Zeng et al. 

Cryo-EM, Part B: 3-D Reconstruction; Elsevier, 2010-01-01. p. 101-129.

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2009

High-resolution low-dose scanning transmission electron microscopy

J. P. Buban; Q. Ramasse; B. Gipson; N. D. Browning; H. Stahlberg 

Journal of Electron Microscopy. 2009-11-14. Vol. 59, num. 2, p. 103-112. DOI : 10.1093/jmicro/dfp052.

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Coassembly of Mgm1 isoforms requires cardiolipin and mediates mitochondrial inner membrane fusion

R. M. DeVay; L. Dominguez-Ramirez; L. L. Lackner; S. Hoppins; H. Stahlberg et al. 

The Journal of Cell Biology. 2009-09-14. Vol. 186, num. 6, p. 793-803. DOI : 10.1083/jcb.200906098.

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Structural variability of edge dislocations in a SrTiO(3) low-angle [001] tilt grain boundary

J. P. Buban; M. Chi; D. J. Masiel; J. P. Bradley; B. Jiang et al. 

Journal of Materials Research. 2009-07-01. Vol. 24, num. 7, p. 2191-2199. DOI : 10.1557/JMR.2009.0259.

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Crystal Structures of Limulus SAP-Like Pentraxin Reveal Two Molecular Aggregations

A. K. Shrive; I. Burns; H-T. Chou; H. Stahlberg; P. B. Armstrong et al. 

Journal of Molecular Biology. 2009-03-01. Vol. 386, num. 5, p. 1240-1254. DOI : 10.1016/j.jmb.2009.01.008.

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Membrane activity of a C-reactive protein

J. M. Harrington; H-T. Chou; T. Gutsmann; C. Gelhaus; H. Stahlberg et al. 

FEBS Letters. 2009-02-20. Vol. 583, num. 6, p. 1001-1005. DOI : 10.1016/j.febslet.2009.02.019.

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2007 annual progress report synopsis of the Center for Structures of Membrane Proteins

R. M. Stroud; S. Choe; J. Holton; H. R. Kaback; W. Kwiatkowski et al. 

Journal of Structural and Functional Genomics. 2009-01-16. Vol. 10, num. 2, p. 193-208. DOI : 10.1007/s10969-008-9058-3.

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2008

Low-dose aberration corrected cryo-electron microscopy of organic specimens

J. E. Evans; C. Hetherington; A. Kirkland; L-Y. Chang; H. Stahlberg et al. 

Ultramicroscopy. 2008-11-01. Vol. 108, num. 12, p. 1636-1644. DOI : 10.1016/j.ultramic.2008.06.004.

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Bridging across length scales: Multi-scale ordering of supported lipid bilayers via lipoprotein self-assembly and surface patterning

M. S. Vinchurkar; D. A. Bricarello; J. O. Lagerstedt; J. P. Buban; H. Stahlberg et al. 

Journal of the American Chemical Society. 2008-08-01. Vol. 130, num. 33, p. 11164-11169. DOI : 10.1021/ja803110v.

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2dx – Automated 3D structure reconstruction from 2D crystal data

B. Gipson; X. Zeng; H. Stahlberg 

Microscopy and Microanalysis. 2008-08-01. Vol. 14, num. S2, p. 1290-1291. DOI : 10.1017/S1431927608081919.

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Membrane pore formation by pentraxin proteins from Limulus, the American horseshoe crab

J. M. Harrington; H-T. Chou; T. Gutsmann; C. Gelhaus; H. Stahlberg et al. 

Biochemical Journal. 2008-07-15. Vol. 413, num. 2, p. 305-313. DOI : 10.1042/BJ20071357.

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The fold of alpha-synuclein fibrils

M. Vilar; H-T. Chou; T. Luehrs; S. K. Maji; D. Riek-Loher et al. 

Proceedings of the National Academy of Sciences. 2008-06-12. Vol. 105, num. 25, p. 8637-8642. DOI : 10.1073/pnas.0712179105.

