Publications

2020

Journal Articles

Glacier retreat changes diurnal variation intensity and frequency of hydrologic variables in Alpine and Andean streams

M. Kneib; S. Cauvy-Fraunié; N. Escoffier; M. Boix Canadell; Å. Horgby et al. 

Journal of Hydrology. 2020-04. Vol. 583, p. 124578. DOI : 10.1016/j.jhydrol.2020.124578.

Preferential retention of algal carbon in benthic invertebrates: Stable isotope and fatty acid evidence from an outdoor flume experiment

T. Kuehmayer; F. Guo; N. Ebm; T. J. Battin; M. T. Brett et al. 

Freshwater Biology. 2020-03-02. DOI : 10.1111/fwb.13492.

Edge influence on understorey plant communities depends on forest management

S. Govaert; C. Meeussen; T. Vanneste; K. Bollmann; J. Brunet et al. 

Journal Of Vegetation Science. 2020-02-05. DOI : 10.1111/jvs.12844.

Dissolved major and trace geochemical dynamics in Antarctic lacustrine systems

K. L. Lecomte; P. A. Vignoni; C. V. Echegoyen; P. Santolaya; K. Kopalova et al. 

Chemosphere. 2020-02-01. Vol. 240, p. UNSP 124938. DOI : 10.1016/j.chemosphere.2019.124938.

Modeling the coupled dynamics of stream metabolism and microbial biomass

P. L. Segatto; T. J. Battin; E. Bertuzzo 

Limnology and Oceanography. 2020-01-22. DOI : 10.1002/lno.11407.

Assessing the impact of ground ice degradation on high mountain lake environments (Lago Nero catchment, Swiss Alps)

C. Scapozza; N. Deluigi; M. Bulgheroni; S. Pera Ibarguren; M. Pozzoni et al. 

Aquatic Sciences. 2020-01-01. Vol. 82, num. 1, p. UNSP 5. DOI : 10.1007/s00027-019-0675-7.

2019

Journal Articles

Benchmarking protocols for the metagenomic analysis of stream biofilm viromes

M. Bekliz; J. Brandani; M. Bourquin; T. J. Battin; H. Peter 

Peerj. 2019-12-20. Vol. 7, p. e8187. DOI : 10.7717/peerj.8187.

Dynamics and potential drivers of CO2 concentration and evasion across temporal scales in high-alpine streams

A. L. V. Horgby; L. Gómez Gener; N. Escoffier; T. I. Battin 

Environmental Research Letters. 2019-12-19. Vol. 14, num. 12, p. 124082. DOI : 10.1088/1748-9326/ab5cb8.

Unexpected large evasion fluxes of carbon dioxide from turbulent streams draining the world’s mountains

Å. Horgby; P. L. Segatto; E. Bertuzzo; R. Lauerwald; B. Lehner et al. 

Nature Communications. 2019-10-25. Vol. 10, num. 1. DOI : 10.1038/s41467-019-12905-z.

Ecosystem engineers: Biofilms and the ontogeny of glacier floodplain ecosystems

M. Roncoroni; J. Brandani; T. I. Battin; S. N. Lane 

Wiley Interdisciplinary Reviews: Water. 2019-08-30. Vol. 6, num. 6. DOI : 10.1002/wat2.1390.

Automated 3D Optical Coherence Tomography to Elucidate Biofilm Morphogenesis Over Large Spatial Scales

A. Depetris; A. Wiedmer; M. Wagner; S. Schäfer; T. J. Battin et al. 

Journal of Visualized Experiments. 2019-08-21. num. 150. DOI : 10.3791/59356.

Alpine Glacier Shrinkage Drives Shift in Dissolved Organic Carbon Export From Quasi‐Chemostasis to Transport Limitation

M. Boix Canadell; N. Escoffier; A. J. Ulseth; S. N. Lane; T. J. Battin 

Geophysical Research Letters. 2019-08-16. Vol. 46, num. 15, p. 8872-8881. DOI : 10.1029/2019GL083424.

Importance of mixotrophic flagellates during the ice-free season in lakes located along an elevational gradient

A. W. Bullet; H. Peter; R. Sommaruga 

Aquatic Sciences. 2019-07-01. Vol. 81, num. 3, p. 45. DOI : 10.1007/s00027-019-0643-2.

Exploring the Sources of Unexpected High Methane Concentrations and Fluxes From Alpine Headwater Streams

S. Flury; A. J. Ulseth 

Geophysical Research Letters. 2019-06-28. Vol. 46, num. 12, p. 6614-6625. DOI : 10.1029/2019GL082428.

High‐resolution spatial sampling identifies groundwater as driver of CO 2 dynamics in an Alpine stream network

Å. Horgby; M. Boix Canadell; A. J. Ulseth; T. W. Vennemann; T. J. Battin 

Journal of Geophysical Research: Biogeosciences. 2019-06-07. DOI : 10.1029/2019JG005047.

