Publications

This is a list of publications related to imaging (from [email protected]). In development.

Spatially-Variant CNN-Based Point Spread Function Estimation for Blind Deconvolution and Depth Estimation in Optical Microscopy

A. Shajkofci; M. Liebling 

Ieee Transactions On Image Processing. 2020-01-01. Vol. 29, p. 5848-5861. DOI : 10.1109/TIP.2020.2986880.

Centriole foci persist in starfish oocytes despite Polo-like kinase 1 inactivation or loss of microtubule nucleation activity

M. Pierron; N. Kalbfuss; J. Borrego-Pinto; P. Lenart; P. Gonczy 

Molecular Biology Of The Cell. 2020-04-14. Vol. 31, num. 9, p. 873-880. DOI : 10.1091/mbc.E19-06-0346.

An objective comparison of detection and segmentation algorithms for artefacts in clinical endoscopy

S. Ali; F. Zhou; B. Braden; A. Bailey; S. Yang et al. 

Scientific Reports. 2020-02-17. Vol. 10, num. 1, p. 2748. DOI : 10.1038/s41598-020-59413-5.

Neutron Diffraction and Diffraction Contrast Imaging for Mapping the TRIP Effect under Load Path Change

E. Polatidis; M. Morgano; F. Malamud; M. Bacak; T. Panzner et al. 

Materials. 2020-03-02. Vol. 13, num. 6. DOI : 10.3390/ma13061450.

Convergent beam electron diffraction of multilayer Van der Waals structures

T. Latychevskaia; C. R. Woods; Y. B. Wang; M. Holwill; E. Prestat et al. 

Ultramicroscopy. 2020-05-01. Vol. 212, p. UNSP 112976. DOI : 10.1016/j.ultramic.2020.112976.

A VTA to Basal Amygdala Dopamine Projection Contributes to Signal Salient Somatosensory Events during Fear Learning

W. Tang; O. Kochubey; M. Kintscher; R. Schneggenburger 

The Journal of Neuroscience. 2020-05-13. Vol. 40, num. 20, p. 3969-3980. DOI : 10.1523/JNEUROSCI.1796-19.2020.

Substrate-Selective Morphology of Cesium Iodide Clusters on Graphene

N. Vats; Y. Wang; S. Sen; S. Szilagyi; H. Ochner et al. 

Acs Nano. 2020-04-28. Vol. 14, num. 4, p. 4626-4635. DOI : 10.1021/acsnano.9b10053.

Metabolic and perfusion responses to acute hypoglycemia in the rat cortex: A non-invasive magnetic resonance approach

H. Lei; R. Gruetter 

Journal Of Neurochemistry. 2020-05-05. DOI : 10.1111/jnc.15028.

Megapixel time-gated SPAD image sensor for 2D and 3D imaging applications

K. Morimoto; A. Ardelean; M-L. Wu; A. C. Ulku; I. M. Antolovic et al. 

Optica. 2020-04-20. Vol. 7, num. 4, p. 346-354. DOI : 10.1364/OPTICA.386574.

Microfluidic-based linear-optics label-free imager

O. Wagner; E. Edri; P. Hadikahani; H. Shpaisman; Z. Zalevsky et al. 

Lab On A Chip. 2020-04-07. Vol. 20, num. 7, p. 1259-1266. DOI : 10.1039/d0lc00036a.

Tracing in 2D to reduce the annotation effort for 3D deep delineation of linear structures

M. Kozinski; A. Mosinska; M. Salzmann; P. Fua 

Medical Image Analysis. 2020-02-01. Vol. 60, p. 101590. DOI : 10.1016/j.media.2019.101590.

Light pattern generation with hybrid refractive microoptics under Gaussian beam illumination

M. Yousefi; T. Scharf; M. Rossi 

Osa Continuum. 2020-04-15. Vol. 3, num. 4, p. 781-797. DOI : 10.1364/OSAC.386517.

