Publications

You will find below the list of all publications related to the Global Health Institute at the School of Life Sciences.

Should you want to select specific publications by topics or authors, please use the EPFL scientific publications search engine.

2024

Cold stress-induced autophagy and apoptosis disorders are mainly mediated by AMPK/PPAR/PI3K/AKT/mTOR pathways

D. Wang; Y. Tian; Q. Wang; Y. Zhang; B. Ye et al. 

Aquaculture. 2024-03-30. Vol. 583, p. 740574. DOI : 10.1016/j.aquaculture.2024.740574.

The CRL5-SPSB3 ubiquitin ligase targets nuclear cGAS for degradation

P. Xu; Y. Liu; C. Liu; B. Guey; L. Li et al. 

Nature. 2024-02-28. DOI : 10.1038/s41586-024-07112-w.

Bacteroides thetaiotaomicron metabolic activity decreases with polysaccharide molecular weight

J. P. H. Wong; N. Chillier; M. Fischer-Stettler; S. C. Zeeman; T. J. Battin et al. 

Mbio. 2024-02-20. DOI : 10.1128/mbio.02599-23.

Mechanisms and functions of protein S-acylation

F. S. Mesquita; L. Abrami; M. E. Linder; S. X. Bamji; B. C. Dickinson et al. 

Nature Reviews Molecular Cell Biology. 2024-02-14. DOI : 10.1038/s41580-024-00700-8.

The dynamic genetic determinants of increased transcriptional divergence in spermatids

J. Panten; T. Heinen; C. Ernst; N. Eling; R. E. Wagner et al. 

Nature Communications. 2024-02-10. Vol. 15, num. 1, p. 1272. DOI : 10.1038/s41467-024-45133-1.

A common NFKB1 variant detected through antibody analysis in UK Biobank predicts risk of infection and allergy

A. Y. Chong; N. Brenner; A. Jimenez-Kaufmann; A. Cortes; M. Hill et al. 

American Journal Of Human Genetics. 2024-02-01. Vol. 111, num. 2. DOI : 10.1016/j.ajhg.2023.12.013.

A First-in-Human Randomized Study to Assess the Safety, Tolerability, Pharmacokinetics, and Neutralization Profile of Two Investigational Long-Acting Anti-SARS-CoV-2 Monoclonal Antibodies

N. Moullan; J. Asiago; K. Stecco; S. Hadi; M. Albizem et al. 

Infectious Diseases and Therapy. 2024-01-14. DOI : 10.1007/s40121-023-00908-9.

Rare predicted loss-of-function variants of type I IFN immunity genes are associated with life-threatening COVID-19 (vol 15, 22, 2023)

D. Matuozzo; E. Talouarn; A. Marchal; P. Zhang; J. Manry et al. 

Genome Medicine. 2024-01-06. Vol. 16, num. 1, p. 6. DOI : 10.1186/s13073-023-01278-0.

Revitalizing antibiotic discovery and development through in vitro modelling of in-patient conditions

J. Sollier; M. Basler; P. Broz; P. S. Dittrich; K. Drescher et al. 

Nature Microbiology. 2024-01-04. DOI : 10.1038/s41564-023-01566-w.

Control of nuclear envelope dynamics during acute ER stress by LINC complexes disassembly and selective, asymmetric autophagy of the outer nuclear membrane

M. K. Kucinska; M. Molinari 

Autophagy. 2024-01-04. DOI : 10.1080/15548627.2023.2299123.

Vibrio cholerae pathogenicity island 2 encodes two distinct types of restriction systems

G. Vizzarro; A. Lemopoulos; D. W. Adams; M. Blokesch 

bioRxiv. 2024. DOI : 10.1101/2024.04.04.588119.