Catchment land cover influences macroinvertebrate food-web structure and energy flow pathways in mountain streams

E. Estévez; J. M. Álvarez-Martínez; M. Álvarez-Cabria; C. T. Robinson; T. J. Battin et al. 

Freshwater Biology. 2019-05-07. DOI : 10.1111/fwb.13327.

Distinct air–water gas exchange regimes in low- and high-energy streams

A. J. Ulseth; R. O. Hall; M. Boix Canadell; H. L. Madinger; A. Niayifar et al. 

Nature Geoscience. 2019-03-18. DOI : 10.1038/s41561-019-0324-8.

Unraveling the biophysical underpinnings to the success of multispecies biofilms in porous environments

D. Scheidweiler; H. Peter; P. Pramateftaki; P. de Anna; T. J. Battin 

The ISME Journal. 2019-03-04. DOI : 10.1038/s41396-019-0381-4.

Sources and variability of CO 2 in a pre‐alpine stream gravel bar

K. S. Boodoo; J. Schelker; N. Trauth; T. J. Battin; C. Schmidt 

Hydrological Processes. 2019-02-21. DOI : 10.1002/hyp.13450.

Investigation of subglacial weathering under the Greenland Ice Sheet using silicon isotopes

J. E. Hatton; K. R. Hendry; J. R. Hawkings; J. L. Wadham; T. J. Kohler et al. 

Geochimica Et Cosmochimica Acta. 2019-02-15. Vol. 247, p. 191-206. DOI : 10.1016/j.gca.2018.12.033.

Reviews

Silicon isotopes in Arctic and sub-Arctic glacial meltwaters: the role of subglacial weathering in the silicon cycle

J. E. Hatton; K. R. Hendry; J. R. Hawkings; J. L. Wadham; S. Opfergelt et al. 

Proceedings Of The Royal Society A-Mathematical Physical And Engineering Sciences. 2019-08-01. Vol. 475, num. 2228, p. 20190098. DOI : 10.1098/rspa.2019.0098.

Discovery and Further Studies on Giant Viruses at the IHU Mediterranee Infection That Modified the Perception of the Virosphere

C. Rolland; J. Andreani; A. C. Louazani; S. Aherfi; R. Francis et al. 

Viruses-Basel. 2019-04-01. Vol. 11, num. 4, p. 312. DOI : 10.3390/v11040312.

Theses

Microbial life in porous systems

D. Scheidweiler / T. I. Battin; H. M. Peter (Dir.)  

Lausanne, EPFL, 2019. 

Spatiotemporal Drivers of CO2 Dynamics and Evasion Fluxes from Mountain Streams

A. L. V. Horgby / T. I. Battin (Dir.)  

Lausanne, EPFL, 2019. 

Hydrological and hydraulic solutions for the sustainability of habitat life in human altered streams

A. Niayifar / T. I. Battin; P. Perona (Dir.)  

Lausanne, EPFL, 2019. 

2018

Journal Articles

Variation in Detrital Resource Stoichiometry Signals Differential Carbon to Nutrient Limitation for Stream Consumers Across Biomes

K. J. Farrell; A. D. Rosemond; J. S. Kominoski; S. M. Bonjour; J. Ruegg et al. 

Ecosystems. 2018-12-01. Vol. 21, num. 8, p. 1676-1691. DOI : 10.1007/s10021-018-0247-z.

Modeling Macroroughness Contribution to Fish Habitat Suitability Curves

A. Niayifar; H. J. Oldroyd; S. N. Lane; P. Perona 

Water Resources Research. 2018-11-05. Vol. 54, num. 11, p. 9306-9320. DOI : 10.1029/2018WR022860.

Predator-induced changes in dissolved organic carbon dynamics

R. Limberger; J. Birtel; H. Peter; N. Catalán; D. da Silva Farias et al. 

Oikos. 2018-09-25. Vol. 128, num. 3, p. 430-440. DOI : 10.1111/oik.05673.

Environmental heterogeneity promotes spatial resilience of phototrophic biofilms in streambeds

K. Dzubakova; H. Peter; E. Bertuzzo; C. Juez; M. J. Franca et al. 

Biology Letters. 2018-09-18. Vol. 14, num. 10, p. 20180432. DOI : 10.1098/rsbl.2018.0432.

Experimental evidence reveals impact of drought periods on dissolved organic matter quality and ecosystem metabolism in subalpine streams

A. Harjung; E. Ejarque; T. Battin; A. Butturini; F. Sabater et al. 

Limnology and Oceanography. 2018-08-23. DOI : 10.1002/lno.11018.