In vivo detection of d-amino acid oxidase with hyperpolarized d-[1-C-13]alanine

A. Radaelli; R. Gruetter; H. A. I. Yoshihara 

Nmr In Biomedicine. 2020-04-23.  p. e4303. DOI : 10.1002/nbm.4303.

Formation and Collision of Multistability-Enabled Composite Dissipative Kerr Solitons

W. Weng; R. Bouchand; T. J. Kippenberg 

Physical Review X. 2020-04-23. Vol. 10, num. 2, p. 021017. DOI : 10.1103/PhysRevX.10.021017.

The role of the subgenual anterior cingulate cortex in dorsomedial prefrontal-amygdala neural circuitry during positive-social emotion regulation

F. Scharnowski; A. A. Nicholson; S. Pichon; M. J. Rosa; G. Rey et al. 

Human Brain Mapping. 2020-04-20. DOI : 10.1002/hbm.25001.

The Clustering of mApoE Anti-Amyloidogenic Peptide on Nanoparticle Surface Does Not Alter Its Performance in Controlling Beta-Amyloid Aggregation

R. Corti; A. Cox; V. Cassina; L. Nardo; D. Salerno et al. 

International Journal Of Molecular Sciences. 2020-02-01. Vol. 21, num. 3, p. 1066. DOI : 10.3390/ijms21031066.

Acoustic Supercoupling in a Zero-Compressibility Waveguide

H. Esfahlani; M. S. Byrne; M. McDermott; A. Alu 

Research. 2019-01-01. Vol. 2019, p. 2457870. DOI : 10.34133/2019/2457870.

Deconvolution of Sustained Neural Activity From Large-Scale Calcium Imaging Data

Y. Farouj; F. I. Karahanoglu; D. Van De Ville 

Ieee Transactions On Medical Imaging. 2020-04-01. Vol. 39, num. 4, p. 1094-1103. DOI : 10.1109/TMI.2019.2942765.

Time-resolved effective connectivity in task fMRI: Psychophysiological interactions of Co-Activation patterns

L. G. A. Freitas; T. A. W. Bolton; B. E. Krikler; D. Jochaut; A-L. Giraud et al. 

Neuroimage. 2020-05-15. Vol. 212, p. 116635. DOI : 10.1016/j.neuroimage.2020.116635.

Structural mediation of human brain activity revealed by white-matter interpolation of fMRI

A. Tarun; H. Behjat; T. Bolton; D. Abramian; D. Van De Ville 

Neuroimage. 2020-06-01. Vol. 213, p. 116718. DOI : 10.1016/j.neuroimage.2020.116718.

Multimodal imaging combining time-domain near-infrared optical tomography and continuous-wave fluorescence molecular tomography

W. Ren; J. Jiang; A. D. C. Mata; A. Kalyanov; J. Ripoll et al. 

Optics Express. 2020-03-30. Vol. 28, num. 7, p. 9860-9874. DOI : 10.1364/OE.385392.

Automated phenotyping of Caenorhabditis elegans embryos with a high-throughput-screening microfluidic platform

H. B. Atakan; T. Alkanat; M. Cornaglia; R. Trouillon; M. A. M. Gijs 

Microsystems & Nanoengineering. 2020-04-06. Vol. 6, num. 1. DOI : 10.1038/s41378-020-0132-8.

A point vortex transportation model for yawed wind turbine wakes

H. Zong; F. Porte-Agel 

Journal Of Fluid Mechanics. 2020-05-10. Vol. 890, p. A8. DOI : 10.1017/jfm.2020.123.

Context effects on probability estimation

W-H. Lin; J. L. Gardner; S-W. Wu 

Plos Biology. 2020-03-01. Vol. 18, num. 3. DOI : 10.1371/journal.pbio.3000634.

Tracking the cargo of extracellular symbionts into host tissues with correlated electron microscopy and nanoscale secondary ion mass spectrometry imaging

S. K. Cohen; M-S. Aschtgen; J. B. Lynch; S. Koehler; F. Chen et al. 

Cellular Microbiology. 2020-04-01. Vol. 22, num. 4, p. e13177. DOI : 10.1111/cmi.13177.