Mitochondria-specific signature of oxidative damage in human cancers: an excess of A>G on heavy chain of the mitochondrial genome in slow-dividing normoxic tissues

B. Efimenko; A. Mikhailova; K. Popadin 

2024-01-01. 56th Annual Conference of the European-Society-of-Human-Genetics (ESHG), Glasgow, SCOTLAND, JUN 10-13, 2023. p. 718-718.

Prevalence of actionable pharmacogenetic variants in a Swiss hospital cohort

F. Hodel; M. De Min; C. Thorball; J. Fellay 

2024-01-01. 56th Annual Conference of the European-Society-of-Human-Genetics (ESHG), Glasgow, SCOTLAND, JUN 10-13, 2023. p. 700-700.

Inborn errors of type I interferon immunity in patients with severe acute hepatitis E

A. Saadat; J. Gouttenoire; D. Moradpour; J. Fellay; M. F. Christinet 

2024-01-01. 56th Annual Conference of the European-Society-of-Human-Genetics (ESHG), Glasgow, SCOTLAND, JUN 10-13, 2023. p. 451-451.

Prevalence of clonal hematopoiesis in people living with HIV

V. Timonina; K. Popadin; J. Fellay 

2024-01-01. 56th Annual Conference of the European-Society-of-Human-Genetics (ESHG), Glasgow, SCOTLAND, JUN 10-13, 2023. p. 443-444.

Aneuploid human embryos are associated with increased maternal age, poor embryo morphology, high mitochondrial content and advanced development day of the biopsy: an analysis of 15’000 embryonic genomes

M. Ri; N. Ree; M. Tofilo; A. Kirillova; I. Zvereva et al. 

2024-01-01. 56th Annual Conference of the European-Society-of-Human-Genetics (ESHG), Glasgow, SCOTLAND, JUN 10-13, 2023. p. 354-354.

The impact of human genetics on Mycobacterium tuberculosis intra-host evolution

Z. M. Xu; M. Zwyer; D. Brites; H. Hiza; M. Reinhard et al. 

2024-01-01. 56th Annual Conference of the European-Society-of-Human-Genetics (ESHG), Glasgow, SCOTLAND, JUN 10-13, 2023. p. 346-346.

Low mitochondrial content marks high health status of human euploid embryos

K. Popadin; M. Ri; N. Ree; M. Tofilo; I. Zvereva et al. 

2024-01-01. 56th Annual Conference of the European-Society-of-Human-Genetics (ESHG), Glasgow, SCOTLAND, JUN 10-13, 2023. p. 101-101.

A Cluster of Evolutionarily Recent KRAB Zinc Finger Proteins Protects Cancer Cells from Replicative Stress–Induced Inflammation

F. Martins; O. Rosspopoff; J. Carlevaro-Fita; R. Forey; S. Offner et al. 

Cancer Research. 2024.  p. OF1-OF19. DOI : 10.1158/0008-5472.CAN-23-1237.

Reply to Dages et al: You AIn’t using it right-artificial intelligence progress in allergy

D. Lawless 

Journal Of Allergy And Clinical Immunology. 2024-01-01. Vol. 153, num. 1, p. 355-356. DOI : 10.1016/j.jaci.2023.09.023.

Rescue of secretion of rare-disease-associated misfolded mutant glycoproteins in UGGT1 knock-out mammalian cells

G. Tax; K. P. Guay; L. Pantalone; M. Ceci; T. Solda et al. 

Traffic. 2024-01-01. Vol. 25, num. 1, p. e12927. DOI : 10.1111/tra.12927.

Genome sequences of Vibrio cholerae strains isolated in the DRC between 2009 and 2012

A. Lemopoulos; B. Miwanda; N. C. Drebes Dorr; S. Stutzmann; D. Bompangue et al. 

Microbiology Resource Announcements. 2024. DOI : 10.1128/mra.00827-23.

Transposable elements mediate genetic effects altering the expression of nearby genes in colorectal cancer

N. M. R. Lykoskoufis; E. Planet; H. Ongen; D. Trono; E. T. Dermitzakis 

Nature Communications. 2024. Vol. 15, num. 749. DOI : 10.1038/s41467-023-42405-0.