Continental-scale decrease in net primary productivity in streams due to climate warming

C. Song; W. K. Dodds; J. Rüegg; A. Argerich; C. L. Baker et al. 

Nature Geoscience. 2018-06-01. Vol. 11, num. 6, p. 415-420. DOI : 10.1038/s41561-018-0125-5.

Light availability impacts structure and function of phototrophic stream biofilms across domains and trophic levels

M. M. Bengtsson; K. Wagner; C. Schwab; T. Urich; T. J. Battin 

Molecular Ecology. 2018-04-21. Vol. 27, num. 14, p. 2913-2925. DOI : 10.1111/mec.14696.

The phantom midge menace: Migratory Chaoborus larvae maintain poor ecosystem state in eutrophic inland waters

K. W. Tang; S. Flury; D. Vachon; C. Ordóñez; D. F. McGinnis 

Water Research. 2018-03-27. Vol. 139, p. 30-37. DOI : 10.1016/j.watres.2018.03.060.

Improving the ecohydrological and economic efficiency of Small Hydropower Plants with water diversion

P. Razurel; L. Gorla; S. Tron; A. Niayifar; B. Crouzy et al. 

ADVANCES IN WATER RESOURCES. 2018. Vol. 113, p. 249-259. DOI : 10.1016/j.advwatres.2018.01.029.

Estimation of the water quality of a large urbanized river as defined by the European WFD: what is the optimal sampling frequency?

L. Vilmin; N. Flipo; N. Escoffier; A. Groleau 

ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH. 2018. Vol. 25, num. 24, p. 23485-23501. DOI : 10.1007/s11356-016-7109-z.

Estimating ecosystem metabolism from continuous multi-sensor measurements in the Seine River

N. Escoffier; N. Bensoussan; L. Vilmin; N. Flipo; V. Rocher et al. 

ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH. 2018. Vol. 25, num. 24, p. 23451-23467. DOI : 10.1007/s11356-016-7096-0.

Changes in bacterioplankton community structure during early lake ontogeny resulting from the retreat of the Greenland Ice Sheet

H. Peter; E. Jeppesen; L. De Meester; R. Sommaruga 

ISME JOURNAL. 2018. Vol. 12, num. 2, p. 544-555. DOI : 10.1038/ismej.2017.191.

Posters

The abundance and diversity of viruses in alpine stream biofilms

M. Bekliz; H. M. Peter; T. I. Battin 

SAME15 – 17th , Leipzig- Allemagne, 12-17.08.2018.

The hydrological regime of Alpine streams controls dissolved organic matter export

M. Boix Canadell 

Association for the Sciences of Limnology and Oceanography, Water Connects, Victoria, Canada, 10-15 June 2018.

The influence of glacial coverage and hydrological regime on CO2 dynamics in glacier-fed streams

A. L. V. Horgby; M. Boix Canadell; A. J. Ulseth; T. I. Battin 

C-CASCADES ITN Training Workshop – Entrepreneurial skills, Deltares, Delft, Netherlands, 28-30.05.2018.

An automated system for OCT imaging of biofilms under different hydrodynamic regimes

A. Depetris 

Biofilms8, Aarhus, Denmark, 27-29.05.2018.

Architectural plasticity of biofilms enhances space exploitation in porous systems

D. Scheidweiler 

Biofilms 8, Aarhus, Denmark, 27-29 may 2018.

RIME: River Meta-Ecosystem Model. Metabolic regimes in Alpine stream networks

P. L. Segatto 

European Geosciences Union General Assembly 2018, Vienna, Austria, 08-13.04.2018.

The hydrological regime of Alpine streams controls dissolved organic matter export

M. Boix Canadell 

European Geosciences Union General Assembly 2018, Vienna, Austria, 09-13.04.2018.

Talks

Vanishing glaciers – how glacier retreat affects microbial communities in glacier-fed freshwater habitats

H. M. Peter 

Universität Oldenburg, Germany, 03.12.2018.

Anthropogenic perturbation on the boundless Carbon cycle

A. L. V. Horgby 

C-CASCADES ITN Mini-Conference 3, MPG, Hamburg, Germany, 24-26.11.2018.

Spatial and Temporal CO2 Dynamics in Alpine Headwater Streams

A. L. V. Horgby; T. I. Battin 

C-CASCADES ITN Annual Meeting 3, MPG, Hamburg, Germany, 02-23.11.2018.

Spatial and Temporal CO2 Dynamics in Alpine Headwater Streams

A. L. V. Horgby; T. I. Battin 

C-CASCADES ITN Annual End of Project Meeting 4, ULB, Brussels, Belgium, 25-26-10.2018.

Measuring the Pulse of Streams

A. L. V. Horgby 

StreamPULSE workshop , Ovronnaz, Switzerland, 17-21.09.2018.