TbCAPs: A toolbox for co-activation pattern analysis

T. A. W. Bolton; C. Tuleasca; D. Wotruba; G. Rey; H. Dhanis et al. 

Neuroimage. 2020-05-01. Vol. 211, p. 116621. DOI : 10.1016/j.neuroimage.2020.116621.

Transscleral optical phase imaging of the human retina

T. Laforest; M. Kuenzi; L. Kowalczuk; D. Carpentras; F. Behar-Cohen et al. 

Nature Photonics. 2020-03-23. DOI : 10.1038/s41566-020-0608-y.

Whole-body somatotopic maps in the cerebellum revealed with 7T fMRI

Y. Boillat; P-L. Bazin; W. van der Zwaag 

Neuroimage. 2020-05-01. Vol. 211, p. 116624. DOI : 10.1016/j.neuroimage.2020.116624.

Unraveling the complexity of amyloid polymorphism using gold nanoparticles and cryo-EM

U. Cendrowska; P. J. Silva; N. Ait-Bouziad; M. Mueller; Z. P. Guven et al. 

Proceedings Of The National Academy Of Sciences Of The United States Of America. 2020-03-24. Vol. 117, num. 12, p. 6866-6874. DOI : 10.1073/pnas.1916176117.

Disentangling the origins of confidence in speeded perceptual judgments through multimodal imaging

M. Pereira; N. Faivre; I. Iturrate; M. Wirthlin; L. Serafini et al. 

Proceedings of the National Academy of Sciences. 2020-04-01.  p. 201918335. DOI : 10.1073/pnas.1918335117.

Scratching the Surface: Bacterial Cell Envelopes at the Nanoscale

A. Viljoen; S. J. Foster; G. Fantner; J. K. Hobbs; Y. F. Dufrene 

Mbio. 2020-01-01. Vol. 11, num. 1, p. e03020-19. DOI : 10.1128/mBio.03020-19.

Micrometer-resolution X-ray tomographic full-volume reconstruction of an intact post-mortem juvenile rat lung

E. Borisova; G. Lovric; A. Miettinen; L. Fardin; S. Bayat et al. 

Histochemistry And Cell Biology. 2020-03-18. DOI : 10.1007/s00418-020-01868-8.

Longitudinal neural and vascular structural dynamics produced by chronic microelectrode implantation

C. G. Welle; Y-R. Gao; M. Ye; A. Lozzi; A. Boretsky et al. 

Biomaterials. 2020-04-01. Vol. 238, p. 119831. DOI : 10.1016/j.biomaterials.2020.119831.

Evaluating the potential of hyperpolarised [1-13C] L-lactate as a neuroprotectant metabolic biosensor for stroke

J-N. Hyacinthe; L. Buscemi; T. P. Lê; M. Lepore; L. Hirt et al. 

Scientific Reports. 2020. Vol. 10, num. 1, p. 5507. DOI : 10.1038/s41598-020-62319-x.

Using connectivity-based real-time fMRI neurofeedback to modulate attentional and resting state networks in people with high trait anxiety

E. Morgenroth; F. Saviola; J. Gilleen; B. Allen; M. Luhrs et al. 

Neuroimage-Clinical. 2020-01-01. Vol. 25, p. 102191. DOI : 10.1016/j.nicl.2020.102191.

Assessing the Kinetics and Pore‐Scale Characteristics of Biological Calcium Carbonate Precipitation in Porous Media using a Microfluidic Chip Experiment

D. Kim; N. Mahabadi; J. Jang; L. A. van Paassen 

Water Resources Research. 2020-02-06. Vol. 56, num. 2. DOI : 10.1029/2019WR025420.

25th Anniversary of STED Microscopy and the 20th Anniversary of SIM: feature introduction

P. Kner; S. Manley; Y. Shechtman; S. Stallinga 

Biomedical Optics Express. 2020-03-01. Vol. 11, num. 3, p. 1707-1711. DOI : 10.1364/BOE.391490.

