Google Scholar profile of Anne-Florence Bitbol
2024
Evolution of cooperation in deme-structured populations on graphs
Physical Review E
2024-02-15
Vol. 109 , num. 2, p. 024307.DOI : 10.1103/PhysRevE.109.024307
Universal Casimir attraction between filaments at the cell scale
New Journal Of Physics
2024-01-01
Vol. 26 , num. 1, p. 013009.DOI : 10.1088/1367-2630/ad1846
2023
Frequent asymmetric migrations suppress natural selection in spatially structured populations
Pnas Nexus
2023-11-01
Vol. 2 , num. 11, p. pgad392.DOI : 10.1093/pnasnexus/pgad392
Interactions between pili affect the outcome of bacterial competition driven by the type VI secretion system
bioRxiv
2023
p. 61.DOI : 10.1101/2023.10.25.564063
Combining phylogeny and coevolution improves the inference of interaction partners among paralogous proteins
Plos Computational Biology
2023-03-01
Vol. 19 , num. 3, p. e1011010.DOI : 10.1371/journal.pcbi.1011010
Impact of population size on early adaptation in rugged fitness landscapes
Philosophical Transactions Of The Royal Society B-Biological Sciences
2023-05-22
Vol. 378 , num. 1877, p. 20220045.DOI : 10.1098/rstb.2022.0045
Generative power of a protein language model trained on multiple sequence alignments
Elife
2023-02-03
Vol. 12 , p. e79854.DOI : 10.7554/eLife.79854
Impact of phylogeny on structural contact inference from protein sequence data
Journal Of The Royal Society Interface
2023-02-08
Vol. 20 , num. 199, p. 20220707.DOI : 10.1098/rsif.2022.0707
2022
Correlations from structure and phylogeny combine constructively in the inference of protein partners from sequences
Plos Computational Biology
2022-05-01
Vol. 18 , num. 5, p. e1010147.DOI : 10.1371/journal.pcbi.1010147
Protein language models trained on multiple sequence alignments learn phylogenetic relationships
Nature Communications
2022-10-22
Vol. 13 , num. 1, p. 6298.DOI : 10.1038/s41467-022-34032-y
Extracting phylogenetic dimensions of coevolution reveals hidden functional signals
Scientific Reports
2022-01-17
Vol. 12 , num. 1, p. 820.DOI : 10.1038/s41598-021-04260-1
Hydrodynamic flow and concentration gradients in the gut enhance neutral bacterial diversity
Proceedings of the National Academy of Sciences
2022-01-04
Vol. 119 , num. 1, p. e2108671119.DOI : 10.1073/pnas.2108671119
2021
Toward a Universal Model for Spatially Structured Populations
Physical Review Letters
2021-11-19
Vol. 127 , num. 21, p. 218102.DOI : 10.1103/PhysRevLett.127.218102
Evolutionary history expands the range of signaling interactions in hybrid multikinase networks
Scientific Reports
2021-06-03
Vol. 11 , num. 1, p. 11763.DOI : 10.1038/s41598-021-91260-w
2020
A convolutional neural network segments yeast microscopy images with high accuracy
Nature Communications
2020-11-12
Vol. 11 , num. 1, p. 5723.DOI : 10.1038/s41467-020-19557-4
Adapt or Perish: Evolutionary Rescue in a Gradually Deteriorating Environment
Genetics
2020-08-27
Vol. 216 , num. 2, p. 573-583.DOI : 10.1534/genetics.120.303624
Mitochondrial cristae modeled as an out-of-equilibrium membrane driven by a proton field
Physical Review E
2020-08-05
Vol. 102 , num. 2, p. 022401.DOI : 10.1103/PhysRevE.102.022401
Resist or perish: Fate of a microbial population subjected to a periodic presence of antimicrobial
PLOS Computational Biology
2020-04-10
Vol. 16 , num. 4, p. e1007798.DOI : 10.1371/journal.pcbi.1007798
Statistical physics of interacting proteins: Impact of dataset size and quality assessed in synthetic sequences
Physical Review E
2020-03-20
Vol. 101 , num. 3, p. 032413.DOI : 10.1103/PhysRevE.101.032413
Spatiotemporal pattern formation in E. coli biofilms explained by a simple physical energy balance
Soft Matter
2020
Vol. 16 , num. 2, p. 494-504.DOI : 10.1039/C9SM01375J
2019
Revealing evolutionary constraints on proteins through sequence analysis
PLOS Computational Biology
2019-04-24
Vol. 15 , num. 4, p. e1007010.DOI : 10.1371/journal.pcbi.1007010
Antibody‐mediated crosslinking of gut bacteria hinders the spread of antibiotic resistance
Evolution
2019-06
Vol. 73 , num. 6, p. 1077-1088.DOI : 10.1111/evo.13730
Phylogenetic correlations can suffice to infer protein partners from sequences
PLOS Computational Biology
2019-10-14
Vol. 15 , num. 10, p. e1007179.DOI : 10.1371/journal.pcbi.1007179
2018
Quantifying the impact of a periodic presence of antimicrobial on resistance evolution in a homogeneous microbial population of fixed size
Journal of Theoretical Biology
2018-11
Vol. 457 , p. 190-198.DOI : 10.1016/j.jtbi.2018.08.040
pH sensing by lipids in membranes: The fundamentals of pH-driven migration, polarization and deformations of lipid bilayer assemblies
Biochimica et Biophysica Acta (BBA) – Biomembranes
2018-10
Vol. 1860 , num. 10, p. 2042-2063.DOI : 10.1016/j.bbamem.2018.02.026