Ancestral genome reconstruction enhances transposable element annotation by identifying degenerate integrants

W. Matsushima; E. Planet; D. Trono 

Cell Genomics. 2024. Vol. 4, p. 100497. DOI : 10.1016/j.xgen.2024.100497.

Meeting our Makers: Uncovering the cis-regulatory activity of transposable elements using statistical learning

C. D. S-T. Pulver / D. Trono (Dir.)  

Lausanne, EPFL, 2024. 

Single-cell analysis of the interactions between Mycobacterium tuberculosis and macrophages

O. Rutschmann / J. McKinney (Dir.)  

Lausanne, EPFL, 2024. 

Exploring the role of cGAS-STING-mediated inflammation in age-associated neurodegeneration and antitumor immunity

N. E. Samson / A. Ablasser (Dir.)  

Lausanne, EPFL, 2024. 

Deconvolution of ex-vivo drug screening data and bulk tissue expression predicts the abundance and viability of cancer cell subpopulations

A. Coudray / D. Trono; G. La Manno (Dir.)  

Lausanne, EPFL, 2024. 

2023

Reanalysis of mtDNA mutations of human primordial germ cells (PGCs) reveals NUMT contamination and suggests that selection in PGCs may be positive

Z. Fleischmann; A. C-‘Heureux; M. Franco; S. Oreshkov; S. Annis et al. 

Mitochondrion. 2023-12-16. Vol. 74, p. 101817. DOI : 10.1016/j.mito.2023.10.005.

The HLA-B*57:01 allele corresponds to a very large MHC haploblock likely explaining its massive effect for HIV-1 elite control

M. Rahmouni; L. De Marco; J-L. Spadoni; M. Tison; R. Medina-Santos et al. 

Frontiers In Immunology. 2023-12-11. Vol. 14, p. 1305856. DOI : 10.3389/fimmu.2023.1305856.

Inborn errors of type I interferon immunity in patients with symptomatic acute hepatitis E

A. Saadat; J. Gouttenoire; P. Ripellino; D. Semela; S. Amar et al. 

Hepatology. 2023-12-08. DOI : 10.1097/HEP.0000000000000701.

Predicting type 2 diabetes risk before and after solid organ transplantation using polygenic scores in a Danish cohort

Q. dos Santos; P. Leung; C. W. Thorball; B. Ledergerber; J. Fellay et al. 

Frontiers In Molecular Biosciences. 2023-12-07. Vol. 10, p. 1282412. DOI : 10.3389/fmolb.2023.1282412.

Genomics of Preaxostyla Flagellates Illuminates the Path Towards the Loss of Mitochondria

L. V. F. Novak; S. C. Treitli; J. Pyrih; P. Halakuc; S. V. Pipaliya et al. 

Plos Genetics. 2023-12-01. Vol. 19, num. 12, p. e1011050. DOI : 10.1371/journal.pgen.1011050.

Basic Mechanisms of Immunometabolites in Shaping the Immune Response

D. G. Ryan; C. G. Peace; A. Hooftman 

Journal Of Innate Immunity. 2023-11-23. DOI : 10.1159/000535452.

Autoantibodies against type I IFNs in humans with alternative NF-κB pathway deficiency

T. Le Voyer; A. V. Parent; X. Liu; A. Cederholm; A. Gervais et al. 

Nature. 2023-11-08. DOI : 10.1038/s41586-023-06717-x.

Tau accumulation in degradative organelles is associated to lysosomal stress

E. Piovesana; C. Magrin; M. Ciccaldo; M. Sola; M. Bellotto et al. 

Scientific Reports. 2023-10-21. Vol. 13, num. 1, p. 18024. DOI : 10.1038/s41598-023-44979-7.

