Infectious disease spread in connected communities

Generalization and Personalization of Machine Learning for Multimodal Mobile Sensing in Everyday Life

The role of spatial epidemiology to support public health policies : case studies applied to health promotion, noncommunicable and infectious diseases in the canton of Vaud, Switzerland

Privacy-preserving contact tracing curbed COVID

M. Salathe 

Hits and Misses: Digital Contact Tracing in a Pandemic

M. Garry; R. Zajac; L. Hope; M. Salathe; L. Levine et al. 

COVID-Twitter-BERT: A natural language processing model to analyse COVID-19 content on Twitter

M. Muller; M. Salathe; P. E. Kummervold 

Dynamics of social media behavior before and after SARS-CoV-2 infection

F. Durazzi; F. Pichard; D. Remondini; M. Salathe 

Timeliness of online COVID-19 reports from official sources

L. Espinosa; O. Altunina; M. Salathe 

Deploying Decentralized, Privacy-Preserving Proximity Tracing

C. Troncoso; D. Bogdanov; E. Bugnion; S. Chatel; C. Cremers et al. 

The Food Recognition Benchmark: Using Deep Learning to Recognize Food in Images

S. P. Mohanty; G. Singhal; E. A. Scuccimarra; D. Kebaili; H. Heritier et al. 

Associations Between Device-Measured Physical Activity and Glycemic Control and Variability Indices Under Free-Living Conditions

D. El Fatouhi; H. Heritier; C. Allemann; L. Malisoux; N. Laouali et al. 

CrowdNotifier: Decentralized Privacy-Preserving Presence Tracing

W. Lueks; S. Gürses; M. Veale; E. Bugnion; M. Salathé et al. 

Toward a Common Performance and Effectiveness Terminology for Digital Proximity Tracing Applications

W. Lueks; J. Benzler; D. Bogdanov; G. Kirchner; R. Lucas et al. 

Supervised Learning Computer Vision Benchmark for Snake Species Identification From Photographs: Implications for Herpetology and Global Health

A. M. Durso; G. K. Moorthy; S. P. Mohanty; I. Bolon; M. Salathe et al. 

Modeling infectious disease dynamics towards informed public health interventions, with applications on COVID-19 and cholera

Clusters of science and health related Twitter users become more isolated during the COVID-19 pandemic

F. Durazzi; M. Muller; M. Salathe; D. Remondini 

Learning Self-Exciting Temporal Point Processes Under Noisy Observations

Digital proximity tracing on empirical contact networks for pandemic control

G. Cencetti; G. Santin; A. Longa; E. Pigani; A. Barrat et al. 

On the use of applied machine learning and digital infrastructure to leverage social media data in health and epidemiology

Early evidence of effectiveness of digital contact tracing for SARS-CoV-2 in Switzerland

M. Salathe; C. L. Althaus; N. Anderegg; D. Antonioli; T. Ballouz et al. 

A digital reconstruction of the 1630–1631 large plague outbreak in Venice

G. Lazzari; G. Colavizza; F. Bortoluzzi; D. Drago; A. Erboso et al. 

A research agenda for digital proximity tracing apps

V. W. Viktor; B. Sebastian; B. Edouard; P. M. Alan; S. Marcel et al. 

Assessing Public Opinion on CRISPR-Cas9: Combining Crowdsourcing and Deep Learning

M. Muller; M. Schneider; M. Salathe; E. Vayena 

Keep calm and carry on vaccinating: Is anti-vaccination sentiment contributing to declining vaccine coverage in England?

M. Edelstein; M. Muller; S. Ladhani; J. Yarwood; M. Salathe et al. 

Contact networks across ages: computational analysis of epidemiological dynamics

COVID-19 epidemic in Switzerland: on the importance of testing, contact tracing and isolation

S. Marcel; A. L. Christian; N. Richard; S. Silvia; H. Emma et al. 

Snakebite and snake identification: empowering neglected communities and health-care providers with AI

R. R. de Castaneda; A. M. Durso; N. Ray; J. L. Fernandez; D. J. Williams et al. 

Assessment of menstrual health status and evolution through mobile apps for fertility awareness

L. Symul; K. Wac; P. Hillard; M. Salathe 

WHO and ITU establish benchmarking process for artificial intelligence in health

T. Wiegand; R. Krishnamurthy; M. Kuglitsch; N. Lee; S. Pujari et al. 

Crowdbreaks: Tracking Health Trends Using Public Social Media Data and Crowdsourcing

M. M. Mueller; M. Salathe 

Assessing the Dynamics and Control of Droplet- and Aerosol-Transmitted Influenza Using an Indoor Positioning System

T. Smieszek; G. Lazzari; M. Salathé 

Digital epidemiology: what is it, and where is it going?