Nanoplasma-enabled picosecond switches for ultrafast electronics

M. Samizadeh Nikoo; A. Jafari; N. Perera; M. Zhu; G. Santoruvo et al. 

Nature. 2020-03-25. Vol. 579, num. 7800, p. 534-539. DOI : 10.1038/s41586-020-2118-y.

Agito ergo sum: Correlates of spatio-temporal motion characteristics during fMRI

T. A. W. Bolton; V. Kebets; E. Glerean; D. Zoeller; J. Li et al. 

Neuroimage. 2020-04-01. Vol. 209, p. 116433. DOI : 10.1016/j.neuroimage.2019.116433.

CVSnet: A machine learning approach for automated central vein sign assessment in multiple sclerosis

P. Maggi; M. J. Fartaria; J. Jorge; F. La Rosa; M. Absinta et al. 

Nmr In Biomedicine. 2020-03-03.  p. e4283. DOI : 10.1002/nbm.4283.

Comparison of autofluorescence and white-light bronchoscopies performed with the Evis Lucera Spectrum for the detection of bronchial cancers: a meta-analysis

S. Sun; Y. Yang; M. Chen; L. Wang; H. Pan et al. 

Translational Lung Cancer Research. 2020-02-01. Vol. 9, num. 1, p. 23-32. DOI : 10.21037/tlcr.2020.01.04.

Triple Network Model Dynamically Revisited: Lower Salience Network State Switching in Pre-psychosis

T. A. W. Bolton; D. Wotruba; R. Buechler; A. Theodoridou; L. Michels et al. 

Frontiers In Physiology. 2020-02-11. Vol. 11, p. 66. DOI : 10.3389/fphys.2020.00066.

Information Theoretic Characterization of Uncertainty Distinguishes Surprise From Accuracy Signals in the Brain

L. Loued-Khenissi; K. Preuschoff 

Frontiers in Artificial Intelligence. 2020-02-28. Vol. 3. DOI : 10.3389/frai.2020.00005.

Bio-optical properties and radiative energy budgets in fed and unfed scleractinian corals (Pocillopora sp.) during thermal bleaching

N. Lyndby; J. Holm; D. Wangpraseurt; C. Ferrier-Pagès; M. Kühl 

Marine Ecology Progress Series. 2019-10-24. Vol. 629, p. 1-17. DOI : 10.3354/meps13146.

Attosecond transient absorption spooktroscopy: a ghost imaging approach to ultrafast absorption spectroscopy

T. Driver; S. Li; E. G. Champenois; J. Duris; D. Ratner et al. 

Physical Chemistry Chemical Physics. 2020-02-07. Vol. 22, num. 5, p. 2704-2712. DOI : 10.1039/c9cp03951a.

Single-Photon, Time-Gated, Phasor-Based Fluorescence Lifetime Imaging through Highly Scattering Medium

R. Ankri; A. Basu; A. C. Ulku; C. Bruschini; E. Charbon et al. 

ACS Photonics. 2019-12-13. Vol. 7, num. 1, p. 68-79. DOI : 10.1021/acsphotonics.9b00874.

A method for fast automated assessment of the magnetic resonance parkinsonism index

M. Scheffle; B. Marechal; J. Boto; K-O. Loevblad; M. I. Vargas 

Neuroradiology. 2020-02-24. DOI : 10.1007/s00234-020-02380-5.

Imaging Catalysis: Operando Investigation of the CO2 Hydrogenation Reaction Dynamics by Means of Infrared Thermography

R. Mutschler; E. Moioli; K. Zhao; L. Lombardo; E. Oveisi et al. 

Acs Catalysis. 2020-02-07. Vol. 10, num. 3, p. 1721-1730. DOI : 10.1021/acscatal.9b04475.

Brainstem Correlates of a Cold Pressor Test Measured by Ultra-High Field fMRI

M. C. Hendriks-Balk; F. Megdiche; L. Pezzi; O. Reynaud; S. Da Costa et al. 

Frontiers In Neuroscience. 2020-01-31. Vol. 14, p. 39. DOI : 10.3389/fnins.2020.00039.