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Molecular electron microscopy: State of the art and current challenges

H. Stahlberg; T. Walz 

ACS Chemical Biology. 2008-05-01. Vol. 3, num. 5, p. 268-281. DOI : 10.1021/cb800037d.

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2007

Automatic lattice determination for two-dimensional crystal images

X. Zeng; B. Gipson; Z. Y. Zheng; L. Renault; H. Stahlberg 

Journal of Structural Biology. 2007-12-01. Vol. 160, num. 3, p. 353-361. DOI : 10.1016/j.jsb.2007.08.008.

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2dx_merge: Data management and merging for 2D crystal images

B. Gipson; X. Zeng; H. Stahlberg 

Journal of Structural Biology. 2007-12-01. Vol. 160, num. 3, p. 375-384. DOI : 10.1016/j.jsb.2007.09.011.

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Electron crystallography of membrane proteins

B. Hankamer; R. Glaeser; H. Stahlberg 

Journal of Structural Biology. 2007-12-01. Vol. 160, num. 3, p. 263-264. DOI : 10.1016/j.jsb.2007.11.001.

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A maximum likelihood approach to two-dimensional crystals

X. Zeng; H. Stahlberg; N. Grigorieff 

Journal of Structural Biology. 2007-12-01. Vol. 160, num. 3, p. 362-374. DOI : 10.1016/j.jsb.2007.09.013.

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2dx – User Friendly Image Processing (and Merging) for 2D Crystals

B. Gipson; Zeng; H. Stahlberg; R. Wouts 

Microscopy and Microanalysis. 2007-09-01. Vol. 13, num. S03, p. 160–161. DOI : 10.1017/S1431927607080804.

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The structure of the prokaryotic cyclic nucleotide-modulated potassium channel MIoK1 at 16 angstrom resolution

P-L. Chiu; M. D. Pagel; J. Evans; H-T. Chou; X. Zeng et al. 

Structure. 2007-09-01. Vol. 15, num. 9, p. 1053-1064. DOI : 10.1016/j.str.2007.06.020.

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Oocyte CD9 is enriched on the microvillar membrane and required for normal microvillar shape and distribution

K. E. Runge; J. E. Evans; Z-Y. He; S. Gupta; K. L. McDonald et al. 

Developmental Biology. 2007-04-01. Vol. 304, num. 1, p. 317-325. DOI : 10.1016/j.ydbio.2006.12.041.

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Structural and kinetic studies of induced fit in xylulose kinase from Escherichia coli

E. Di Luccio; B. Petschacher; J. Voegtli; H-T. Chou; H. Stahlberg et al. 

Journal of Molecular Biology. 2007-01-01. Vol. 365, num. 3, p. 783-798. DOI : 10.1016/j.jmb.2006.10.068.

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2dx – User-friendly image processing for 2D crystals

B. Gipson; X. Zeng; Z. Y. Zhang; H. Stahlberg 

Journal of Structural Biology. 2007-01-01. Vol. 157, num. 1, p. 64-72. DOI : 10.1016/j.jsb.2006.07.020.

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Electron Crystallography of Membrane Proteins

H-T. Chou; J. E. Evans; H. Stahlberg 

Electron Microscopy; 2007. p. 331-343.

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2006

Correction: Functional modulation of IFT kinesins extends the sensory repertoire of ciliated neurons in Caenorhabditis elegans

J. E. Evans; J. J. Snow; A. L. Gunnarson; G. Ou; H. Stahlberg et al. 

The Journal of Cell Biology. 2006-12-04. Vol. 175, num. 5, p. 837-837. DOI : 10.1083/jcb.200509115520061120c.

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A homotetrameric kinesin-5, KLP61F, bundles microtubules and antagonizes Ncd in motility assays

L. Tao; A. Mogilner; G. Civelekogiu-Scholey; R. Wollman; J. Evans et al. 

Current Biology. 2006-12-01. Vol. 16, num. 23, p. 2293-2302. DOI : 10.1016/j.cub.2006.09.064.

