SOFI packages

Multicolor SOFI imaging

MATLAB software package for multicolor SOFI imaging. More details are described in the paper: Spectral Cross-Cumulants for Multicolor Super-resolved SOFI Imaging (link)

Developed and tested in Matlab R2016b, under Windows 7 and Windows 10. No additional software installation is required.

Download the package

multicolor_sofi_v2.3.zip


Unzip the folder on your computer, make sure it is in your MATLAB path.
To launch the calculation run multicolor_sofi_main.m
Please make sure that test data are in the same folder together with the code and that  the multicolor_sofi_main.m is the MATLAB current folder.

All tests should pass, results and figures will be saved in an automatically created results folder. The analysis of the test data should have a runtime of approx. 2min on a standard desktop computer.
Expected results can be found in the folder “test_data_expected_results”
Configuration of the processing can be changed in config.m
For more details about the implementation, please see the README file.