Recent Publications

Recent Journal Papers

Uncertainty reduction in biochemical kinetic models: Enforcing desired model properties

L. Miskovic; J. Béal; M. Moret; V. Hatzimanikatis 

PLOS Computational Biology. 2019-08-20. Vol. 15, num. 8, p. e1007242. DOI : 10.1371/journal.pcbi.1007242.

110th Anniversary: A Feature-Based Analysis of Static Real-Time Optimization Schemes

B. Srinivasan; D. Bonvin 

Industrial & Engineering Chemistry Research. 2019-08-07. Vol. 58, num. 31, p. 14227-14238. DOI : 10.1021/acs.iecr.9b02327.

Particle-Based Simulation Reveals Macromolecular Crowding Effects on the Michaelis-Menten Mechanism

D. R. Weilandt; V. Hatzimanikatis 

Biophysical Journal. 2019-07-23. Vol. 117, num. 2, p. 355-368. DOI : 10.1016/j.bpj.2019.06.017.

110th Anniversary: From Solubility Parameters to Predictive Equation-of-State Modeling

C. Panayiotou; I. Zuburtikudis; V. Hatzimanikatis 

Industrial & Engineering Chemistry Research. 2019-07-17. Vol. 58, num. 28, p. 12787-12800. DOI : 10.1021/acs.iecr.9b02908.

Education in Process Systems Engineering: Why it matters more than ever and how it can be structured

I. T. Cameron; S. Engell; C. Georgakis; N. Asprion; D. Bonvin et al. 

Computers & Chemical Engineering. 2019-07-12. Vol. 126, p. 102-112. DOI : 10.1016/j.compchemeng.2019.03.036.

Recent Conference Papers, Poster and Talks

ETFL: A Formulation of ME-Models Accounting for Expression and Thermodynamics in Constraint-Based Models

P. G. R. Salvy 

5th Conference on Constraint-Based Reconstruction and Analysis (COBRA 2018), Seattle, WA, USA, October 14-16th 2018.

Predicted responses of a large-scale Pseudomonas putida KT2440 kinetic metabolic model to several single-gene knockouts are consistent with experimental observations

M. Tokic; L. Miskovic; V. Hatzimanikatis 

5th Conference on Constraint-Based Reconstruction and Analysis, Seattle, USA, October 14-16, 2018.

Exploring Biosynthetic Pathways for the Production of Five Methyl Ethyl Ketone Precursors

M. Tokic; N. Hadadi; M. Ataman; D. Neves; B. E. Ebert et al. 

5th Conference on Constraint-Based Reconstruction and Analysis, Seattle, USA, October 14-16, 2018.

Modeling CLiMP-63 spatio-temporal distribution and its interplay with Post-translational modification

R. A. Denhardt-Eriksson; P. Sandoz; L. Gouzi Abrami; S. Ho; B. Kunz 

5th Conference on Constraint-Based Reconstruction and Analysis, Seattle, United States of America, October 14-16, 2018.

Systematic reduction of genome-scale models for the study of metabolic phenotypes of human cells

M. Masid Barcon; M. Ataman; V. Hatzimanikatis 

Constraint-Based Reconstruction and Analysis (COBRA) 2018, Seattle, USA, 14-16 October 2018.