Recent Publications

2026

Multi-scale modeling of human tissues from spatial transcriptomics with TERRA

S. Birk; M. V. Sanian; A. Vahidi; S. Ogden; D. J. Jafree et al. 

2026

Prognostic RNA-splicing archetypes in breast cancer identified by extended pre-training of histopathology foundation models

L. Fournier; G. Haefliger; A. Vernhes; V. Jung; L. Loye et al. 

Nature Communications. 2026. DOI : 10.1038/s41467-026-75217-z.

Future cardiovascular events prediction from invasive coronary angiography: A graph representation learning perspective

X. Sun; T. Belmpas; O. Senouf; E. Abbé; P. Frossard et al. 

Medical image analysis. 2026. Vol. 112. DOI : 10.1016/j.media.2026.104079.

Topology-aware reconstruction of cellular state landscapes from microscopy using self-supervised learning

E. Messori; D. M. Taha; L. Fournier; A. Foix Romero; V. Uhlmann et al. 

2026

ODySSeI: An Open-Source End-to-End Framework for Automated Detection, Segmentation, and Severity Estimation of Lesions in Invasive Coronary Angiography Images

A. Choudhary; X. Sun; T. Mahendiran; O. Y. Senouf; D. Auberson et al. 

2026

Response: Machine Learning Should Enrich, Not Replace, Human Deliberation in End-of-Life Decisions

G. Starke; L. Schopp; C. Meier; J. Baffou; D. Thanou et al. 

NEJM AI. 2026. Vol. 3, num. 2. DOI : 10.1056/aip2501334.

Graph-Dictionary Signal Model for Sparse Representation of Multivariate Data

W. Cappelletti; P. Frossard 

IEEE Transactions on Signal and Information Processing over Networks. 2026.  p. 1 – 12. DOI : 10.1109/tsipn.2026.3653623.

Learning Many Tasks via Weight-Space Geometry

N. Dimitriadis / P. Frossard; F. Fleuret (Dir.)  

Lausanne, EPFL, 2026. 

Lane-Changing Maneuver Prediction With Urban Arterial Traffic Data From Drones

S. Kim; P. Frossard; N. Geroliminis 

IEEE Transactions on Intelligent Transportation Systems. 2026.  p. 1 – 15. DOI : 10.1109/tits.2026.3696643.

Semantic Document Derendering: SVG Reconstruction via Vision-Language Modeling

A. Hazimeh; K. Wang; M. Collier; G. Baechler; E. Kokiopoulou et al. 

2026. 40th AAAI Conference on Artificial Intelligence, Singapore, Singapore, 2026-01-20 – 2026-01-27. p. 4636 – 4644. DOI : 10.1609/aaai.v40i6.42464.

Graph Signal Separation With Learnable Spectral Filters

K. F. Niresi; D. Thanou; O. Fink 

IEEE Signal Processing Letters. 2026. Vol. 33, p. 2320 – 2324. DOI : 10.1109/lsp.2026.3705721.

Revisiting Automatic Data Curation for Vision Foundation Models in Digital Pathology

B. Chen; C. Vincent-Cuaz; L. A. Schoenpflug; M. Madeira; L. Fournier et al. 

2026. 28th International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI 2025), Daejeon (Republic of Korea), 2025-09-23 – 2025-09-27. p. 554 – 564. DOI : 10.1007/978-3-032-04978-0_53.

2025

Continuous Simplicial Neural Networks

A. Einizade; D. Thanou; F. Malliaros; J. H. Giraldo 

2025. 39th Conference on Neural Information Processing Systems, San Diego, USA, 2025-12-02 – 2025-12-07. p. 66221 – 66249. DOI : 10.52202/085713-1990.

A Fast Volumetric Capture and Reconstruction Pipeline for Dynamic Point Clouds and Gaussian Splats

A. Charisoudis; S. Croci; K. Y. Lam; P. Frossard; A. Smolic 

2025. 22nd ACM SIGGRAPH European Conference on Visual Media Production, London, UK, 2025-12-03 – 2025-12-04. DOI : 10.1145/3756863.3769713.

MEMOIR: Lifelong Model Editing with Minimal Overwrite and Informed Retention for LLMs

K. Wang; Y. QIN; N. Dimitriadis; A. Favero; P. Frossard 

2025. 39th Conference on Neural Information Processing Systems, San Diego, USA, 2025-12-02 – 2025-12-07. p. 99029 – 99056. DOI : 10.52202/085713-2982.