Two-state gas-exchange in streams and the implications of bubbles on scaling CO2 fluxes

A. J. Ulseth; R. Hall; F. G. Hammer; A. L. V. Horgby; M. Boix Canadell et al. 

PHYSICAL PROCESSES IN NATURAL WATERS WORKSHOP 2018, THEME: “PHYSICAL LIMNOLOGY IN A CHANGING WORLD”, Solothurn, Switzerland, 20-24.08.2018.

Molecular DOM dynamics throughout a fluvial network

H. M. Peter 

Association for the Sciences of Limnology and Oceanography, Water Connects, Victoria, Canada, 10-15 June 2018.

Living Downstream from Shrinking Glaciers: Understanding and predicting the hydrology, geomorphology, ecology and biogeochemistry of glacier-fed streams

A. L. V. Horgby; M. Boix Canadell; N. T. G. Escoffier; A. J. Ulseth; T. I. Battin 

Association for the Sciences of Limnology and Oceanography, Water Connects, Victoria, Canada, 10-15 June 2018.

Gas-exchange in high-energy streams: implications of bubbles and scaling CO2 fluxes

A. J. Ulseth; F. G. Hammer; A. L. V. Horgby; S. Flury McGinnis; R. Hall et al. 

Association for the Sciences of Limnology and Oceanography, Water Connects, Victoria, Canada, 10-15 June 2018.

Spatial and Temporal CO2 Dynamics in Alpine Headwater Streams

A. L. V. Horgby; T. I. Battin 

C-CASCADES ITN Training Workshop – Entrepreneurial skills, Deltares, Delft, Netherlands, 28-30.05.2018.

Winter baseflow critical for stream food web productivity in Alpine streams

J. Rüegg; T. I. Battin 

SFS Annual Meeting, NAVIGATING BOUNDARIES IN FRESHWATER SCIENCE, Detroit, Michigan, USA, 20-24.05.2018.

Scaling gas-exchange from low- to high-energy streams

A. J. Ulseth; R. Hall; H. Madinger; T. I. Battin 

SFS Annual Meeting, NAVIGATING BOUNDARIES IN FRESHWATER SCIENCE, Detroit, Michigan, USA, 20-24.05.2018.

Modeling macroroughness contribution to stream ecosystem functioning

A. Niayifar; A. J. Ulseth; P. Perona; S. Lane; T. I. Battin 

European Geosciences Union General Assembly 2018, Vienna, Austria, 08-13.04.2018.

RIME: River Meta-Ecosystem Model. Metabolic regimes in Alpine stream networks’

P. L. Segatto 

European Geosciences Union General Assembly 2018, Vienna, Austria, 08-13.04.2018.

Carbon Cascades from Land to Ocean in the Anthropocene: Processes, Budgets, Variability, and Trends

A. L. V. Horgby 

European Geosciences Union General Assembly 2018, Vienna, Austria, 09-13.04.2018.

Student Projects

Fonctionnement des zones humides et risque sanitaire: déterminisme de la présence de bactéries humaines potentiellement pathogènes ou antibiorésistantes dans les zones humides alluviales.

C. P. R. Henriot 

2018.

2017

Journal Articles

Climate-induced hydrological variation controls the transformation of dissolved organic matter in a subalpine lake

E. Ejarque; S. Khan; G. Steniczka; J. Schelker; M. J. Kainz et al. 

Limnology and Oceanography. 2017. DOI : 10.1002/lno.10777.

Nitrification increases nitrogen export from a tropical river network

L. E. Koenig; C. Song; W. M. Wollheim; J. Ruegg; W. H. Mcdowell 

Freshwater Science. 2017. Vol. 36, num. 4, p. 698-712. DOI : 10.1086/694906.

Full-scale evaluation of methane production under oxic conditions in a mesotrophic lake

D. Donis; S. Flury; A. Stöckli; J. E. Spangenberg; D. Vachon et al. 

Nature Communications. 2017. Vol. 8, num. 1. DOI : 10.1038/s41467-017-01648-4.

Scaling of dissolved organic carbon removal in river networks

E. Bertuzzo; A. M. Helton; T. J. Battin 

Advances in Water Resources. 2017. Vol. 110, p. 136-146. DOI : 10.1016/j.advwatres.2017.10.009.

Greenhouse Gas Emissions from Freshwater Reservoirs: What Does the Atmosphere See?

Y. T. Prairie; J. Alm; J. Beaulieu; N. Barros; T. Battin et al. 

Ecosystems. 2017. DOI : 10.1007/s10021-017-0198-9.

Gravel bars are sites of increased CO2 outgassing in stream corridors

K. S. Boodoo; N. Trauth; C. Schmidt; J. Schelker; T. J. Battin 

Scientific Reports. 2017. Vol. 7, num. 14401. DOI : 10.1038/s41598-017-14439-0.