PSGL-1 is an evolutionarily conserved antiviral restriction factor

C. Jiang; M. Mei; Y. Liu; M. Hou; J. Jiao et al. 

Mbio. 2023-10-03.  p. e0038723. DOI : 10.1128/mbio.00387-23.

Toxic Effects of Koumine on the Early-Life Development Stage of Zebrafish

D. Wang; X. Leng; Y. Tian; J. Liu; J. Zou et al. 

Toxics. 2023-10-01. Vol. 11, num. 10, p. 853. DOI : 10.3390/toxics11100853.

Refining S-acylation: Structure, regulation, dynamics, and therapeutic implications

M. U. Anwar; F. G. van der Goot 

Journal Of Cell Biology. 2023-09-27. Vol. 222, num. 11, p. e202307103. DOI : 10.1083/jcb.202307103.

Inborn Errors of Type I Interferon Immunity in Patients with Severe Acute Hepatitis E

A. Saadat; J. Gouttenoire; P. Ripellino; D. Semela; S. Amar et al. 

2023-09-11.  p. 14S-14S.

Inflammatory mitochondrial nucleic acids as drivers of pathophysiology

C. G. Peace; A. Hooftman; D. G. Ryan 

Clinical And Translational Medicine. 2023-09-01. Vol. 13, num. 9, p. e1403. DOI : 10.1002/ctm2.1403.

Amidation of glutamate residues in mycobacterial peptidoglycan is essential for cell wall cross-linking

M. T. Shaku; K. L. Ocius; A. J. Apostolos; M. M. Pires; M. S. Vannieuwenhze et al. 

Frontiers In Cellular And Infection Microbiology. 2023-08-24. Vol. 13, p. 1205829. DOI : 10.3389/fcimb.2023.1205829.

Archaeal type IV pili stabilize Haloferax volcanii biofilms in flow

P. D. Odermatt; P. Nussbaum; S. Monnappa; L. Tala; Z. Li et al. 

Current Biology. 2023-08-07. Vol. 33, num. 15, p. 3265-3271. DOI : 10.1016/j.cub.2023.06.055.

Investigating the composition and recruitment of the mycobacterial ImuA’-ImuB-DnaE2 mutasome

S. Gessner; Z. A-M. Martin; M. A. Reiche; J. A. Santos; R. Dinkele et al. 

Elife. 2023-08-02. Vol. 12, p. e75628. DOI : 10.7554/eLife.75628.

Africa-specific human genetic variation near CHD1L associates with HIV-1 load

P. J. J. McLaren; I. Porreca; G. Iaconis; H. P. Mok; S. Mukhopadhyay et al. 

Nature. 2023-08-02. Vol. 620, p. 1025–1030. DOI : 10.1038/s41586-023-06370-4.

cGAS-STING drives ageing-related inflammation and neurodegeneration

M. F. Gulen; N. Samson; A. Keller; M. Schwabenland; C. Liu et al. 

Nature. 2023-08-02. Vol. 620, p. 374–380. DOI : 10.1038/s41586-023-06373-1.

Variation in African genomes linked to control of HIV

P. J. McLaren; J. Fellay 

Nature. 2023-08-02. DOI : 10.1038/d41586-023-02277-2.

Pseudomonas aeruginosa type IV pili actively induce mucus contraction to form biofilms in tissue-engineered human airways

T. Rossy; T. Distler; L. Meirelles; J. Pezoldt; J. Kim et al. 

Plos Biology. 2023-08-01. Vol. 21, num. 8, p. e3002209. DOI : 10.1371/journal.pbio.3002209.

Protein target highlights in CASP15: Analysis of models by structure providers

L. T. Alexander; J. Durairaj; A. Kryshtafovych; L. A. Abriata; Y. Bayo et al. 

Proteins-Structure Function And Bioinformatics. 2023-07-26. DOI : 10.1002/prot.26545.