M. Salathe 

Likelihood-free Inference of Population Genetic Parameters from Time-Sampled Genetic Data

Localizing the Source of an Epidemic Using Few Observations

A field-based modelling framework of the ecohydrology of schistosomiasis

Critical dynamics in population vaccinating behavior

A. D. Pananos; T. M. Bury; C. Wang; J. Schonfeld; S. P. Mohanty et al. 

An ecological and digital epidemiology analysis on the role of human behavior on the 2014 Chikungunya outbreak in Martinique

B. Roche; B. Gaillard; L. Leger; R. Pelagie-Moutenda; T. Sochacki et al. 

Precision global health in the digital age

A. Flahault; A. Geissbuhler; I. Guessous; P. J. Guerin; I. Bolon et al. 

Spatially explicit modeling of cholera epidemics

Digital Pharmacovigilance and Disease Surveillance: Combining Traditional and Big-Data Systems for Better Public Health

M. Salathe 

Statistical physics of vaccination

Z. Wang; C. T. Bauch; S. Bhattacharyya; A. D’Onofrio; P. Manfredi et al. 

Using Deep Learning for Image-Based Plant Disease Detection

S. P. Mohanty; D. P. Hughes; M. Salathe 

Infectious Disease Containment Based on a Wireless Sensor System

X. Sun; Z. Lu; X. Zhang; M. Salathe; G. Cao 

Ethical challenges of big data in public health

E. Vayena; M. Salathé; L. C. Madoff; J. S. Brownstein 

Measles Vaccination Coverage and Cases among Vaccinated Persons

C. L. Althaus; M. Salathé 

Targeted vaccination based on a wireless sensor system

S. Xiao; L. Zongqing; Z. Xiaomei; M. Salathé; C. Guohong 

Modeling Individual-Level Infection Dynamics Using Social Network Information

S. Tuarob; C. Tucker; M. Salathé; N. Ram 

Identifying Adverse Effects of HIV Drug Treatment and Associated Sentiments Using Twitter

C. Adrover; T. Bodnar; Z. Huang; A. Telenti; M. Salathé 

An ensemble heterogeneous classification methodology for discovering health-related knowledge in social media messages

S. Tuarob; C. S. Tucker; M. Salathe; N. Ram 

Positive network assortativity of influenza vaccination at a high school: implications for outbreak risk and herd immunity

V. C. Barclay; T. Smieszek; J. He; G. Cao; J. J. Rainey et al. 

How should social mixing be measured: comparing web-based survey and sensor-based methods

T. Smieszek; V. C. Barclay; I. Seeni; J. J. Rainey; H. Gao et al. 

Two Sides of a Coin: Separating Personal Communication and Public Dissemination Accounts in Twitter

P. Yin; N. Ram; W-C. Lee; C. Tucker; S. Khandelwal et al. 

On the ground validation of online diagnosis with Twitter and medical records

T. Bodnar; V. Barclay; N. Ram; C. Tucker; M. Salathé 

Targeting HIV-related Medication Side Effects and Sentiment Using Twitter Data

C. Adrover; T. Bodnar; M. Salathé 

Influenza A (H7N9) and the importance of digital epidemiology

M. Salathé; C. C. Freifeld; S. R. Mekaru; A. F. Tomasulo; J. S. Brownstein 

The dynamics of health behavior sentiments on a large online social network

M. Salathé; D. Vu; S. Khandelwal; D. Hunter 

Validating models for disease detection using twitter

T. Bodnar; M. Salathé 

Complex social contagion makes networks more vulnerable to disease outbreaks

E. Campbell; M. Salathé 

A low-cost method to assess the epidemiological importance of individuals in controlling infectious disease outbreaks

