Preprints
Zhan Tong Zhang, Jiří J. L. Vaníček
Zhan Tong Zhang, Jiří J. L. Vaníček
Zhan Tong Zhang, Jiří J. L. Vaníček
Alan Scheidegger, Nikolay V. Golubev, Jiri J. L. Vanicek
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× 2024 Journal Articles Finite-temperature vibronic spectra from the split-operator coherence thermofield dynamics Z. T. Zhang ; J. Vanicek
The Journal of Chemical Physics . 2024. Vol. 160 , num. 8 , p. 084103. DOI : 10.1063/5.0187823. High-order geometric integrators for the local cubic variational Gaussian wavepacket dynamics R. Moghaddasi Fereidani ; J. J. L. Vanicek
Journal Of Chemical Physics . 2024-01-28. Vol. 160 , num. 4 , p. 044113. DOI : 10.1063/5.0180070. Theses Applications of the thawed Gaussian approximation to electronic spectroscopy. E. Kletnieks / J. Vanicek (Dir.)
Lausanne , EPFL , 2024. High-order geometric integrators for the variational Gaussian wavepacket dynamics and application to vibronic spectra at finite temperature R. Moghaddasi Fereidani / J. Vanicek (Dir.)
Lausanne , EPFL , 2024. 2023 Journal Articles Isotope Effects on the Electronic Spectra of Ammonia from Ab Initio Semiclassical Dynamics E. Kletnieks ; Y. Calvino Alonso ; J. Vanicek
The Journal of Physical Chemistry . 2023-09-22. DOI : 10.1021/acs.jpca.3c04607. High-order geometric integrators for the variational Gaussian approximation R. Moghaddasi Fereidani ; J. Vanicek
The Journal of Chemical Physics . 2023-09-07. Vol. 159 , num. 9 . DOI : 10.1063/5.0165489. Family of Gaussian wavepacket dynamics methods from the perspective of a nonlinear Schrodinger equation J. J. L. Vanicek
Journal Of Chemical Physics . 2023-07-07. Vol. 159 , num. 1 , p. 014114. DOI : 10.1063/5.0146680. Sampling strategies for the Herman-Kluk propagator of the wavefunction F. Kroeninger ; C. Lasser ; J. J. L. Vanicek
Frontiers In Physics . 2023-03-23. Vol. 11 , p. 1106324. DOI : 10.3389/fphy.2023.1106324. 2022 Journal Articles Efficient Semiclassical Evaluation of Electronic Coherences in Polyatomic Molecules N. V. Golubev ; J. Vanicek
Chimia . 2022-06-01. Vol. 76 , num. 6 , p. 575-581. DOI : 10.2533/chimia.2022.575. Applicability of the Thawed Gaussian Wavepacket Dynamics to the Calculation of Vibronic Spectra of Molecules with Double-Well Potential Energy Surfaces br T. Begusic ; E. Tapavicza ; J. Vanicek
Journal Of Chemical Theory And Computation . 2022-05-10. Vol. 18 , num. 5 , p. 3065-3074. DOI : 10.1021/acs.jctc.2c00030. Search for long-lasting electronic coherence using on-the-fly ab initio semiclassical dynamics A. Scheidegger ; J. Vanicek ; N. V. Golubev
Journal Of Chemical Physics . 2022-01-21. Vol. 156 , num. 3 , p. 034104. DOI : 10.1063/5.0076609. Theses Efficient geometric integrators for the linear and nonlinear time-dependent Schrödinger equation J. Roulet / J. Vanicek (Dir.)
Lausanne , EPFL , 2022. High-order geometric integrators for nonadiabatic molecular quantum dynamics and their applications to explore conical intersections S. Choi / J. Vanicek (Dir.)
