2026

Journal Articles

AlloPool is a deep learning framework that infers protein allostery from molecular dynamics simulations

M. Marfoglia; M. A. Pedraza-Joya; L. Guirardel; A. Chatzi Souleiman; P. Barth

PLOS Biology. 2026. Vol. 24, num. 9. DOI : 10.1371/journal.pbio.3004002.

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Reviews

Antibiotic-induced gut microbiome dysbiosis: risks and strategies for mitigation

K. Müller; J. Gillard; A. Typas; M. Knopp; C. V. Goemans

The EMBO Journal. 2026. DOI : 10.1038/s44318-026-00796-y.

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Working Papers

Bacteriostatic antibiotics drive bacterial death by reshaping competitive interactions

V. Rodriguez; J. Gillard; K. Mueller; K. Villion; Y. Alcivar et al.

2026

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2025

Journal Articles

Mining the gut microbiota for defluorination activity

C. Goemans

Trends in Biochemical Sciences. 2025. DOI : 10.1016/j.tibs.2025.07.003.

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2024

Journal Articles

Systematic mapping of antibiotic cross-resistance and collateral sensitivity with chemical genetics

N. Sakenova; E. Cacace; A. Orakov; F. Huber; V. Varik et al.

Nature Microbiology. 2024. Vol. 10, num. 1, p. 202 – 216. DOI : 10.1038/s41564-024-01857-w.

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Bactericidal effect of tetracycline in E. coli strain ED1a may be associated with ribosome dysfunction

I. Khusainov; N. Romanov; C. Goemans; B. Turoňová; C. E. Zimmerli et al.

Nature Communications. 2024. Vol. 15, num. 1. DOI : 10.1038/s41467-024-49084-5.

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Working Papers

Systematic mapping of antibiotic cross-resistance and collateral sensitivity with chemical genetics

N. Sakenova; E. Cacace; A. Orakov; F. Huber; V. Varik et al.

2024

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2023

Journal Articles

A molecular device for the redox quality control of GroEL/ES substrates

E. Dupuy; S. E. Van der Verren; J. Lin; M. A. Wilson; A. V. Dachsbeck et al.

Cell. 2023. Vol. 186, num. 5, p. 1039 – 1049.e17. DOI : 10.1016/j.cell.2023.01.013.

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2021

Journal Articles

Unravelling the collateral damage of antibiotics on gut bacteria

L. Maier; C. V. Goemans; J. Wirbel; M. Kuhn; C. Eberl et al.

Nature. 2021. Vol. 599, num. 7883, p. 120 – 124. DOI : 10.1038/s41586-021-03986-2.

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2020

Journal Articles

The functional proteome landscape of Escherichia coli

A. Mateus; J. Hevler; J. Bobonis; N. Kurzawa; M. Shah et al.

Nature. 2020. Vol. 588, num. 7838, p. 473 – 478. DOI : 10.1038/s41586-020-3002-5.

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Reviews

How the assembly and protection of the bacterial cell envelope depend on cysteine residues

J-F. Collet; S-H. Cho; B. I. Iorga; C. V. Goemans

Journal of Biological Chemistry. 2020. Vol. 295, num. 34, p. 11984 – 11994. DOI : 10.1074/jbc.REV120.011201.

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2019

Reviews

Stress-induced chaperones: a first line of defense against the powerful oxidant hypochlorous acid

C. V. Goemans; J-F. Collet

F1000Research. 2019. Vol. 8, p. 1678. DOI : 10.12688/f1000research.19517.1.

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2018

Journal Articles

The Chaperone and Redox Properties of CnoX Chaperedoxins Are Tailored to the Proteostatic Needs of Bacterial Species

C. V. Goemans; F. Beaufay; I. S. Arts; R. Agrebi; D. Vertommen et al.

mBio. 2018. Vol. 9, num. 6. DOI : 10.1128/mBio.01541-18.

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CnoX Is a Chaperedoxin: A Holdase that Protects Its Substrates from Irreversible Oxidation

C. V. Goemans; D. Vertommen; R. Agrebi; J-F. Collet

Molecular Cell. 2018. Vol. 70, num. 4, p. 614 – 627.e7. DOI : 10.1016/j.molcel.2018.04.002.

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An essential thioredoxin is involved in the control of the cell cycle in the bacterium Caulobacter crescentus

C. V. Goemans; F. Beaufay; K. Wahni; I. Van Molle; J. Messens et al.

Journal of Biological Chemistry. 2018. Vol. 293, num. 10, p. 3839 – 3848. DOI : 10.1074/jbc.RA117.001042.

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2014

Journal Articles

A New Role for Escherichia coli DsbC Protein in Protection against Oxidative Stress

K. Denoncin; D. Vertommen; I. S. Arts; C. V. Goemans; S. Rahuel-Clermont et al.

Journal of Biological Chemistry. 2014. Vol. 289, num. 18, p. 12356 – 12364. DOI : 10.1074/jbc.M114.554055.

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Reviews

Folding mechanisms of periplasmic proteins

C. Goemans; K. Denoncin; J-F. Collet

Biochimica et Biophysica Acta (BBA) – Molecular Cell Research. 2014. Vol. 1843, num. 8, p. 1517 – 1528. DOI : 10.1016/j.bbamcr.2013.10.014.

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