A momentum-conserving wake superposition method for wind farm power prediction

H. Zong; F. Porte-Agel 

Journal Of Fluid Mechanics. 2020-04-25. Vol. 889, p. A8. DOI : 10.1017/jfm.2020.77.

Bacterial biofilm under flow: First a physical struggle to stay, then a matter of breathing

P. Thomen; J. Robert; A. Monmeyran; A-F. Bitbol; C. Douarche et al. 

PLOS ONE. 2017-04-12. Vol. 12, num. 4, p. e0175197. DOI : 10.1371/journal.pone.0175197.

The instrument suite of the European Spallation Source

K. H. Andersen; D. N. Argyriou; A. J. Jackson; J. Houston; P. F. Henry et al. 

Nuclear Instruments & Methods In Physics Research Section A-Accelerators Spectrometers Detectors And Associated Equipment. 2020-03-21. Vol. 957, p. 163402. DOI : 10.1016/j.nima.2020.163402.

Tractostorm: The what, why, and how of tractography dissection reproducibility

F. Rheault; A. De Benedictis; A. Daducci; C. Maffei; C. M. W. Tax et al. 

Human Brain Mapping. 2020-01-10. DOI : 10.1002/hbm.24917.

Refinement for single-nanoparticle structure determination from low-quality single-shot coherent diffraction data

T. Nishiyama; A. Niozu; C. Bostedt; K. R. Ferguson; Y. Sato et al. 

Iucrj. 2020-01-01. Vol. 7, p. 10-17. DOI : 10.1107/S2052252519014222.

Defect Passivation via the Incorporation of Tetrapropylammonium Cation Leading to Stability Enhancement in Lead Halide Perovskite

A. Krishna; M. A. A. Kazemi; M. Sliwa; G. N. M. Reddy; L. Delevoye et al. 

Advanced Functional Materials. 2020-02-14.  p. 1909737. DOI : 10.1002/adfm.201909737.

Adaptive phase correction of diffusion-weighted images

M. Pizzolato; G. Gilbert; J-P. Thiran; M. Descoteaux; R. Deriche 

Neuroimage. 2020-02-01. Vol. 206, p. 116274. DOI : 10.1016/j.neuroimage.2019.116274.

SciFi detector and associated method for real-time determination of profile and output factor for small fields in stereotactic radiotherapy

P. Pittet; J. Esteves; J. -M. Galvan; G. -N. Lu; F. Blanc et al. 

Medical Physics. 2020-01-30. DOI : 10.1002/mp.14019.

Music enhances structural maturation of emotional processing neural pathways in very preterm infants

J. S. de Almeida; L. Lordier; B. Zollinger; N. Kunz; M. Bastiani et al. 

Neuroimage. 2020-02-15. Vol. 207, p. 116391. DOI : 10.1016/j.neuroimage.2019.116391.

Test-retest variability of brain morphometry analysis: an investigation of sequence and coil effects

S. Yan; T. Qian; B. Marechal; T. Kober; X. Zhang et al. 

Annals Of Translational Medicine. 2020-01-01. Vol. 8, num. 1, p. 12. DOI : 10.21037/atm.2019.11.149.

Dynamic spatiotemporal patterns of brain connectivity reorganize across development

J. Vohryzek; A. Griffa; E. Mullier; C. Friedrichs-Maeder; C. Sandini et al. 

Network Neuroscience. 2020-01-01. Vol. 4, num. 1, p. 115-133. DOI : 10.1162/netn_a_00111.

Improved susceptibility-weighted imaging for high contrast and resolution thalamic nuclei mapping at 7T

J. Jorge; F. Gretsch; E. Najdenovska; C. Tuleasca; M. Levivier et al. 

Magnetic Resonance In Medicine. 2020-02-12. DOI : 10.1002/mrm.28197.

Marker-Free Automatic Quantification of Drug-Treated Cardiomyocytes with Digital Holographic Imaging

K. Jaferzadeh; B. Rappaz; F. Kuttler; B. K. Kim; I. Moon et al. 

Acs Photonics. 2020-01-01. Vol. 7, num. 1, p. 105-113. DOI : 10.1021/acsphotonics.9b01152.