Flow based approach for Dynamic Temporal Causal models with non-Gaussian or Heteroscedastic Noises

A. Rahmani; P. Frossard 

2025. 39th Conference on Neural Information Processing Systems, San Diego, USA, 2025-12-02 – 2025-12-07. p. 9208 – 9257. DOI : 10.52202/085713-0283.

Inductive Domain Transfer In Misspecified Simulation-Based Inference

O. Y. Senouf; A. Wehenkel; C. Vincent-Cuaz; E. Abbé; P. Frossard 

2025. 39th Conference on Neural Information Processing Systems, San Diego, USA, 2025-12-02 – 2025-12-07. p. 101476 – 101498. DOI : 10.52202/085713-3058.

Physics-informed self-supervised learning for predictive modeling of coronary artery digital twins

X. Sun; T. Mahendiran; O. Y. Senouf; D. Auberson; B. De Bruyne et al. 

2025

AI-Driven multi-view learning from CCTA for myocardial infarction diagnosis

J. Gwizdała; A. Salihu; O. Senouf; D. Meier; D. C. Rotzinger et al. 

The International Journal of Cardiovascular Imaging. 2025. DOI : 10.1007/s10554-025-03523-6.

Machine Learning–Based Patient Preference Prediction: A Proof of Concept

G. Starke; L. Schopp; C. Meier; J. Baffou; D. Thanou et al. 

NEJM AI. 2025. DOI : 10.1056/aioa2500265.

CM-UNet: A Self-Supervised Learning-Based Model for Coronary Artery Segmentation in X-Ray Angiography

C. Challier; X. Sun; T. Mahendiran; O. Y. Senouf; B. De Bruyne et al. 

2025. 2025 47th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC), Copenhagen, Denmark, 2025-07-14 – 2025-07-18. p. 1 – 7. DOI : 10.1109/embc58623.2025.11253755.

Physics-informed model of epileptic seizure dynamics

M. Ruch; A. Venkitaraman; O. Y. Senouf; P. Frossard 

2025. 2025 47th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC), Copenhagen, Denmark, 2025-07-14 – 2025-07-18. p. 1 – 7. DOI : 10.1109/embc58623.2025.11254042.

Decoding the Interactions and Functions of Non-coding Rna with Artificial Intelligence

V. Jung; C. Vincent-Cuaz; C. Tumescheit; L. Fournier; M. Darsinou et al. 

NATURE REVIEWS MOLECULAR CELL BIOLOGY. 2025. DOI : 10.1038/s41580-025-00857-w.

Revealing Brain and Spinal Cord Functional Networks by Block-Structured Graph Laplacian Mixture Models

I. Ricchi; W. Cappelletti; E. Sareen; P. Frossard; D. Van De Ville 

2025. 2025 IEEE 22nd International Symposium on Biomedical Imaging (ISBI), Houston, TX, USA, 2025-04-14 – 2025-04-17. p. 1 – 5. DOI : 10.1109/isbi60581.2025.10981072.

OSLO-IC: On-the-Sphere Learned Omnidirectional Image Compression with Attention Modules and Spatial Context

P. Wawerek-López; N. M. Bidgoli; P. Frossard; A. Kaup; T. Maugey 

2025. ICASSP 2025 – 2025 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP), Hyderabad, India, 2025-04-06 – 2025-04-11. p. 1 – 5. DOI : 10.1109/icassp49660.2025.10889131.

Extended pre-training of histopathology foundation models uncovers co-existing breast cancer archetypes characterized by RNA splicing or TGF-β dysregulation

L. M. Fournier; G. Haefliger; A. E. Vernhes; V. Jung; I. Letovanec et al. 

2025

GraphTeacher: Transductive Fine-Tuning of Encoders through Graph Neural Networks

E. Koç; A. C. Aras; T. Alikasifoglu; A. Koç 

IEEE Transactions on Artificial Intelligence. 2025.  p. 1 – 15. DOI : 10.1109/TAI.2025.3627514.

Efficient Adaptation for Speech Technology

H. Chen / P. Frossard; P. N. Garner (Dir.)  

Lausanne, EPFL, 2025. 

Sequential Representation Learning via Static-Dynamic Conditional Disentanglement

M. C. Simon; P. Frossard; C. D. Vleeschouwer 

2025. 18th European Conference on Computer Vision, Milan, Italy, 2024-09-29 – 2024-10-04. p. 110 – 126. DOI : 10.1007/978-3-031-73226-3_7.

Informed machine learning models for advancing cardiac disease prognosis

O. Y. Senouf / P. Frossard; E. Abbé (Dir.)  

Lausanne, EPFL, 2025. 

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