A metagenome-wide association study of HIV disease progression in HIV controllers

L. M. Real; M. E. Saez; A. Corma-Gomez; A. Gonzalez-Perez; C. Thorball et al. 

Iscience. 2023-07-21. Vol. 26, num. 7, p. 107214. DOI : 10.1016/j.isci.2023.107214.

Ecology-relevant bacteria drive the evolution of host antimicrobial peptides in Drosophila

M. A. Hanson; L. Grollmus; B. Lemaitre 

Science. 2023-07-21. Vol. 381, num. 6655, p. eadg5725. DOI : 10.1126/science.adg5725.

Prevalence of CFTR variants in primary immunodeficiency patients with bronchiectasis is an important modifying cofactor

D. Lawless; H. L. Allen; J. E. D. Thaventhiran; S. Goddard; O. S. Burren et al. 

Journal Of Allergy And Clinical Immunology. 2023-07-01. Vol. 152, num. 1, p. 257-265. DOI : 10.1016/j.jaci.2023.01.035.

Hits and Misses: Digital Contact Tracing in a Pandemic

M. Garry; R. Zajac; L. Hope; M. Salathe; L. Levine et al. 

Perspectives On Psychological Science. 2023-06-30. DOI : 10.1177/17456916231179365.

Autoantibodies neutralizing type I IFNs underlie West Nile virus encephalitis in & SIM;40% of patients

A. Gervais; F. Rovida; M. A. Avanzini; S. Croce; A. Marchal et al. 

Journal Of Experimental Medicine. 2023-06-22. Vol. 220, num. 9, p. e20230661. DOI : 10.1084/jem.20230661.

Fluid flow structures gut microbiota biofilm communities by distributing public goods

J. P. H. Wong; M. F-Stettler; S. C. Zeeman; T. J. Battin; A. Persat et al. 

Proceedings Of The National Academy Of Sciences Of The United States Of America. 2023-06-20. Vol. 120, num. 25, p. e2217577120. DOI : 10.1073/pnas.2217577120.

TMX4-driven LINC complex disassembly and asymmetric autophagy of the nuclear envelope upon acute ER stress

M. K. Kucinska; J. Fedry; C. Galli; D. Morone; A. Raimondi et al. 

Nature Communications. 2023-06-13. Vol. 14, num. 1, p. 3497. DOI : 10.1038/s41467-023-39172-3.

ER-to-lysosome-associated degradation in a nutshell: mammalian, yeast, and plant ER-phagy as induced by misfolded proteins

M. Rudinskiy; M. Molinari 

Febs Letters. 2023-06-10. DOI : 10.1002/1873-3468.14674.

Biofilm formation on human immune cells is a multicellular predation strategy of Vibrio cholerae

L. Vidakovic; S. Mikhaleva; H. Jeckel; V. Nisnevich; K. Strenger et al. 

Cell. 2023-06-08. Vol. 186, num. 12, p. 2690-+. DOI : 10.1016/j.cell.2023.05.008.

Multiancestry sex-stratified genomic associations with HIV viral load and controller status from the ICGH

C. Vergara; J. F. Tuff; J. Int Collaboration Genomics HIV ICGH; J. Fellay; P. Duggal et al. 

Jci Insight. 2023-06-08. Vol. 8, num. 11, p. 170068. DOI : 10.1172/jci.insight.170068.

Poloxamers Have Vaccine-Adjuvant Properties by Increasing Dissemination of Particulate Antigen at Distant Lymph Nodes

M. Lamrayah; C. Phelip; R. Rovera; C. Coiffier; N. Lazhar et al. 

Molecules. 2023-06-01. Vol. 28, num. 12, p. 4778. DOI : 10.3390/molecules28124778.

Association of a Polygenic Risk Score With Osteoporosis in People Living With HIV: The Swiss HIV Cohort Study

J. M. Schwenke; C. W. Thorball; I. C. Schoepf; L. Ryom; B. Hasse et al. 

Journal Of Infectious Diseases. 2023-05-24. DOI : 10.1093/infdis/jiad179.