Contrast-Enhanced Ultrasound Quantification: From Kinetic Modeling To Machine Learning

S. Turco; P. Prinking; R. Wildeboer; M. Arditi; H. Wijkstra et al. 

Ultrasound In Medicine And Biology. 2020-03-01. Vol. 46, num. 3, p. 518-543. DOI : 10.1016/j.ultrasmedbio.2019.11.008.

Quantification in Musculoskeletal Imaging Using Computational Analysis and Machine Learning: Segmentation and Radiomics

M. B. Cuadra; P. Omoumi 

Seminars In Musculoskeletal Radiology. 2020-02-01. Vol. 24, num. 1, p. 50-64. DOI : 10.1055/s-0039-3400268.

Synchrotron-based phase-contrast micro-CT as a tool for understanding pulmonary vascular pathobiology and the 3-D microanatomy of alveolar capillary dysplasia

C. Norvik; C. K. Westoo; N. Peruzzi; G. Lovric; O. van der Have et al. 

American Journal Of Physiology-Lung Cellular And Molecular Physiology. 2020-01-01. Vol. 318, num. 1, p. L65-L75. DOI : 10.1152/ajplung.00103.2019.

High-speed multiplane structured illumination microscopy of living cells using an image-splitting prism

A. Descloux; M. Mueller; V. Navikas; A. Markwirth; R. Van den Eynde et al. 

Nanophotonics. 2020-01-01. Vol. 9, num. 1, p. 143-148. DOI : 10.1515/nanoph-2019-0346.

Single-Photon, Time-Gated, Phasor-Based Fluorescence Lifetime Imaging through Highly Scattering Medium

R. Ankri; A. Basu; A. C. Ulku; C. Bruschini; E. Charbon et al. 

Acs Photonics. 2020-01-01. Vol. 7, num. 1, p. 68-79. DOI : 10.1021/acsphotonics.9b00874.

The role of xanthophylls in the supramolecular organization of the photosynthetic complex LHCII in lipid membranes studied by high-resolution imaging and nanospectroscopy

J. Zhou; S. Sekatskii; R. Welc; G. Dietler; W. I. Gruszecki 

Biochimica Et Biophysica Acta-Bioenergetics. 2020-02-01. Vol. 1861, num. 2, p. 148117. DOI : 10.1016/j.bbabio.2019.148117.

Microstructured Biodegradable Fibers for Advanced Control Delivery

S. Shadman; Tung Nguyen-Dang; T. Das Gupta; A. G. Page; I. Richard et al. 

Advanced Functional Materials. 2020-02-14.  p. 1910283. DOI : 10.1002/adfm.201910283.

Brain Perfusion Measurements Using Multidelay Arterial Spin-Labeling Are Systematically Biased by the Number of Delays

M. van der Thiel; C. Rodriguez; P. Giannakopoulos; M. X. Burke; R. M. Lebel et al. 

American Journal Of Neuroradiology. 2018-08-01. Vol. 39, num. 8, p. 1432-1438. DOI : 10.3174/ajnr.A5717.

Imaging of mRNA in Live Cells Using Nucleic Acid-Templated Reduction of Azidorhodamine Probes

Z. Pianowski; K. Gorska; L. Oswald; C. Merten; N. Winssinger 

Journal of the American Chemical Society. 2009-04-20. Vol. 131, num. 18, p. 6492-6497. DOI : 10.1021/ja809656k.

Screening Europe 2010: an update about the latest technologies and applications in high-throughput screening

C. Merten 

Expert Review of Molecular Diagnostics. 2014-01-09. Vol. 10, num. 5, p. 559-563. DOI : 10.1586/erm.10.42.

The process of Lewy body formation, rather than simply α-synuclein fibrillization, is one of the major drivers of neurodegeneration

A-L. Mahul-Mellier; J. Burtscher; N. Maharjan; L. Weerens; M. Croisier et al. 