Ecological strategies and metabolic trade-offs of complex environmental biofilms

R. Niederdorfer; K. Besemer; T. J. Battin; H. Peter 

npj Biofilms and Microbiomes. 2017. Vol. 3, num. 1. DOI : 10.1038/s41522-017-0029-y.

Glacier shrinkage driving global changes in downstream systems

A. M. Milner; K. Khamis; T. J. Battin; J. E. Brittain; N. E. Barrand et al. 

Proceedings of the National Academy of Sciences. 2017.  p. 201619807. DOI : 10.1073/pnas.1619807114.

Alpine glacier-fed turbid lakes are discontinuous cold polymictic rather than dimictic

H. Peter; R. Sommaruga 

Inland Waters. 2017. Vol. 7, num. 1, p. 45-54. DOI : 10.1080/20442041.2017.1294346.

The Chaoborus pump: Migrating phantom midge larvae sustain hypolimnetic oxygen deficiency and nutrient internal loading in lakes

K. W. Tang; S. Flury; H-P. Grossart; D. F. Mcginnis 

Water Research. 2017. Vol. 122, p. 36-41. DOI : 10.1016/j.watres.2017.05.058.

High light intensity mediates a shift from allochthonous to autochthonous carbon use in phototrophic stream biofilms

K. Wagner; M. M. Bengtsson; R. H. Findlay; T. J. Battin; A. J. Ulseth 

Journal of Geophysical Research: Biogeosciences. 2017. Vol. 122, num. 7, p. 1806-1820. DOI : 10.1002/2016JG003727.

Bridging Food Webs, Ecosystem Metabolism, and Biogeochemistry Using Ecological Stoichiometry Theory

N. Welti; M. Striebel; A. J. Ulseth; W. F. Cross; S. Devilbiss et al. 

Frontiers in Microbiology. 2017. Vol. 8. DOI : 10.3389/fmicb.2017.01298.

Climate-Induced Changes in Spring Snowmelt Impact Ecosystem Metabolism and Carbon Fluxes in an Alpine Stream Network

A. J. Ulseth; E. Bertuzzo; G. A. Singer; J. Schelker; T. J. Battin 

Ecosystems. 2017. DOI : 10.1007/s10021-017-0155-7.

Ecohydrological interfaces as hotspots of ecosystem processes

S. Krause; J. Lewandowski; N. B. Grimm; D. M. Hannah; G. Pinay et al. 

Water Resources Research. 2017. Vol. 53, num. 8, p. 6359-6376. DOI : 10.1002/2016WR019516.

Macroinvertebrate community traits and nitrate removal in stream sediments

J. Yao; F. Colas; A. G. Solimini; T. J. Battin; S. Gafny et al. 

Freshwater Biology. 2017. Vol. 62, num. 5, p. 929-944. DOI : 10.1111/fwb.12913.

Dynamic water allocation policies improve the global efficiency of storage systems

A. Niayifar; P. Perona 

Advances in Water Resources. 2017. Vol. 104, p. 55-64. DOI : 10.1016/j.advwatres.2017.03.004.

Land use controls stream ecosystem metabolism by shifting dissolved organic matter and nutrient regimes

T. Fuß; B. Behounek; A. J. Ulseth; G. A. Singer 

Freshwater Biology. 2017. Vol. 62, num. 3, p. 582-599. DOI : 10.1111/fwb.12887.

Probing whole-stream metabolism: influence of spatial heterogeneity on rate estimates

A. C. Siders; D. M. Larson; J. Rüegg; W. K. Dodds 

Freshwater Biology. 2017. Vol. 62, num. 4, p. 711-723. DOI : 10.1111/fwb.12896.

Benthic biofilm controls on fine particle dynamics in streams

K. Roche; J. Drummond; F. Boano; A. Packman; T. Battin et al. 

Water Resources Research. 2017. Vol. 53, num. 1, p. 222-236. DOI : 10.1002/2016WR019041.

Climate-related changes of soil characteristics affect bacterial community composition and function of high altitude and latitude lakes

C. Rofner; H. Peter; N. Catalán; F. Drewes; R. Sommaruga et al. 

Global change biology. 2017. Vol. 23, num. 6, p. 2331-2344. DOI : 10.1111/gcb.13545.

Conference Papers

Ecosystem metabolism and carbon fluxes in a sub-alpine stream network

A. J. Ulseth 

2017-07-06. 

Ecosystem metabolism and carbon fluxes in a sub-alpine stream network

A. J. Ulseth 

2017-04-21. Internal talk, Lausanne, Switzerland,

Posters

Water and environmental management

A. L. V. Horgby 

C-CASCADES Training Workshop, Veolia, Paris, France, 14th – 17th November 2017.

Modeling macroroughness contribution to riverine ecosystem

A. Niayifar; P. Perona; H. J. Oldroyd; S. N. Lane; T. I. Battin 

SCCER-SoE Annual Conference 2017, Birmensdorf (ZH), Switzerland, 14 and 15 September 2017.

