The GECF offers a 10X Genomics Visium HD Spatial Transcriptomics service with the Histology Core Facility. This allows for transcriptome-wide mapping of genes expression onto tissue sections, down to single cell-like level and with concomitant H&E or IF staining.
An overview of the different available Visium methods is available HERE (under revision).
Our guidelines and submission forms are available here:
- probe-based (human/mouse/rat): GUIDELINES, FORM
- polyA-based (all eukaryotes): guidelines coming soon
In case Visium is not suited for your needs, we also offer the Curio methods, such as slide-tags (Curio Trekker).
Our new aviti24 sequencer also offers spatial omics abilities. Submissions are done HERE.
Finally, the SpatialOmics@EPFL web page presents a comprehensive overview of the other Spatial Omics options available at the School of Life Science.