Proceedings of the National Academy of Sciences of United States of America. 2020-02-19.  p. 201913904. DOI : 10.1073/pnas.1913904117.

Performance assessment of the BTDF data compression based on wavelet transforms in daylighting simulation

Y. Wu; J. Kämpf; J. -L. Scartezzini 

Solar Energy. 2019. DOI : 10.1016/j.solener.2019.07.096.

Reconstruction of image sequences from ungated and scanning-aberrated laser scanning microscopy images of the beating heart

O. Mariani; A. Ernst; N. Mercader; M. Liebling 

IEEE Transactions on Compuational Imaging. 2019. DOI : 10.1109/TCI.2019.2948772.

Noninvasive rapid detection of metabolic adaptation in activated human T lymphocytes by hyperpolarized 13C magnetic resonance

E. Can; M. Mishkovsky; H. A. I. Yoshihara; N. Kunz; D-L. Couturier et al. 

Scientific Reports. 2020-01-13. Vol. 10, num. 1, p. 200. DOI : 10.1038/s41598-019-57026-1.

Soft compartmentalization: Combining droplet-based microfluidics with freely accessible cells

D. Eicher; N. Ramanathan; C. Merten 

Engineering in Life Sciences. 2015-03-05. Vol. 15, num. 3, p. 297-305. DOI : 10.1002/elsc.201400184.

A Versatile, Low-Cost, Multiway Microfluidic Sorter for Droplets, Cells, and Embryos

R. Utharala; Q. Tseng; E. E. M. Furlong; C. Merten 

Analytical Chemistry. 2018-04-24. Vol. 90, num. 10, p. 5982-5988. DOI : 10.1021/acs.analchem.7b04689.

Lewy pathology in Parkinson’s disease consists of crowded organelles and lipid membranes

S. H. Shahmoradian; A. J. Lewis; C. Genoud; J. Hench; T. E. Moors et al. 

Nature Neuroscience. 2019-06-24. Vol. 22, num. 7, p. 1099-1109. DOI : 10.1038/s41593-019-0423-2.

CTF Challenge: Result summary

R. Marabini; B. Carragher; S. Chen; J. Chen; A. Cheng et al. 

Journal of Structural Biology. 2015-06-01. Vol. 190, num. 3, p. 348-359. DOI : 10.1016/j.jsb.2015.04.003.

Milestones in electron crystallography

L. Renault; H-T. Chou; P-L. Chiu; R. M. Hill; X. Zeng et al. 

Journal of Computer-Aided Molecular Design. 2006-11-11. Vol. 20, num. 07.août, p. 519-527. DOI : 10.1007/s10822-006-9075-x.

Yersinia enterocolitica type III secretion injectisomes form regularly spaced clusters, which incorporate new machines upon activation

M. Kudryashev; A. Diepold; M. Amstutz; J. P. Armitage; H. Stahlberg et al. 

Molecular Microbiology. 2015-01-30. Vol. 95, num. 5, p. 875-884. DOI : 10.1111/mmi.12908.

Low-dose aberration corrected cryo-electron microscopy of organic specimens

J. E. Evans; C. Hetherington; A. Kirkland; L-Y. Chang; H. Stahlberg et al. 

Ultramicroscopy. 2008-11-01. Vol. 108, num. 12, p. 1636-1644. DOI : 10.1016/j.ultramic.2008.06.004.

High-resolution low-dose scanning transmission electron microscopy

J. P. Buban; Q. Ramasse; B. Gipson; N. D. Browning; H. Stahlberg 

Journal of Electron Microscopy. 2009-11-14. Vol. 59, num. 2, p. 103-112. DOI : 10.1093/jmicro/dfp052.

High resolution AFM topographs of the Escherichia coli water channel aquaporin Z

S. Scheuring; P. Ringler; M. Borgnia; H. Stahlberg; D. Muller et al. 

The EMBO Journal. 1999-09-15. Vol. 18, num. 18, p. 4981-4987. DOI : 10.1093/emboj/18.18.4981.