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Milestones in electron crystallography

L. Renault; H-T. Chou; P-L. Chiu; R. M. Hill; X. Zeng et al. 

Journal of Computer-Aided Molecular Design. 2006-11-11. Vol. 20, num. 07.août, p. 519-527. DOI : 10.1007/s10822-006-9075-x.

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Applications of Atomic Scale Scanning Transmission Electron Microscopy

N. Browning; R. Erni; C. Mitterbauer; L. Fu; M. Chi et al. 

Microscopy and Microanalysis. 2006-07-31. Vol. 12, num. S02, p. 134-135. DOI : 10.1017/S143192760606627X.

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Cryo-Electron Microscopy Analysis of a 105 kDa Protein Particle: The Xylulose Kinase from E. Coli

Chou; E. d. Luccio; D. Wilson; H. Stahlberg 

Microscopy and Microanalysis. 2006-07-31. Vol. 12, num. S02, p. 408-409. DOI : 10.1017/S1431927606066530.

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Avoiding Charge Induced Drift In Vitrified Biological Specimens Through Scanning Transmission Electron Microscopy

G. Nicotra; Chou; H. Stahlberg; N. Browning 

Microscopy and Microanalysis. 2006-07-31. Vol. 12, num. S02, p. 246-247. DOI : 10.1017/S1431927606063070.

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Double hexameric ring assembly of the type III protein translocase ATPase HrcN

S. A. Mueller; C. Pozidis; R. Stone; C. Meesters; M. Chami et al. 

Molecular Microbiology. 2006-06-01. Vol. 61, num. 1, p. 119-125. DOI : 10.1111/j.1365-2958.2006.05219.x.

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Functional modulation of IFT kinesins extends the sensory repertoire of ciliated neurons in Caenorhabditis elegans (vol 172, pg 663, 2006)

J. E. Evans; J. J. Snow; A. L. Gunnarson; G. Ou; H. Stahlberg et al. 

The Journal of Cell Biology. 2006-03-06. Vol. 172, num. 6, p. 949-949. DOI : 10.1083/jcb.20050911520060224c.

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Functional modulation of IFT kinesins extends the sensory repertoire of ciliated neurons in Caenorhabditis elegans

J. Evans; J. Snow; A. Gunnarson; G. Ou; H. Stahlberg et al. 

The Journal of Cell Biology. 2006-02-21. Vol. 172, num. 5, p. 663-669. DOI : 10.1083/jcb.200509115.

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2005

The 4.5 angstrom structure of human AQP2

A. Schenk; P. Werten; S. Scheuring; B. de Groot; S. Muller et al. 

Journal of Molecular Biology. 2005-07-01. Vol. 350, num. 2, p. 278-289. DOI : 10.1016/j.jmb.2005.04.030.

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2004

Oligomeric structure of the Bacillus subtilis cell division protein DivIVA determined by transmission electron microscopy

H. Stahlberg; E. Kutejova; K. Muchova; M. Gregorini; A. Lustig et al. 

Molecular Microbiology. 2004-04-28. Vol. 52, num. 5, p. 1281-1290. DOI : 10.1111/j.1365-2958.2004.04074.x.

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2003

Iplt-image processing library and toolkit for the electron microscopy community

A. Philippsen; A. Schenk; H. Stahlberg; A. Engel 

Journal of Structural Biology. 2003-10-01. Vol. 144, num. 01.févr., p. 4-12. DOI : 10.1016/j.jsb.2003.09.032.

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Type III protein translocase – Hrcn is a peripheral membrane ATPase that is activated by oligomerization

C. Pozidis; A. Chalkiadaki; A. Gomez-Serrano; H. Stahlberg; I. Brown et al. 

Journal of Biological Chemistry. 2003-05-06. Vol. 278, num. 28, p. 25816-25824. DOI : 10.1074/jbc.M301903200.