Lausanne , EPFL , 2022. 2021 Journal Articles An implicit split-operator algorithm for the nonlinear time-dependent Schrödinger equation J. Roulet ; J. Vanicek
The Journal of Chemical Physics . 2021-11-28. Vol. 155 , num. 20 , p. 204109. DOI : 10.1063/5.0071153. High-order geometric integrators for representation-free Ehrenfest dynamics S. Choi ; J. Vanicek
The Journal of Chemical Physics . 2021-09-23. Vol. 155 , num. 12 , p. 124104. DOI : 10.1063/5.0061878. Core-Valence Attosecond Transient Absorption Spectroscopy of Polyatomic Molecules N. V. Golubev ; J. Vaníček ; A. I. Kuleff
Physical Review Letters . 2021-09-16. Vol. 127 , num. 12 , p. 123001. DOI : 10.1103/PhysRevLett.127.123001. Efficient Semiclassical Dynamics for Vibronic Spectroscopy beyond Harmonic, Condon, and Zero-Temperature Approximations T. Begušić ; J. Vaníček
CHIMIA International Journal for Chemistry . 2021-04-01. Vol. 75 , num. 4 , p. 261-266. DOI : 10.2533/chimia.2021.261. How important are the residual nonadiabatic couplings for an accurate simulation of nonadiabatic quantum dynamics in a quasidiabatic representation? S. Choi ; J. Vaníček
The Journal of Chemical Physics . 2021-03-25. Vol. 154 , num. 12 , p. 124119. DOI : 10.1063/5.0046067. Finite-Temperature, Anharmonicity, and Duschinsky Effects on the Two-Dimensional Electronic Spectra from Ab Initio Thermo-Field Gaussian Wavepacket Dynamics T. Begušić ; J. Vaníček
The Journal of Physical Chemistry Letters . 2021-03-18. Vol. 12 , num. 11 , p. 2997-3005. DOI : 10.1021/acs.jpclett.1c00123. Time-reversible and norm-conserving high-order integrators for the nonlinear time-dependent Schrödinger equation: Application to local control theory J. Roulet ; J. Vaníček
The Journal of Chemical Physics . 2021-04-19. Vol. 154 , num. 15 , p. 154106. DOI : 10.1063/5.0050071. Tuning the Thermal Stability and Photoisomerization of Azoheteroarenes through Macrocycle Strain** S. Vela ; A. Scheidegger ; R. Fabregat ; C. Corminboeuf
Chemistry-A European Journal . 2021. Vol. 27 , num. 1 , p. 419-426. DOI : 10.1002/chem.202003926. Conference Papers Theses Efficient ab initio semiclassical dynamics for linear and nonlinear electronic spectroscopy T. Begusic / J. Vanicek (Dir.)
Lausanne , EPFL , 2021. Book Chapters Ab initio semiclassical evaluation of vibrationally resolved electronic spectra with thawed Gaussians J. Vanicek ; T. Begusic
Molecular Spectroscopy and Quantum Dynamics ; Elsevier , 2021. p. 199-229. 2020 Journal Articles Which form of the molecular Hamiltonian is the most suitable for simulating the nonadiabatic quantum dynamics at a conical intersection? S. Choi ; J. Vanicek
The Journal of Chemical Physics . 2020-12-02. Vol. 153 , num. 21 , p. 211101. DOI : 10.1063/5.0033410. On-the-fly ab initio semiclassical evaluation of third-order response functions for two-dimensional electronic spectroscopy T. Begušić ; J. Vaníček
The Journal of Chemical Physics . 2020-11-11. Vol. 153 , num. 18 , p. 184110. DOI : 10.1063/5.0031216. On-the-Fly ab initio Semiclassical Evaluation of Electronic Coherences in Polyatomic Molecules Reveals a Simple Mechanism of Decoherence N. V. Golubev ; T. Begusic ; J. Vanicek
Physical Review Letters . 2020-08-17. Vol. 125 , num. 8 , p. 083001. DOI : 10.1103/PhysRevLett.125.083001. On-the-fly ab initio semiclassical evaluation of vibronic spectra at finite temperature T. Begušić ; J. Vaníček
The Journal of Chemical Physics . 2020-07-08. Vol. 153 , num. 2 , p. 024105. DOI : 10.1063/5.0013677. Direct Observation of Aggregation-Induced Emission Mechanism J. Guan ; R. Wei ; A. Prlj ; J. Peng ; K-H. Lin et al.