The fountain microbiome

H. M. Peter 

SAME15, Zagreb, Croatia, September 3-8, 2017.

Are there viruses in stream microbial biofilms?

M. Bekliz 

SAME15 – 15th Symposium on Aquatic Microbial Ecology, Zagreb, Croatie, 3-8 September 2017.

Catchment transport processes

M. Boix Canadell 

ETH Summer School 2017, Einsieldeln, Switzerland, 2nd to 7th of July 2017.

Temperature sensitivity of ecosystem metabolism across a sub-alpine stream network

A. J. Ulseth; G. A. Singer; T. I. Battin 

Gordon Conference: Interactions of Hydrology, Biology, & Geochemistry. Bates College, Maine, USA, June 26-29, 2017.

A stream-scale model to optimize the water allocation for Small Hydropower Plants and the application to Traditional Systems

A. Niayifar; P. Razurel; P. Perona 

19th EGU General Assembly, EGU2017, Vienna, Austria, 23-28 April, 2017.

Assessment of the ecological impacts of macroroughness elements in stream flows

A. Niayifar; H. J. Oldroyd; P. Perona 

19th EGU General Assembly, EGU2017, Vienna, Austria, 23-28 April, 2017 .

From land to the ocean: processes and budgets

A. L. V. Horgby 

C-CASCADES Mini-Conference 2 at ETHZ, Zurich, Switzerland, January 24th-26th 2017.

Streamwater pCO2in an Alpine Headwater Catchment

Å. Horgby; M. Boix Canadell; A. Ulseth; T. Battin 

C-CASCADES Mini-conference 2: From land to the ocean – processes and budgets, Zürich, Switzerland, January 24-26, 2017.

Talks

Water and environmental management

A. L. V. Horgby 

C-CASCADES Training Workshop, Veolia, Paris, France, 14th – 17th November 2017.

Unveiling biofilm architectural differentiation in sedimentary environments

D. Scheidweiler 

15th Symposium on Aquatic Microbial Ecology, Zagreb, Croatia, 3-8 September 2017.

Where does CH4 come from and where does it go? – New insights in aquatic methane research

S. Flury McGinnis 

20th International Physical Processes in Natural Waters (PPNW) workshop, Helsinki, Finland, 21 – 25 August, 2017.

Water source rather than basal resource variability drives food web patterns in Alpine streams

T. I. Battin; J. Rüegg 

10th European Symposium for Freshwater Sciences, Olomouc, Czech Republic, 02-07.07.2017.

Ecosystem metabolism apparent temperature sensitivity varies across a sub-alpine stream network

A. J. Ulseth; G. A. Singer; T. I. Battin 

Society for Freshwater Science, Raleigh, North Carolina, USA, 2017-06-06.

Glacial-melt overrides longitudinal patterns in basal resources and food webs of Alpine streams

T. I. Battin; J. Rüegg 

Annual meeting of the Society of Freshwater Sciences 2017, Raleigh, NC, USA, 04-08 Jun 2017.

Climate-induced changes in spring snowmelt impact ecosystem metabolism and carbon fluxes in an Alpine stream network

A. J. Ulseth; E. Bertuzzo; G. A. Singer; J. Schelker; T. I. Battin 

Association for the Sciences of Limnology and Oceanography, Honolulu, Hawaii, USA, 26 February – 3 March, 2017.

Toward continuous metabolic regime assessment of alpine streams

N. Escoffier 

Swiss Data Science Center kickoff meeting in Bern , Bern, Switzerland, February 6, 2017.

From land to the ocean: processes and budgets

A. L. V. Horgby 

C-CASCADES annual meeting 2 at ETHZ, Zurich, Switzerland, January 24th-26th 2017.

CLIMATE-INDUCED CHANGES IN SPRING SNOWMELT IMPACT ECOSYSTEM METABOLISM AND CARBON FLUXES IN AN ALPINE STREAM NETWORK

A. Ulseth; E. Bertuzzo; G. Singer; J. Schelker; T. Battin 

Association for the Sciences of Limnology and Oceanography, Honolulu, Hawaii, USA, February 26 – 3 March 2017.

Student Projects

Development of an integrated model for the design of fish-passes for small and medium head differences

S. Majoulet 

2017.

2016

Journal Articles

Carbon fate in a large temperate human-impacted river system: Focus on benthic dynamics

L. Vilmin; N. Flipo; N. Escoffier; V. Rocher; A. Groleau 

Global Biogeochemical Cycles. 2016. Vol. 30, num. 7, p. 1086-1104. DOI : 10.1002/2015Gb005271.