A polygenic risk score to predict sudden cardiac arrest in patients with cardiovascular disease

E. Porcu; C. Thorball; A. P. Porretta; E. Pruvot; K. Wiskott et al. 

2023-05-11. 55th European-Society-of-Human-Genetics (ESHG) Conference, Vienna, AUSTRIA, JUN 11-14, 2022. p. 691-691.

Deamination of adenine to guanine is a signature of oxidative damage in mitochondrial DNA

A. Mikhailova; E. Tretiakov; V. Shamanskiy; D. Iliushchenko; V. Yurov et al. 

2023-05-11. 55th European-Society-of-Human-Genetics (ESHG) Conference, Vienna, AUSTRIA, JUN 11-14, 2022. p. 648-648.

Host genomic susceptibility to severe respiratory syncytial virus infection

A. Saadat; D. Lawless; J. Fellay 

2023-05-11. 55th European-Society-of-Human-Genetics (ESHG) Conference, Vienna, AUSTRIA, JUN 11-14, 2022. p. 163-164.

A polygenic risk score improves the prediction of cardiovascular risk associated with obstructive sleep-apnoea

C. Thorball; M. Berger; G. Solelhac; A. Waeber; C. Redin et al. 

2023-05-11. 55th European-Society-of-Human-Genetics (ESHG) Conference, Vienna, AUSTRIA, JUN 11-14, 2022. p. 145-146.

Secondary structure of the human mitochondrial genome affects formation of deletions

V. Shamanskiy; A. A. Mikhailova; E. O. Tretiakov; K. Ushakova; A. G. Mikhailova et al. 

Bmc Biology. 2023-05-08. Vol. 21, num. 1, p. 103. DOI : 10.1186/s12915-023-01606-1.

Viral Genetic Determinants of Prolonged Respiratory Syncytial Virus Infection Among Infants in a Healthy Term Birth Cohort

D. Lawless; C. G. McKennan; S. R. Das; T. Junier; Z. M. Xu et al. 

Journal Of Infectious Diseases. 2023-05-01. Vol. 227, num. 10, p. 1194-1202. DOI : 10.1093/infdis/jiac442.

Epigenetic ageing accelerates before antiretroviral therapy and decelerates after viral suppression in people with HIV in Switzerland: a longitudinal study over 17 years

I. C. Schoepf; A. Esteban-Cantos; C. W. Thorball; B. Rodes; P. Reiss et al. 

Lancet Healthy Longevity. 2023-05-01. Vol. 4, num. 5, p. E211-E218. DOI : 10.1016/S2666-7568(23)00037-5.

Rare predicted loss-of-function variants of type I IFN immunity genes are associated with life-threatening COVID-19

D. Matuozzo; E. Talouarn; A. Marchal; P. Zhang; J. Manry et al. 

Genome Medicine. 2023-04-05. Vol. 15, num. 1, p. 22. DOI : 10.1186/s13073-023-01173-8.

Cryo-EM structures and binding of mouse and human ACE2 to SARS-CoV-2 variants of concern indicate that mutations enabling immune escape could expand host range

D. Ni; P. Turelli; B. Beckert; S. Nazarov; E. Uchikawa et al. 

PLOS Pathogens. 2023-04-05. Vol. 19, num. 4, p. e1011206. DOI : 10.1371/journal.ppat.1011206.

Antimicrobial peptides do not directly contribute to aging in Drosophila, but improve lifespan by preventing dysbiosis

M. A. Hanson; B. Lemaitre 

Disease Models & Mechanisms. 2023-04-01. Vol. 16, num. 4, p. dmm049965. DOI : 10.1242/dmm.049965.

Back-to-Africa introductions of Mycobacterium tuberculosis as the main cause of tuberculosis in Dar es Salaam, Tanzania

M. Zwyer; L. Rutaihwa; E. Windels; J. Hella; F. Menardo et al. 

Plos Pathogens. 2023-04-01. Vol. 19, num. 4, p. e1010893. DOI : 10.1371/journal.ppat.1010893.

