Publications

An interactive 3D atlas of gene expression in the mouse brain

H. Carey; S. Piluso; I. Bjerke; X. Gui; S. Yates et al.

2026

Modeling and simulation of neocortical micro- and mesocircuitry (Part II, Physiology and experimentation)

J. B. Isbister; A. Ecker; C. Pokorny; S. Bolaños-Puchet; D. Egas Santander et al.

eLife. 2026. Vol. 13. DOI : 10.7554/elife.99693.3.

Modeling and simulation of neocortical micro- and mesocircuitry (Part I, anatomy)

M. W. Reimann; S. Bolaños-Puchet; J-D. Courcol; D. Egas Santander; A. Arnaudon et al.

eLife. 2026. Vol. 13. DOI : 10.7554/elife.99688.3.

Higher-order interactions in neuronal function: From genes to ionic currents in biophysical models

M. Reva; A. Arnaudon; M. Zbili; A. Makkeh; H. Markram et al.

Proceedings of the National Academy of Sciences. 2025. Vol. 122, num. 40. DOI : 10.1073/pnas.2500048122.

N-glycosylation modulates the inactivation kinetics of the Kv3.4 ion channel

R. Ranjan; E. Logette; M. Herzog; V. Buchillier; E. Scantamburlo et al.

iScience. 2025. Vol. 28, num. 9, p. 113409. DOI : 10.1016/j.isci.2025.113409.

Biophysical modeling of thalamic reticular nucleus subpopulations and their differential contribution to spindle dynamics

P. Litvak; N. D. Hartley; R. Kast; G. Feng; Z. Fu et al.

iScience. 2025. Vol. 28, num. 9, p. 113393. DOI : 10.1016/j.isci.2025.113393.

Of mice and men: Dendritic architecture differentiates human from mouse neuronal networks

L. Kanari; Y. Shi; A. Arnaudon; N. Barros-Zulaica; R. Benavides-Piccione et al.

iScience. 2025. Vol. 28, num. 7, p. 112928. DOI : 10.1016/j.isci.2025.112928.

A multiscale electro-metabolic model of a rat neocortical circuit reveals the impact of ageing on central cortical layers

S. Farina; A. Cattabiani; D. Mandge; P. Shichkova; J. B. Isbister et al.

PLOS Computational Biology. 2025. Vol. 21, num. 5. DOI : 10.1371/journal.pcbi.1013070.

Seizure and redox rescue in a model of glucose transport deficiency

J. S. Coggan; P. Shichkova; H. Markram; D. Keller

PLoS Computational Biology. 2025. Vol. 21, num. 4, p. e1012959. DOI : 10.1371/journal.pcbi.1012959.

Breakdown and repair of metabolism in the aging brain

P. Shichkova; J. S. Coggan; L. Kanari; E. Boci; C. Favreau et al.

Frontiers in Science. 2025. Vol. 3. DOI : 10.3389/fsci.2025.1441297.

Computational Generation of Long-range Axonal Morphologies

A. Berchet; R. Petkantchin; H. Markram; L. Kanari

NEUROINFORMATICS. 2025. Vol. 23, num. 1. DOI : 10.1007/s12021-024-09696-0.

Cell density quantification of high resolution Nissl images of the juvenile rat brain

J. Meystre; J. Jacquemier; O. Burri; C. Zsolnai; N. Frank et al.

Frontiers In Neuroanatomy. 2024. Vol. 18, p. 1463632. DOI : 10.3389/fnana.2024.1463632.

Nissl_4, Raw images for Machine learning for histological annotation and quantification of cortical layers.

2024.

Nissl_3, Raw images for Machine learning for histological annotation and quantification of cortical layers.

2024.

Nissl_5, Raw images for Machine learning for histological annotation and quantification of cortical layers

2024.

Nissl_2, Raw images for Machine learning for histological annotation and quantification of cortical layers.

2024.

Fear learning induces synaptic potentiation between engram neurons in the rat lateral amygdala

M. Abatis; R. Perin; R. Niu; E. van den Burg; C. Hegoburu et al.

Nature Neuroscience. 2024. DOI : 10.1038/s41593-024-01676-6.

Nissl_1, Raw images for Machine learning for histological annotation and quantification of cortical layers

2024.

Supplementary files for Machine learning for histological annotation and quantification of cortical layers

J. Meystre; O. Burri

2024.