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2002

Assessing the structure of membrane proteins: combining different methods gives the full picture

H. Stahlberg; A. Engel; A. Philippsen 

Biochemistry and Cell Biology. 2002-10-01. Vol. 80, num. 5, p. 563-568. DOI : 10.1139/O02-160.

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Progress in the analysis of membrane protein structure and function

P. Werten; H. Remigy; B. de Groot; D. Fotiadis; A. Philippsen et al. 

FEBS Letters. 2002-08-29. Vol. 529, num. 1, p. 65-72. DOI : 10.1016/S0014-5793(02)03290-8.

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Sampling the conformational space of membrane protein surfaces with the AFM

S. Scheuring; D. Muller; H. Stahlberg; H. Engel; A. Engel 

European Biophysics Journal. 2002-06-01. Vol. 31, num. 3, p. 172-178. DOI : 10.1007/s00249-001-0197-8.

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Charting and unzipping the surface layer of Corynebacterium glutamicum with the atomic force microscope

S. Scheuring; H. Stahlberg; M. Chami; C. Houssin; J. Rigaud et al. 

Molecular Microbiology. 2002-05-07. Vol. 44, num. 3, p. 675-684. DOI : 10.1046/j.1365-2958.2002.02864.x.

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Aquaglyceroporins: Channel proteins with a conserved core, multiple functions, and variable surfaces

A. Engel; H. Stahlberg 

International Review of Cytology; 2002. p. 75-104.

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2001

Two-dimensional crystals: a powerful approach to assess structure, function and dynamics of membrane proteins

H. Stahlberg; D. Fotiadis; S. Scheuring; H. Remigy; T. Braun et al. 

FEBS Letters. 2001-08-28. Vol. 504, num. 3, p. 166-172. DOI : 10.1016/S0014-5793(01)02746-6.

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ATP synthase: constrained stoichiometry of the transmembrane rotor

D. Muller; N. Dencher; T. Meier; P. Dimroth; K. Suda et al. 

FEBS Letters. 2001-08-28. Vol. 504, num. 3, p. 219-222. DOI : 10.1016/S0014-5793(01)02708-9.

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Bacterial Na+-ATP synthase has an undecameric rotor

H. Stahlberg; D. Muller; K. Suda; D. Fotiadis; A. Engel et al. 

EMBO reports. 2001-03-01. Vol. 2, num. 3, p. 229-233. DOI : 10.1093/embo-reports/kve047.

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Electron Cryomicroscopy

J. Dubochet; H. Stahlberg 

Encyclopedia of Life Sciences; 2001. p. a0002999.

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The aquaporin superfamily: Structure and function

H. Stahlberg; B. Heymann; K. Mitsuoka; Y. Fuyijoshi; A. Engel 

Aquaporins; Elsevier, 2001-01-01. p. 39-119.

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2000

The 6.9-angstrom structure of GlpF: A basis for homology modeling of the glycerol channel from Escherichia coli

H. Stahlberg; T. Braun; B. de Groot; A. Philippsen; M. Borgnia et al. 

Journal of Structural Biology. 2000-11-01. Vol. 132, num. 2, p. 133-141. DOI : 10.1006/jsbi.2000.4317.

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The 3.7 angstrom projection map of the glycerol facilitator GlpF: a variant of the aquaporin tetramer

T. Braun; A. Philippsen; S. Wirtz; M. Borgnia; P. Agre et al. 

EMBO reports. 2000-08-01. Vol. 1, num. 2, p. 183-189. DOI : 10.1093/embo-reports/kvd022.

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Surface tongue-and-groove contours on lens MIP facilitate cell-to-cell adherence

D. Fotiadis; L. Hasler; D. Muller; H. Stahlberg; J. Kistler et al. 

Journal of Molecular Biology. 2000-07-01. Vol. 300, num. 4, p. 779-789. DOI : 10.1006/jmbi.2000.3920.

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The aquaporin sidedness revisited

S. Scheuring; P. Tittmann; H. Stahlberg; P. Ringler; M. Borgnia et al. 

Journal of Molecular Biology. 2000-06-01. Vol. 299, num. 5, p. 1271-1278. DOI : 10.1006/jmbi.2000.3811.

