Publications

Highlights

Morphology, physiology and synaptic connectivity of local interneurons in the mouse somatosensory thalamus
« Morphology, physiology and synaptic connectivity of local interneurons in the mouse somatosensory thalamus », Jane Simko and Henry Markram, The Journal of Physiology, November 2021

2025

Higher-order interactions in neuronal function: From genes to ionic currents in biophysical models

M. Reva; A. Arnaudon; M. Zbili; A. Makkeh; H. Markram et al. 

Proceedings of the National Academy of Sciences. 2025. Vol. 122, num. 40. DOI : 10.1073/pnas.2500048122.

N-glycosylation modulates the inactivation kinetics of the Kv3.4 ion channel

R. Ranjan; E. Logette; M. Herzog; V. Buchillier; E. Scantamburlo et al. 

iScience. 2025. Vol. 28, num. 9, p. 113409. DOI : 10.1016/j.isci.2025.113409.

Biophysical modeling of thalamic reticular nucleus subpopulations and their differential contribution to spindle dynamics

P. Litvak; N. D. Hartley; R. Kast; G. Feng; Z. Fu et al. 

iScience. 2025. Vol. 28, num. 9, p. 113393. DOI : 10.1016/j.isci.2025.113393.

Of mice and men: Dendritic architecture differentiates human from mouse neuronal networks

L. Kanari; Y. Shi; A. Arnaudon; N. Barros-Zulaica; R. Benavides-Piccione et al. 

iScience. 2025. Vol. 28, num. 7, p. 112928. DOI : 10.1016/j.isci.2025.112928.

A multiscale electro-metabolic model of a rat neocortical circuit reveals the impact of ageing on central cortical layers

S. Farina; A. Cattabiani; D. Mandge; P. Shichkova; J. B. Isbister et al. 

PLOS Computational Biology. 2025. Vol. 21, num. 5. DOI : 10.1371/journal.pcbi.1013070.

Seizure and redox rescue in a model of glucose transport deficiency

J. S. Coggan; P. Shichkova; H. Markram; D. Keller 

PLoS Computational Biology. 2025. Vol. 21, num. 4, p. e1012959. DOI : 10.1371/journal.pcbi.1012959.

Computational Generation of Long-range Axonal Morphologies

A. Berchet; R. Petkantchin; H. Markram; L. Kanari 

NEUROINFORMATICS. 2025. Vol. 23, num. 1. DOI : 10.1007/s12021-024-09696-0.

2024

Cell density quantification of high resolution Nissl images of the juvenile rat brain

J. Meystre; J. Jacquemier; O. Burri; C. Zsolnai; N. Frank et al. 

Frontiers In Neuroanatomy. 2024. Vol. 18, p. 1463632. DOI : 10.3389/fnana.2024.1463632.

Nissl_3, Raw images for Machine learning for histological annotation and quantification of cortical layers.

J. Meystre 

2024.

Nissl_2, Raw images for Machine learning for histological annotation and quantification of cortical layers.

J. Meystre 

2024.

Nissl_5, Raw images for Machine learning for histological annotation and quantification of cortical layers

J. Meystre 

2024.

Nissl_4, Raw images for Machine learning for histological annotation and quantification of cortical layers.

J. Meystre 

2024.

Fear learning induces synaptic potentiation between engram neurons in the rat lateral amygdala

M. Abatis; R. Perin; R. Niu; E. van den Burg; C. Hegoburu et al. 

Nature Neuroscience. 2024. DOI : 10.1038/s41593-024-01676-6.

Nissl_1, Raw images for Machine learning for histological annotation and quantification of cortical layers

J. Meystre 

2024.

Supplementary files for Machine learning for histological annotation and quantification of cortical layers

J. Meystre; O. Burri 

2024.

Nissl_6, Raw images for Machine learning for histological annotation and quantification of cortical layers

J. Meystre 

2024.

2023

Transcriptional maintenance of cortical somatostatin interneuron subtype identity during migration

H. Munguba; K. Nikouei; H. Hochgerner; P. Oberst; A. Kouznetsova et al. 

Neuron. 2023. Vol. 111, num. 22. DOI : 10.1016/j.neuron.2023.07.018.

Neuronal growth on high-aspect-ratio diamond nanopillar arrays for biosensing applications

E. Losero; S. Jagannath; M. Pezzoli; V. Goblot; H. Babashah et al. 

Scientific Reports. 2023. Vol. 13, num. 1. DOI : 10.1038/s41598-023-32235-x.

2022

A calcium-based plasticity model for predicting long-term potentiation and depression in the neocortex

G. Chindemi; M. Abdellah; O. Amsalem; R. Benavides-Piccione; V. Delattre et al. 

Nature Communications. 2022. Vol. 13, num. 1, p. 3038. DOI : 10.1038/s41467-022-30214-w.

2021

Homeostatic regulation of axonal Kv1.1 channels accounts for both synaptic and intrinsic modifications in the hippocampal CA3 circuit

M. Zbili; S. Rama; M-J. Benitez; L. Fronzaroli-Molinieres; A. Bialowas et al. 

Proceedings Of The National Academy Of Sciences Of The United States Of America (PNAS). 2021. Vol. 118, num. 47, p. e2110601118. DOI : 10.1073/pnas.2110601118j1of12.