Angewandte Chemie-International Edition . 2020-06-22. Vol. 59 , num. 35 , p. 14903-14909. DOI : 10.1002/anie.202004318. Semiclassical Approach to Photophysics Beyond Kasha’s Rule and Vibronic Spectroscopy Beyond the Condon Approximation. The Case of Azulene A. Prlj ; T. Begušić ; Z. T. Zhang ; G. C. Fish ; M. Wehrle et al.
Journal of Chemical Theory and Computation . 2020-03-02. Vol. 16 , num. 4 , p. 2617-2626. DOI : 10.1021/acs.jctc.0c00079. Effects of high pulse intensity and chirp in two-dimensional electronic spectroscopy of an atomic vapor M. Binz ; L. Bruder ; L. Chen ; M. F. Gelin ; W. Domcke et al.
Optics Express . 2020-08-31. Vol. 28 , num. 18 , p. 25806-25829. DOI : 10.1364/OE.396108. Variational approach to time-dependent fluorescence of a driven qubit Y. Yan ; L. Chen ; J. Luo ; Y. Zhao
Physical Review A . 2020-08-21. Vol. 102 , num. 2 , p. 023714. DOI : 10.1103/PhysRevA.102.023714. Instanton theory of ground-state tunneling splittings with general paths M. Erakovic ; C. L. Vaillant ; M. T. Cvitas
Journal Of Chemical Physics . 2020-02-28. Vol. 152 , num. 8 , p. 084111. DOI : 10.1063/1.5145278. 2019 Journal Articles A time-reversible integrator for the time-dependent Schrödinger equation on an adaptive grid S. Choi ; J. Vaníček
The Journal of Chemical Physics . 2019-12-16. Vol. 151 , num. 23 , p. 234102. DOI : 10.1063/1.5127856. Getting the Right Twist: Influence of Donor-Acceptor Dihedral Angle on Exciton Kinetics and Singlet-Triplet Gap in Deep Blue Thermally Activated Delayed Fluorescence Emitter S. Weissenseel ; N. A. Drigo ; L. G. Kudriashova ; M. Schmid ; T. Morgenstern et al.
Journal Of Physical Chemistry C . 2019-11-14. Vol. 123 , num. 45 , p. 27778-27784. DOI : 10.1021/acs.jpcc.9b08269. A combined on-the-fly/interpolation procedure for evaluating energy values needed in molecular simulations K. Karandashev ; J. Vaníček
The Journal of Chemical Physics . 2019-11-07. Vol. 151 , num. 17 , p. 174116. DOI : 10.1063/1.5124469. Efficient geometric integrators for nonadiabatic quantum dynamics. II. The diabatic representation J. Roulet ; S. Choi ; J. Vanicek
The Journal of Chemical Physics . 2019-05-28. Vol. 150 , num. 20 , p. 204113. DOI : 10.1063/1.5094046. Efficient geometric integrators for nonadiabatic quantum dynamics. I. The adiabatic representation S. Choi ; J. Vanicek
The Journal of Chemical Physics . 2019-05-28. Vol. 150 , num. 20 , p. 204112. DOI : 10.1063/1.5092611. Mechanisms of fluorescence quenching in prototypical aggregation-induced emission systems: excited state dynamics with TD-DFTB T. Tran ; A. Prlj ; K-H. Lin ; D. Hollas ; C. Corminboeuf
Physical Chemistry Chemical Physics . 2019-05-14. Vol. 21 , num. 18 , p. 9026-9035. DOI : 10.1039/c9cp00691e. Tunneling Splittings in Water Clusters from Path Integral Molecular Dynamics C. L. Vaillant ; D. J. Wales ; S. C. Althorpe
Journal Of Physical Chemistry Letters . 2019-11-21. Vol. 10 , num. 22 , p. 7300-7304. DOI : 10.1021/acs.jpclett.9b02951. Accelerating equilibrium isotope effect calculations. II. Stochastic implementation of direct estimators K. Karandashev ; J. Vaníček
The Journal of Chemical Physics . 2019-10-07. Vol. 151 , num. 13 , p. 134116. DOI : 10.1063/1.5124995. Single-Hessian thawed Gaussian approximation T. Begušić ; M. Cordova ; J. Vaníček
The Journal of Chemical Physics . 2019-04-19. Vol. 150 , num. 15 , p. 154117. DOI : 10.1063/1.5090122. 2018 Journal Articles On-the-fly ab initio semiclassical evaluation of time-resolved electronic spectra T. Begusic ; J. Roulet ; J. Vanicek
Journal Of Chemical Physics . 2018-12-28. Vol. 149 , num. 24 , p. 244115. DOI : 10.1063/1.5054586. On-the-fly ab initio three thawed Gaussians approximation: a semiclassical approach to Herzberg-Teller spectra T. Begušić ; A. Patoz ; M. Šulc ; J. Vaníček
Chemical Physics . 2018-08-03. Vol. 515 , p. 152-163. DOI : 10.1016/j.chemphys.2018.08.003. On-the-Fly Ab Initio Semiclassical Evaluation of Absorption Spectra of Polyatomic Molecules beyond the Condon Approximation A. Patoz ; T. Begušić ; J. Vaníček
The Journal of Physical Chemistry Letters . 2018. Vol. 9 , p. 2367-2372. DOI : 10.1021/acs.jpclett.8b00827. Theses Accelerating path integral evaluation of equilibrium and kinetic isotope effects K. Karandashev / J. Vanicek (Dir.)