Uptake-independent killing of macrophages by extracellular Mycobacterium tuberculosis aggregates

C. Toniolo; N. Dhar; J. D. McKinney 

Embo Journal. 2023-03-15. DOI : 10.15252/embj.2023113490.

COVID-Twitter-BERT: A natural language processing model to analyse COVID-19 content on Twitter

M. Muller; M. Salathe; P. E. Kummervold 

Frontiers In Artificial Intelligence. 2023-03-14. Vol. 6, p. 1023281. DOI : 10.3389/frai.2023.1023281.

Live Birth of a Healthy Child in a Couple with Identical mtDNA Carrying a Pathogenic c.471_477delTTTAAAAinsG Variant in the MOCS2 Gene

M. Tofilo; N. Voronova; L. Nigmatullina; E. Kuznetsova; V. Timonina et al. 

Genes. 2023-03-01. Vol. 14, num. 3, p. 720. DOI : 10.3390/genes14030720.

An Advanced Alkaline Al-Air Fuel Cell Using L-Ascorbic Acid Interface Layer upon Al Anode via Gradient Anti-corrosion

M. Wei; K. Wang; Y. Zuo; H. Wang; P. Zhang et al. 

Acs Sustainable Chemistry & Engineering. 2023-02-22. DOI : 10.1021/acssuschemeng.3c00214.

Two antagonistic response regulators control Pseudomonas aeruginosa polarization during mechanotaxis

M. J. Kuhn; H. Macmillan; L. Tala; Y. Inclan; R. Patino et al. 

Embo Journal. 2023-02-16. DOI : 10.15252/embj.2022112165.

Material Substrate Physical Properties Control Pseudomonas aeruginosa Biofilm Architecture

A. Cont; J. Vermeil; A. Persat 

Mbio. 2023-02-14. DOI : 10.1128/mbio.03518-22.

Associations of genetic and infectious risk factors with coronary heart disease

F. Hodel; Z. M. Xu; C. W. Thorball; R. de la Harpe; P. Letang-Mathieu et al. 

Elife. 2023-02-14. Vol. 12, p. e79742. DOI : 10.7554/eLife.79742.

Species-specific regulation of XIST by the JPX/FTX orthologs

O. Rosspopoff; E. Cazottes; C. Huret; A. Loda; A. J. Collier et al. 

Nucleic Acids Research. 2023-02-02. DOI : 10.1093/nar/gkad029.

Leukocyte Count and Coronary Artery Disease Events in People With Human Immunodeficiency Virus: A Longitudinal Study

E. F. Avery; J. N. Kleynhans; B. Ledergerber; I. C. Schoepf; C. W. Thorball et al. 

Clinical Infectious Diseases. 2023-01-23. DOI : 10.1093/cid/ciad033.

Combining European and US risk prediction models with polygenic risk scores to refine cardiovascular prevention: the CoLaus|PsyCoLaus Study

R. de La Harpe; C. W. Thorball; C. Redin; S. Fournier; O. Mueller et al. 

European Journal Of Preventive Cardiology. 2023-01-18. DOI : 10.1093/eurjpc/zwad012.

Dynamics of CLIMP-63 S-acylation control ER morphology

P. A. Sandoz; R. A. Denhardt-Eriksson; L. Abrami; L. A. Abriata; G. Spreemann et al. 

Nature Communications. 2023-01-17. Vol. 14, num. 1. DOI : 10.1038/s41467-023-35921-6.

Statistical learning quantifies transposable element-mediated cis-regulation

C. Pulver; D. Grun; J. Duc; S. Sheppard; E. Planet et al. 

Genome Biology. 2023. Vol. 24, num. 258. DOI : 10.1186/s13059-023-03085-7.