Inferring interaction partners from protein sequences using mutual information
PLOS Computational Biology
2018-11-13
Vol. 14 , num. 11, p. e1006401.DOI : 10.1371/journal.pcbi.1006401
Membrane-Mediated Interactions
Physics of Biological Membranes; Springer International Publishing, 2018. p. 311-350.ISBN : 978-3-030-00630-3
DOI : 10.1007/978-3-030-00630-3_13
2017
Bacterial biofilm under flow: First a physical struggle to stay, then a matter of breathing
PLOS ONE
2017-04-12
Vol. 12 , num. 4, p. e0175197.DOI : 10.1371/journal.pone.0175197
2016
Characterizing the Statistical Properties of Protein Surfaces
Biophysical Journal
2016
60th Annual Meeting of the Biophysical-Society, Los Angeles, CA, February 27-March 02, 2016.p. 535a-536a
DOI : 10.1016/j.bpj.2015.11.2868
Inferring interaction partners from protein sequences
Proceedings of the National Academy of Sciences
2016-10-25
Vol. 113 , num. 43, p. 12180-12185.DOI : 10.1073/pnas.1606762113
2015
Fundamental Constraints on the Abundances of Chemotaxis Proteins
Biophysical Journal
2015
59th Annual Meeting of the Biophysical-Society, Baltimore, MD, February 07-11, 2015.p. 365a
DOI : 10.1016/j.bpj.2014.11.2000
Direct Monolayer Packing Imbalance and Phospholipid Flip-Flop: Two Mechanisms of Local Bilayer Deformation. Application to Mitochondrial Cristae of Wild-Type and Cardiolipin-Deficient Mutant
Biophysical Journal
2015
59th Annual Meeting of the Biophysical-Society, Baltimore, MD, February 07-11, 2015.p. 2a
DOI : 10.1016/j.bpj.2014.11.024
Fundamental Constraints on the Abundances of Chemotaxis Proteins
Biophysical Journal
2015-03
Vol. 108 , num. 5, p. 1293-1305.DOI : 10.1016/j.bpj.2015.01.024
2014
Large-scale filament formation inhibits the activity of CTP synthetase
eLife
2014-07-16
Vol. 3 , p. e03638.DOI : 10.7554/eLife.03638
Quantifying the Role of Population Subdivision in Evolution on Rugged Fitness Landscapes
PLoS Computational Biology
2014-08-14
Vol. 10 , num. 8, p. e1003778.DOI : 10.1371/journal.pcbi.1003778
Interplay of Packing and Flip-flop in Local Bilayer Deformation. How Phosphatidylglycerol Could Rescue Mitochondrial Function in a Cardiolipin-deficient Yeast Mutant
Biophysical Journal
2014-08
Vol. 107 , num. 4, p. 879-890.DOI : 10.1016/j.bpj.2014.07.015
2013
Elasticity of Lipid Bilayer Membranes at the Nanoscale: The Need for New Terms
Biophysical Journal
2013
57th Annual Meeting of the Biophysical-Society, Philadelphia, PA, February 02-06, 2013.p. 244a
DOI : 10.1016/j.bpj.2012.11.1374
Pairwise summation approximation for Casimir potentials and its limitations
Physical Review B
2013
Vol. 87 , num. 4, p. 045413.DOI : 10.1103/PhysRevB.87.045413
Membrane properties revealed by spatiotemporal response to a local inhomogeneity
Biochimica et Biophysica Acta (BBA) – Biomembranes
2013
Vol. 1828 , num. 4, p. 1241-1249.DOI : 10.1016/j.bbamem.2012.11.024
2012
Fluctuations of the Casimir-like force between two inclusions in a biological membrane
Proceedings of the International School of Physics Enrico Fermi
2012
176th Course of the International School of Physics Enrico Fermi on Complex Materials in Physics and Biology, Varenna, ITALY, JUN 29-JUL 09, 2010.p. 387-391
DOI : 10.3254/978-1-61499-071-0-387
Lipid Membrane Deformation in Response to a Local pH Modification
Biophysical Journal
2012
56th Annual Meeting of the Biophysical-Society, San Diego, CA, February 25-29, 2012.p. 33a
DOI : 10.1016/j.bpj.2011.11.209
Lipid membrane deformation in response to a local pH modification: theory and experiments
Soft Matter
2012
Vol. 8 , num. 22, p. 6073.DOI : 10.1039/c2sm25519g
Bilayer Elasticity at the Nanoscale: The Need for New Terms
PLoS ONE
2012-11-08
Vol. 7 , num. 11, p. e48306.DOI : 10.1371/journal.pone.0048306
2011
Membrane stress tensor in the presence of lipid density and composition inhomogeneities
The European Physical Journal E
2011-05
Vol. 34 , num. 5, p. 53.DOI : 10.1140/epje/i2011-11053-4
Dynamical membrane curvature instability controlled by intermonolayer friction
Journal of Physics: Condensed Matter
2011-07-20
Vol. 23 , num. 28, p. 284102.DOI : 10.1088/0953-8984/23/28/284102
Forces exerted by a correlated fluid on embedded inclusions
Physical Review E
2011-06-08
Vol. 83 , num. 6, p. 061107.DOI : 10.1103/PhysRevE.83.061107
Universal amplitudes of the Casimir-like interactions between four types of rods in fluid membranes
EPL (Europhysics Letters)
2011-11-01
Vol. 96 , num. 4, p. 40013.DOI : 10.1209/0295-5075/96/40013
2010
Fluctuations of the Casimir-like force between two membrane inclusions
Physical Review E
2010-05-28
Vol. 81 , num. 5, p. 050903.DOI : 10.1103/PhysRevE.81.050903
2009
Scaling and dynamics of washboard roads
Physical Review E
2009-06-26
Vol. 79 , num. 6, p. 061308.DOI : 10.1103/PhysRevE.79.061308