The application of graphene as a sample support in transmission electron microscopy

R. S. Pantelic; J. C. Meyer; U. Kaiser; H. Stahlberg 

Solid State Communications. 2012-08-01. Vol. 152, num. 15, p. 1375-1382. DOI : 10.1016/j.ssc.2012.04.038.

2dx_merge: Data management and merging for 2D crystal images

B. Gipson; X. Zeng; H. Stahlberg 

Journal of Structural Biology. 2007-12-01. Vol. 160, num. 3, p. 375-384. DOI : 10.1016/j.jsb.2007.09.011.

Assessing the benefits of focal pair cryo-electron tomography

M. Kudryashev; H. Stahlberg; D. Castano-Diez 

Journal of Structural Biology. 2012-05-01. Vol. 178, num. 2, p. 88-97. DOI : 10.1016/j.jsb.2011.10.004.

Charting and unzipping the surface layer of Corynebacterium glutamicum with the atomic force microscope

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Molecular Microbiology. 2002-05-07. Vol. 44, num. 3, p. 675-684. DOI : 10.1046/j.1365-2958.2002.02864.x.

3D reconstruction of two-dimensional crystals

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Archives of Biochemistry and Biophysics. 2015-09-01. Vol. 581, p. 68-77. DOI : 10.1016/j.abb.2015.06.006.

Progress in the analysis of membrane protein structure and function

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FEBS Letters. 2002-08-29. Vol. 529, num. 1, p. 65-72. DOI : 10.1016/S0014-5793(02)03290-8.

Proteoliposomes – a system to study membrane proteins under buffer gradients by cryo-EM

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Nanotechnology Reviews. 2017-01-01. Vol. 6, num. 1, p. 57-74. DOI : 10.1515/ntrev-2016-0081.

Total Sample Conditioning and Preparation of Nanoliter Volumes for Electron Microscopy

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ACS Nano. 2016-05-24. Vol. 10, num. 5, p. 4981-4988. DOI : 10.1021/acsnano.6b01328.

An optical and microPET assessment of thermally-sensitive liposome biodistribution in the Met-1 tumor model: Importance of formulation

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2dx_automator: Implementation of a semiautomatic high-throughput high-resolution cryo-electron crystallography pipeline

S. Scherer; J. Kowal; M. Chami; V. Dandey; M. Arheit et al. 

Journal of Structural Biology. 2014-05-01. Vol. 186, num. 2, p. 302-307. DOI : 10.1016/j.jsb.2014.03.016.

Imaging of post-mortem human brain tissue using electron and X-ray microscopy

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Current Opinion in Structural Biology. 2019-10-01. Vol. 58, p. 138-148. DOI : 10.1016/j.sbi.2019.06.003.

Femtosecond X-ray coherent diffraction of aligned amyloid fibrils on low background graphene

C. Seuring; K. Ayyer; E. Filippaki; M. Barthelmess; J-N. Longchamp et al. 

Nature Communications. 2018-05-09. Vol. 9, num. 1, p. 1836. DOI : 10.1038/s41467-018-04116-9.

Three-Dimensional Imaging of Biological Tissue by Cryo X-Ray Ptychography

S. H. Shahmoradian; E. H. R. Tsai; A. Diaz; M. Guizar-Sicairos; J. Raabe et al. 

Scientific Reports. 2017-07-24. Vol. 7, num. 1, p. 6291. DOI : 10.1038/s41598-017-05587-4.

NRStitcher: non-rigid stitching of terapixel-scale volumetric images

A. Miettinen; I. V. Oikonomidis; A. Bonnin; M. Stampanoni 

Bioinformatics. 2019-12-15. Vol. 35, num. 24, p. 5290-5297. DOI : 10.1093/bioinformatics/btz423.

Mapping of real-time morphological changes in the neuronal cytoskeleton with label-free wide-field second-harmonic imaging: a case study of nocodazole

M. E. P. Didier; C. Macias-Romero; C. Teulon; P. Jourdain; S. Roke 

Neurophotonics. 2019-10-01. Vol. 6, num. 4, p. 45006. DOI : 10.1117/1.NPh.6.4.045006.