Attached biofilms and suspended aggregates are distinct microbial lifestyles emanating from differing hydraulics

R. Niederdorfer; H. Peter; T. J. Battin 

Nature Microbiology. 2016. Vol. 1, p. 16178. DOI : 10.1038/nmicrobiol.2016.178.

Controls on subsurface methane fluxes and shallow gas formation in Baltic Sea sediment (Aarhus Bay, Denmark)

S. Flury; H. Roy; A. W. Dale; H. Fossing; Z. Toth et al. 

Geochimica Et Cosmochimica Acta. 2016. Vol. 188, p. 297-309. DOI : 10.1016/j.gca.2016.05.037.

Analytical Modeling of Wind Farms: A New Approach for Power Prediction

A. Niayifar; F. Porte-Agel 

Energies. 2016. Vol. 9, num. 9, p. 741. DOI : 10.3390/en9090741.

Methods of approximation influence aquatic ecosystem metabolism estimates

C. Song; W. K. Dodds; M. T. Trentman; J. Rüegg; F. Ballantyne 

Limnology and Oceanography: Methods. 2016. DOI : 10.1002/lom3.10112.

Microbial metabolism mediates interactions between dissolved organic matter and clay minerals in streamwater

W. R. Hunter; T. J. Battin 

Scientific Reports. 2016. Vol. 6, p. 30971. DOI : 10.1038/srep30971.

CO2 evasion from a steep, high gradient stream network: importance of seasonal and diurnal variation in aquatic pCO2 and gas transfer

J. Schelker; G. A. Singer; A. J. Ulseth; S. Hengsberger; T. J. Battin 

Limnology and Oceanography. 2016. DOI : 10.1002/lno.10339.

Rates of microbial hydrogen oxidation and sulfate reduction in Opalinus Clay rock

A. Bagnoud; O. Leupin; B. Schwyn; R. Bernier-Latmani 

Applied Geochemistry. 2016. Vol. 72, p. 42-50. DOI : 10.1016/j.apgeochem.2016.06.011.

Are viruses important in the plankton of highly turbid glacier-fed lakes?

F. Drewes; H. Peter; R. Sommaruga 

Scientific Reports. 2016. Vol. 6, p. 24608. DOI : 10.1038/srep24608.

The ecology and biogeochemistry of stream biofilms

T. J. Battin; K. Besemer; M. M. Bengtsson; A. M. Romani; A. I. Packmann 

Nature Reviews Microbiology. 2016. Vol. 14, num. 4, p. 251-263. DOI : 10.1038/nrmicro.2016.15.

Metabolism of mineral-sorbed organic matter depends upon microbial lifestyle in fluvial ecosystems

W. R. Hunter; R. Niederdorfer; A. Gernand; B. Veuger; J. Prommer et al. 

Geophysical Research Letters. 2016. Vol. 43, p. 1582-1588. DOI : 10.1002/2016GL067719.

Shifts in diversity and function of lake bacterial communities upon glacier retreat

H. Peter; R. Sommaruga 

The ISME Journal. 2016. DOI : 10.1038/ismej.2015.245.

Conference Papers

Searching Pareto-efficient dynamic environmental flows by means of nondominated sorting genetic algorithms II

A. Niayifar; P. Perona 

2016. River Flow 2016, St. Louis, Missouri, USA, July 10-14, 2016.

Book Chapters

Chapter 4.2.1 : The Microbial Ecology of Benthic Environments

R. H. Findlay; T. I. Battin 

Manual of Environmental Microbiology, Fourth Edition; American Society for Microbiology, 2016.

Posters

A Software to Optimize Economic and Ecological Efficiency of Small Hydropower Plants

S. Tron; A. Niayifar; P. Perona 

SHF 2016, Grenoble, France, March 16-17.

The impact of flood variables on riparian vegetation

K. Dzubáková; P. Molnar 

EGU General Assembly 2016, Vienna, Austria, April 17-22, 2016.

Hydraulics drives lifestyle differentiation of attached biofilms and suspended aggregates

R. Niederdorfer; H. Peter 

ISME2016, Montreal, Canada, August 21-26, 2016.

Talks

UNDERSTANDING THE EXTENT OF FOOD WEB ALTERATIONS ON AQUATIC ECOSYSTEM STRUCTURE AND FUNCTION REQUIRES CAREFUL CONSIDERATION OF SCALE

J. Rüegg; A. Argerich; B. Penaluna 

Annual meeting of the Society for Freshwater Science, Sacramento, California, USA, May 21-26, 2016.

Spring snowmelt drives ecosystem metabolism in an Alpine stream network

A. Ulseth; E. Bertuzzo; G. Singer; J. Schelker; T. Battin 

Association for the Sciences of Limnology and Oceanography, Santa Fe, New Mexico, USA, June 5-10, 2016.