SARS-CoV-2 hijacks a cell damage response, which induces transcription of a more efficient Spike S-acyltransferase

F. S. Mesquita; L. Abrami; L. Bracq; N. Panyain; V. Mercier et al. 

Nature Communications. 2023. Vol. 14, num. 7302. DOI : 10.1038/s41467-023-43027-2.

New ingredients for old recipes

O. Rosspopoff; F. Martins; D. Trono 

Nature Genetics. 2023. DOI : 10.1038/s41588-023-01591-9.

The Effects of Spatial Organization and Fluid Flow on the Social Interactions in Microbial Communities

J. P. H. Wong / A. L. A. Persat; T. I. Battin (Dir.)  

Lausanne, EPFL, 2023. 

Interactions between pili affect the outcome of bacterial competition driven by the type VI secretion system

S. B. Otto; R. M. Servajean; A. Lemopoulos; A-F. Bitbol; M. Blokesch 

bioRxiv. 2023.  p. 61. DOI : 10.1101/2023.10.25.564063.

Broadly potent anti-SARS-CoV-2 antibody shares 93% of epitope with ACE2 and provides full protection in monkeys

C. Fenwick; P. Turelli; Y. Duhoo; K. Lau; C. Herate et al. 

Journal of Infection. 2023. DOI : 10.1016/j.jinf.2023.10.008.

Functional characterization of Drosophila melanogaster immune effectors

A. L. Carboni / B. Lemaitre (Dir.)  

Lausanne, EPFL, 2023. 

Take a walk on the KRAB side

O. Rosspopoff; D. Trono 

Trends in Genetics. 2023. DOI : 10.1016/j.tig.2023.08.003.

Genetic features and genomic targets of human KRAB-zinc finger proteins

J. de Tribolet-Hardy; C. W. Thorball; R. Forey; E. Planet; J. Duc et al. 

Genome Research. 2023. DOI : 10.1101/gr.277722.123.

Host-Pathogen Interactions Through the Genomic Lens

Z. M. Xu / J. Fellay (Dir.)  

Lausanne, EPFL, 2023. 

KRAB zinc finger proteins link heterochromatin maintenance to replicative stress and inflammation in diffuse large B-cell lymphoma

F. A. Brandão Sanches Vong Martins / D. Trono; P. Turelli (Dir.)  

Lausanne, EPFL, 2023. 

Efficient and sensitive profiling of RNA–protein interactions using TLC-CLIP

C. Ernst; J. Duc; D. Trono 

Nucleic Acids Research. 2023. DOI : 10.1093/nar/gkad466.

DNA modifications impact natural transformation of Acinetobacter baumannii

N. Vesel; C. Iseli; N. Guex; A. Lemopoulos; M. Blokesch 

Nucleic Acids Research. 2023. Vol. gkad377. DOI : 10.1093/nar/gkad377.

Sporadic type VI secretion in seventh pandemic Vibrio cholerae

A. Proutière; N. C. Drebes Dorr; L. Bader; S. Stutzmann; L. C. Metzger et al. 

Microbiology. 2023. Vol. 169, num. 5. DOI : 10.1099/mic.0.001329.

The immunopeptidome landscape associated with T cell infiltration, inflammation and immune editing in lung cancer

A. I. Kraemer; C. Chong; F. Huber; H. Pak; B. J. Stevenson et al. 

Nature Cancer. 2023. DOI : 10.1038/s43018-023-00548-5.

Bacterial colonization in realistic environments: how mechanics impact biofilm formation in the wild and during infection

T. Rossy / A. L. A. Persat (Dir.)  

Lausanne, EPFL, 2023. 

Machine Learning in Protein Science De Novo Design of Site-Specific Protein Binders Using Surface Fingerprints

A. Van Hall-Beauvais; P. Gainza; S. Wehrle; A. Scheck; A. Marchand et al. 

2023-01-01. 36th Annual Symposium of the Protein-Society, San Francisco, CA, Jul 07-10, 2022.