T. Smieszek; M. Salathé 

Discovering health-related knowledge in social media using ensembles of heterogeneous features

S. Tuarob; C. Tucker; M. Salathé; N. Ram 

Understanding population displacements on location-based call records using road data

Z. Huang; U. Kumar; T. Bodnar; M. Salathé 

Synthesizing Social Proximity Networks by Combining Subjective Surveys with Digital Traces

H. Xia; J. Chen; M. Marathe; H. Mortveit; M. Salathé 

The Social Maintenance of Cooperation through Hypocrisy

T. Bodnar; M. Salathé 

Digital epidemiology

M. Salathé; L. Bengtsson; T. J. Bodnar; D. D. Brewer; J. S. Brownstein et al. 

Non-genetic inheritance and the patterns of antagonistic coevolution

R. Mostowy; J. Engelstädter; M. Salathé 

Governing the global commons with local institutions

T. Bodnar; M. Salathé 

Assessing vaccination sentiments with online social media: implications for infectious disease dynamics and control

M. Salathé; S. Khandelwal 

Measuring school contact networks using wireless sensor technology

J. Jones; M. Salathé; M. Feldman; M. Kazandjieva; J. Lee et al. 

Modelling the influence of human behaviour on the spread of infectious diseases: a review

S. Funk; M. Salathé; V. A. A. Jansen 

A high-resolution human contact network for infectious disease transmission

M. Salathé; M. Kazandjieva; J. W. Lee; P. Levis; M. W. Feldman et al. 

Dynamics and control of diseases in networks with community structure

M. Salathé; J. H. Jones 

Plague outbreaks in prairie dog populations explained by percolation thresholds of alternate host abundance

D. J. Salkeld; M. Salathé; P. Stapp; J. H. Jones 

Experiences in measuring a human contact network for epidemiology research

M. Kazandjieva; J. Lee; M. Salathé; M. Feldman; J. Jones et al. 

On the evolution of sexual reproduction in hosts coevolving with multiple parasites

R. Mostowy; M. Salathé; R. D. Kouyos; S. Bonhoeffer 

Early assessment of anxiety and behavioral response to novel swine-origin influenza A(H1N1)

J. H. Jones; M. Salathé 

Evolution of stochastic switching rates in asymmetric fitness landscapes

M. Salathé; J. Van Cleve; M. W. Feldman 

On the causes of selection for recombination underlying the red queen hypothesis

M. Salathé; R. D. Kouyos; S. Bonhoeffer 

The role of epistasis on the evolution of recombination in host-parasite coevolution

R. D. Kouyos; M. Salathé; S. P. Otto; S. Bonhoeffer 

The state of affairs in the kingdom of the Red Queen

M. Salathé; R. D. Kouyos; S. Bonhoeffer 

The effect of opinion clustering on disease outbreaks

M. Salathé; S. Bonhoeffer 

Rapid parasite adaptation drives selection for high recombination rates

M. Salathé; R. D. Kouyos; R. R. Regoes; S. Bonhoeffer 

Parasites lead to evolution of robustness against gene loss in host signaling networks

M. Salathé; O. S. Soyer 

The Red Queen and the persistence of linkage-disequilibrium oscillations in finite and infinite populations

R. D. Kouyos; M. Salathé; S. Bonhoeffer 

The evolution of complexity on the level of genes, individuals and populations

Signal transduction networks: topology, response and biochemical processes

O. S. Soyer; M. Salathé; S. Bonhoeffer 

The effect of multifunctionality on the rate of evolution in yeast

M. Salathé; M. Ackermann; S. Bonhoeffer 

Mutation accumulation in space and the maintenance of sexual reproduction

M. Salathé; R. Salathé; P. Schmid-Hempel; S. Bonhoeffer 

High epitope expression levels increase competition between T cells

A. Scherer; M. Salathé; S. Bonhoeffer 

Sexual selection and its effect on the fixation of an asexual clone

M. Salathé 

Neutral drift and polymorphism in gene-for-gene systems

M. Salathe; A. Scherer; S. Bonhoeffer 

The evolution of network topology by selective removal

M. Salathé; R. M. May; S. Bonhoeffer