2015

Journal Articles

Hydrology controls dissolved organic matter export and composition in an Alpine stream and its hyporheic zone

C. Fasching; A. J. Ulseth; J. Schelker; G. Steniczka; T. J. Battin 

Limnology and Oceanography. 2015.  p. 558-571. DOI : 10.1002/lno.10232.

Coupling virtual watersheds with ecosystem services assessment: a 21st century platform to support river research and management

J. Barquín; L. E. Benda; F. Villa; L. E. Brown; N. Bonada et al. 

Wiley Interdisciplinary Reviews: Water. 2015. Vol. 2, p. 609-621. DOI : 10.1002/wat2.1106.

Dam tailwaters compound the effects of reservoirs on the longitudinal transport of organic carbon in an arid river

A. J. Ulseth 

Biogeosciences. 2015. Vol. 12, num. 14, p. 4345-4359. DOI : 10.5194/bg-12-4345-2015.

Light availability affects stream biofilm bacterial community composition and function, but not diversity

K. Wagner; K. Besemer; N. R. Burns; T. J. Battin; M. M. Bengtsson 

Environmental Microbiology. 2015. Vol. 17, num. 12, p. 5036-5047. DOI : 10.1111/1462-2920.12913.

Chartering new waters of biofilm ecology and evolution

T. J. Battin 

npj Biofilms and Microbiomes. 2015. Vol. 1, p. 15002. DOI : 10.1038/npjbiofilms.2015.2.

Altitudinal patterns of diversity and functional traits of metabolically active microorganisms in stream biofilms

L. Wilhelm; K. Besemer; L. Fragner; H. Peter; W. Weckwerth et al. 

Isme Journal. 2015. Vol. 9, num. 11, p. 2454-2464. DOI : 10.1038/ismej.2015.56.

Storage and release of organic carbon from glaciers and ice sheets

E. Hood; T. J. Battin; J. Fellman; S. O’Neel; R. G. M. Spencer 

Nature Geoscience. 2015. Vol. 8, num. 2, p. 91-96. DOI : 10.1038/Ngeo2331.

2014

Journal Articles

Rare but active taxa contribute to community dynamics of benthic biofilms in glacier-fed streams

L. Wilhelm; K. Besemer; C. Fasching; T. Urich; G. A. Singer et al. 

Environmental Microbiology. 2014. Vol. 16, num. 8, p. 2514-2524. DOI : 10.1111/1462-2920.12392.

A mass-spring model unveils the morphogenesis of phototrophic Diatoma biofilms

K. Celler; I. Hödl; A. Simone; T. J. Battin; C. Picioreanu 

Scientific Reports. 2014. Vol. 4. DOI : 10.1038/srep03649.

No evidence of aquatic priming effects in hyporheic zone microcosms

M. M. Bengtsson; K. Wagner; N. R. Burns; E. R. Herberg; W. Wanek et al. 

Scientific Reports. 2014. Vol. 4. DOI : 10.1038/srep05187.

Microbial degradation of terrigenous dissolved organic matter and potential consequences for carbon cycling in brown-water streams

C. Fasching; B. Behounek; G. A. Singer; T. J. Battin 

Scientific Reports. 2014. Vol. 4. DOI : 10.1038/srep04981.

Ecosystem respiration increases with biofilm growth and bed forms: Flume measurements with resazurin

R. Haggerty; M. Ribot; G. A. Singer; E. Martí; A. Argerich et al. 

Journal of Geophysical Research: Biogeosciences. 2014. Vol. 119, num. 12, p. 2220-2230. DOI : 10.1002/2013JG002498.

Scales and drivers of temporal

H. Peter; G. A. Singer; C. Preiler; P. Chifflard; G. Steniczka et al. 

Journal of Geophysical Research: Biogeosciences. 2014. Vol. 119, num. 6, p. 1078-1091. DOI : 10.1002/2013JG002552.

Functional and Structural Responses of Hyporheic Biofilms to Varying Sources of Dissolved Organic Matter

K. Wagner; M. M. Bengtsson; K. Besemer; A. Sieczko; N. R. Burns et al. 

Applied and Environmental Microbiology. 2014. Vol. 80, num. 19, p. 6004-6012. DOI : 10.1128/AEM.01128-14.

Fluvial network organization imprints on microbial co-occurrence networks

S. Widder; K. Besemer; G. A. Singer; S. Ceola; E. Bertuzzo et al. 

Proceedings Of The National Academy Of Sciences Of The United States Of America. 2014. Vol. 111, num. 35, p. 12799-12804. DOI : 10.1073/pnas.1411723111.

Hydrologic controls on basin- scale distribution of benthic invertebrates

S. Ceola; E. Bertuzzo; G. Singer; T. J. Battin; A. Montanari et al. 

Water Resources Research. 2014. Vol. 50, num. 4, p. 2903-2920. DOI : 10.1002/2013Wr015112.