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Proton-powered turbine of a plant motor

H. Seelert; A. Poetsch; N. A. Dencher; A. Engel; H. Stahlberg et al. 

Nature. 2000-05-25. Vol. 405, num. 6785, p. 418-419. DOI : 10.1038/35013148.

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Domain structure of secretin PulD revealed by limited proteolysis and electron microscopy

N. Nouwen; H. Stahlberg; A. Pugsley; A. Engel 

The EMBO Journal. 2000-05-15. Vol. 19, num. 10, p. 2229-2236. DOI : 10.1093/emboj/19.10.2229.

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1999

High resolution AFM topographs of the Escherichia coli water channel aquaporin Z

S. Scheuring; P. Ringler; M. Borgnia; H. Stahlberg; D. Muller et al. 

The EMBO Journal. 1999-09-15. Vol. 18, num. 18, p. 4981-4987. DOI : 10.1093/emboj/18.18.4981.

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Structure of the water channel AqpZ from Escherichia coli revealed by electron crystallography

P. Ringler; M. Borgnia; H. Stahlberg; P. Maloney; P. Agre et al. 

Journal of Molecular Biology. 1999-09-01. Vol. 291, num. 5, p. 1181-1190. DOI : 10.1006/jmbi.1999.3031.

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Mitochondrial Lon of Saccharomyces cerevisiae is a ring-shaped protease with seven flexible subunits

H. Stahlberg; E. Kutejova; K. Suda; B. Wolpensinger; A. Lustig et al. 

Proceedings of the National Academy of Sciences. 1999-06-08. Vol. 96, num. 12, p. 6787-6790. DOI : 10.1073/pnas.96.12.6787.

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The reaction center complex from the green sulfur bacterium Chlorobium tepidum: A structural analysis by scanning transmission electron microscopy

H. Remigy; H. Stahlberg; D. Fotiadis; S. Muller; B. Wolpensinger et al. 

Journal of Molecular Biology. 1999-04-01. Vol. 290, num. 4, p. 851-858. DOI : 10.1006/jmbi.1999.2925.

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1998

Friction anisotropy and asymmetry of a compliant monolayer induced by a small molecular tilt

M. Liley; D. Gourdon; D. Stamou; U. Meseth; T. Fischer et al. 

Science. 1998-04-10. Vol. 280, num. 5361, p. 273-275. DOI : 10.1126/science.280.5361.273.

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Are the light-harvesting I complexes from Rhodospirillum rubrum arranged around the reaction center in a square geometry?

H. Stahlberg; J. Dubochet; H. Vogel; R. Ghosh 

Journal of Molecular Biology. 1998. Vol. 282, num. 4, p. 819-831. DOI : 10.1006/jmbi.1998.1975.

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The reaction center of the photounit of Rhodospirillum rubrum is anchored to the light-harvesting complex with four-fold rotational disorder

H. Stahlberg; J. Dubochet; H. Vogel; R. Ghosh 

Photosynthesis Research. 1998. Vol. 55, num. 2-3, p. 363-368. DOI : 10.1023/A:1005964123955.

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1997

Chloroplast F0F1 ATP synthase imaged by atomic force microscopy

D. Neff; S. Tripathi; K. Middendorf; H. Stahlberg; H. Butt et al. 

Journal of Structural Biology. 1997-07-01. Vol. 119, num. 2, p. 139-148. DOI : 10.1006/jsbi.1997.3891.

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1996

Sulfur-bearing lipids for the covalent attachment of supported lipid bilayers to gold surfaces: a detailed characterization and analysis

C. Duschl; M. Liley; H. Lang; A. Ghandi; S. M. Zakeeruddin et al. 

Materials Science and Engineering C. 1996. Vol. 4, num. 1, p. 7-18. DOI : 10.1016/0928-4931(95)00123-9.

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The End.