Lausanne , EPFL , 2018. 2017 Journal Articles Ultrafast dynamics induced by the interaction of molecules with electromagnetic fields: Several quantum, semiclassical, and classical approaches S. Antipov ; S. Bhattacharyya ; K. El Hage ; Z-H. Xu ; M. Meuwly et al.
Structural Dynamics . 2017. Vol. 4 , num. 6 , p. 061509. DOI : 10.1063/1.4996559. Several Semiclassical Approaches to Time-resolved Spectroscopy J. Vanicek
CHIMIA International Journal for Chemistry . 2017. Vol. 71 , num. 5 , p. 283-287. DOI : 10.2533/chimia.2017.283. Accelerating equilibrium isotope effect calculations. I. Stochastic thermodynamic integration with respect to mass K. Karandashev ; J. Vanicek
Journal of Chemical Physics . 2017. Vol. 146 , num. 18 , p. 184102. DOI : 10.1063/1.4981260. Theses Geometric Integrators for Nonadiabatic Molecular Quantum Dynamics Induced by the Interaction with the Electromagnetic Field A. K. F. Patoz / J. Vanicek (Dir.)
Lausanne , EPFL , 2017. 2016 Journal Articles Path integral approach to the quantum fidelity amplitude J. Vanicek ; D. Cohen
Philosophical Transactions of the Royal Society A . 2016. Vol. 374 , num. 2069 , p. 20150164. DOI : 10.1098/rsta.2015.0164. 2015 Journal Articles Accelerating quantum instanton calculations of the kinetic isotope effects K. Karandashev ; J. Vanicek
Journal of Chemical Physics . 2015. Vol. 143 , num. 19 , p. 194104. DOI : 10.1063/1.4935701. On-the-fly ab initio semiclassical dynamics of floppy molecules: Absorption and photoelectron spectra of ammonia M. Wehrle ; S. Oberli ; J. Vanicek
Journal of Physical Chemistry A . 2015. Vol. 119 , num. 22 , p. 5685-5690. DOI : 10.1021/acs.jpca.5b03907. PACCMIT/PACCMIT-CDS: identifying microRNA targets in 3′ UTRs and coding sequences M. Šulc ; R. M. Marín ; H. S. Robins ; J. Vaníček
Nucleic Acids Research . 2015. Vol. 43 , num. W1 , p. W474-W479. DOI : 10.1093/nar/gkv457. Theses Evaluation and analysis of vibrationally resolved electronic spectra with ab initio semiclassical dynamics M. Wehrle / J. Vanicek (Dir.)
Lausanne , EPFL , 2015. 2014 Journal Articles Efficient on-the-fly ab initio semiclassical method for computing time-resolved nonadiabatic electronic spectra with surface hopping or Ehrenfest dynamics T. Zimmermann ; J. Vaníček
Journal of Chemical Physics . 2014. Vol. 141 , num. 13 , p. 134102. DOI : 10.1063/1.4896735. Predicting the genes regulated by microRNAs via binding sites in the 3′ untranslated and coding regions J. Vanicek
CHIMIA International Journal for Chemistry . 2014. Vol. 68 , num. 9 , p. 629-632. DOI : 10.2533/chimia.2014.629. On-the-fly ab initio semiclassical dynamics: Identifying degrees of freedom essential for emission spectra of oligothiophenes M. Wehrle ; M. Sulc ; J. Vanicek
Journal of Chemical Physics . 2014. Vol. 140 , num. 24 , p. 244114. DOI : 10.1063/1.4884718. Host miRNA regulation of human cytomegalovirus immediate early protein translation promotes viral latency C. M. O’Connor ; J. Vanicek ; E. A. Murphy
Journal of Virology . 2014. Vol. 88 , num. 10 , p. 5524-5532. DOI : 10.1128/JVI.00481-14. Kinetic isotope effect in malonaldehyde determined from path integral Monte Carlo simulations J. Huang ; M. Buchowiecki ; T. Nagy ; J. Vanicek ; M. Meuwly
Physical Chemistry Chemical Physics . 2014. Vol. 16 , num. 1 , p. 204-211. DOI : 10.1039/c3cp53698j. Student Projects Accelerating quantum dynamics calculations of time-resolved electronic spectra by optimizing Gaussian bases J. Rohrbach
2014. 2013 Journal Articles Imaginary-time nonuniform mesh method for solving the multidimensional Schroedinger equation: Fermionization and melting of quantum Lennard-Jones crystals A. Hernando de Castro ; J. Vanicek
Physical Review A . 2013. Vol. 88 , p. 062107. DOI : 10.1103/PhysRevA.88.062107. Monte Carlo evaluation of the equilibrium isotope effects using the Takahashi-Imada factorization of the Feynman path integral M. Buchowiecki ; J. Vanicek
Chemical Physics Letters . 2013. Vol. 588 , p. 11-16. DOI : 10.1016/j.cplett.2013.09.070. Role of sampling in evaluating classical time autocorrelation functions T. Zimmermann ; J. Vanicek
Journal of Chemical Physics . 2013. Vol. 139 , num. 10 , p. 104105. DOI : 10.1063/1.4820420. Improving the accuracy and efficiency of time-resolved electronic spectra calculations: Cellular dephasing representation with a prefactor E. Zambrano ; M. Sulc ; J. Vanicek
Journal of Chemical Physics . 2013. Vol. 139 , num. 5 , p. 054109. DOI : 10.1063/1.4817005. Relation of exact Gaussian basis methods to the dephasing representation: Theory and application to time-resolved electronic spectra M. Sulc ; H. Hernandez ; T. Martinez ; J. Vanicek
Journal of Chemical Physics . 2013. Vol. 139 , num. 3 , p. 034112. DOI : 10.1063/1.4813124. Searching the coding region for microRNA targets R. Marin ; M. Sulc ; J. Vanicek
RNA . 2013. Vol. 19 , p. 467-474. DOI : 10.1261/rna.035634.112. Student Projects Implementation of exact and approximate methods for nonadiabatic quantum molecular dynamics induced by the interaction with the electromagnetic field and their applications to local quantum control A. Patoz
2013. 2012 Journal Articles Analysis of the accessibility of CLIP bound sites reveals that nucleation of the miRNA:mRNA pairing occurs preferentially at the 3′-end of the seed match R. Marin ; F. Voellmy ; T. von Erlach ; J. Vanicek
RNA . 2012. Vol. 18 , num. 10 , p. 1760-1770. DOI : 10.1261/rna.033282.112. Evaluation of the importance of spin-orbit couplings in the nonadiabatic quantum dynamics with quantum fidelity and with its efficient “on-the-fly” ab initio semiclassical approximation T. Zimmermann ; J. Vanicek
Journal of Chemical Physics . 2012. Vol. 137 , p. 22A516. DOI : 10.1063/1.4738878. Accelerating the calculation of time-resolved electronic spectra with the cellular dephasing representation M. Sulc ; J. Vanicek
Molecular Physics . 2012. Vol. 110 , num. 9-10 , p. 945-955. DOI : 10.1080/00268976.2012.668971. Measuring nonadiabaticity of molecular quantum dynamics with quantum fidelity and with its efficient semiclassical approximation T. Zimmermann ; J. Vanicek
Journal of Chemical Physics . 2012. Vol. 136 , p. 094106. DOI : 10.1063/1.3690458. Optimal use of conservation and accessibility filters in microRNA target prediction R. Marin ; J. Vanicek
PLoS ONE . 2012. Vol. 7 , num. 2 , p. e32208. DOI : 10.1371/journal.pone.0032208. Theses On the Efficiency of Semiclassical and Classical Approximations of Quantum Fidelity in Many-Dimensional Systems C. Mollica / J. Vanicek (Dir.)
Lausanne , EPFL , 2012. Book Chapters Quantum Instanton Evaluation of the Kinetic Isotope Effects and of the Temperature Dependence of the Rate Constant J. Vanicek
Rate Constant Calculation for Thermal Reactions: Methods and Applications ; Hoboken, New Jersey : Wiley , 2012. p. 67-92. 2011 Journal Articles Efficient sampling avoids the exponential wall in classical simulations of fidelity C. Mollica ; T. Zimmermann ; J. Vanicek
Physical Review E . 2011. Vol. 84 , p. 066205. DOI : 10.1103/PhysRevE.84.066205. Beating the Efficiency of Both Quantum and Classical Simulations with a Semiclassical Method C. Mollica ; J. Vanicek
Physical Review Letters . 2011. Vol. 107 , p. 214101. DOI : 10.1103/PhysRevLett.107.214101. Beyond Transition State Theory: Accurate Description of Nuclear Quantum Effects on the Rate and Equilibrium Constants of Chemical Reactions Using Feynman Path Integrals J. Vanicek
Chimia . 2011. Vol. 65 , num. 9 , p. 715-719. DOI : 10.2533/chimia.2011.715. Accelerating Calculations of Ultrafast Time-Resolved Electronic Spectra with Efficient Quantum Dynamics Methods M. Wehrle ; M. Sulc ; J. Vanicek
Chimia . 2011. Vol. 65 , num. 5 , p. 334-338. DOI : 10.2533/chimia.2011.334. Efficient use of accessibility in microRNA target prediction R. Marin ; J. Vanicek
Nucleic Acids Research . 2011. Vol. 39 , num. 1 , p. 19-29. DOI : 10.1093/nar/gkq768. 2010 Journal Articles Proton Transfer Studied Using a Combined Ab Initio Reactive Potential Energy Surface with Quantum Path Integral Methodology K. Wong ; J. Sonnenberg ; F. Paesani ; T. Yamamoto ; J. Vanicek et al.
Journal of Chemical Theory and Computation . 2010. Vol. 6 , num. 9 , p. 2566-2580. DOI : 10.1021/ct900579k. Communications: Evaluation of the nondiabaticity of quantum molecular dynamics with the dephasing representation of quantum fidelity T. Zimmermann ; J. Vanicek
Journal of Chemical Physics . 2010. Vol. 132 , num. 24 , p. 241101/1-241101/4. DOI : 10.1063/1.3451266. Efficient evaluation of the accuracy of molecular quantum dynamics on an approximate analytical or interpolated ab initio potential energy surface T. Zimmermann ; J. Ruppen ; B. Li ; J. Vanicek
International Journal of Quantum Chemistry . 2010. Vol. 110 , num. 13 , p. 2426-2435. DOI : 10.1002/qua.22730. Direct evaluation of the temperature dependence of the rate constant based on the quantum instanton approximation M. R. Buchowiecki ; J. Vanicek
Journal of Chemical Physics . 2010. Vol. 132 , p. 194106/1-194106/10. DOI : 10.1063/1.3425617. Three applications of path integrals: equilibrium and kinetic isotope effects, and the temperature dependence of the rate constant of the [1,5] sigmatropic hydrogen shift in (Z)-1,3-pentadiene T. Zimmermann ; J. Vanicek
Journal of Molecular Modeling . 2010. Vol. 16 , num. 11 , p. 1779-1787. DOI : 10.1007/s00894-010-0711-y. Books 2009 Journal Articles Path integral evaluation of equilibrium isotope effects (vol 131, 024111, 2009) T. Zimmermann ; J. Vanicek
Journal Of Chemical Physics . 2009-07-28. Vol. 131 , num. 4 , p. 049903. DOI : 10.1063/1.3202533. Path integral evaluation of the equilibrium isotope effect in [1,5] sigmatropic hydrogen shift reactions T. Zimmermann ; J. Vanicek
Flash informatique . 2009. num. 8 , p. 37-40. Efficient evaluation of accuracy of molecular quantum dynamics using dephasing representation B. Li ; C. Mollica ; J. Vanicek
Journal of Chemical Physics . 2009. Vol. 131 , num. 4 , p. 041101/1-041101/4. DOI : 10.1063/1.3187240. Path integral evaluation of equilibrium isotope effects T. Zimmermann ; J. Vanicek
Journal of Chemical Physics . 2009. Vol. 131 , num. 2 , p. 024111/1-024111/13. DOI : 10.1063/1.3167353. 2008 Journal Articles Suppression of immediate-early viral gene expression by herpesvirus-coded microRNAs: Implications for latency E. Murphy ; J. Vanicek ; H. Robins ; T. Shenk ; A. J. Levine
Proceedings of the National Academy of Sciences of the United States of America . 2008. Vol. 105 , num. 14 , p. 5453-5458. DOI : 10.1073/pnas.0711910105. Books 2007 Journal Articles Efficient estimators for quantum instanton evaluation of the kinetic isotope effects: Application to the intramolecular hydrogen transfer in pentadiene J. Vanicek ; W. H. Miller
Journal of Chemical Physics . 2007. Vol. 127 , num. 11 , p. 114309/1-114309/9. DOI : 10.1063/1.2768930. 2006 Journal Articles Dephasing representation of quantum fidelity for general pure and mixed states J. Vanicek
Physical Review E . 2006. Vol. 73 , num. 4-2 , p. 046204/1-046204/12. DOI : 10.1103/PhysRevE.73.046204. 2005 Journal Articles Conference Papers Path integral evaluation of the kinetic isotope effects based on the quantum instanton approximation J. Vanicek ; W. H. Miller
2005. The 8th International Conference: Path Integrals from Quantum Information to Cosmology, Prague, Czech Republic, June 6-10, 2005. p. 1-11. 2004 Journal Articles Dephasing representation: Unified semiclassical framework for fidelity decay J. Vanicek
Los Alamos National Laboratory, Preprint Archive, Quantum Physics . 2004. num. arXiv:quant-ph/0410205v1 , p. 1-4. Dephasing representation: Employing the shadowing theorem to calculate quantum correlation functions J. Vanicek
Physical Review E . 2004. Vol. 70 , num. 5-2 , p. 055201/1-055201/4. DOI : 10.1103/PhysRevE.70.055201. 2003 Journal Articles Survival probability and local density of states for one-dimensional Hamiltonian systems J. Vanicek ; D. Cohen
Journal of Physics A: Mathematical and General . 2003. Vol. 36 , p. 9591-9608. DOI : 10.1088/0305-4470/36/36/310. Semiclassical evaluation of quantum fidelity J. Vanicek ; E. J. Heller
Physical Review E . 2003. Vol. 68 , num. 5-2 , p. 056208/1-056208/5. DOI : 10.1103/PhysRevE.68.056208. Uniform semiclassical wave function for coherent two- dimensional electron flow J. Vanicek ; E. J. Heller
Physical Review E . 2003. Vol. 67 , num. 1-2 , p. 016211/1-016211/8. DOI : 10.1103/PhysRevE.67.016211. 2001 Journal Articles Replacement manifolds: A method to uniformize semiclassical wave functions J. Vanicek ; E. J. Heller
Physical Review E . 2001. Vol. 64 , num. 2-2 , p. 026215/1-026215/11. DOI : 10.1103/PhysRevE.64.026215. 1996 Journal Articles Atomic beam splitter based on multiple adiabatic passage in the optical interference pattern M. Ol’shanii ; J. Vanicek ; M. Prentiss
Quantum and Semiclassical Optics . 1996. Vol. 8 , num. 3 , p. 655-663. DOI : 10.1088/1355-5111/8/3/025.