Publications List without graphic


Development of novel tools for imaging of metabolic fluxes in vivo

T. Maric / Director(s) : E. Goun 

Lausanne: EPFL


p. 118.

DOI : 10.5075/epfl-thesis-7551


Real-Time Imaging and Quantification of Peptide Uptake in Vitro and in Vivo

H. Karatas; T. Maric; P. L. D’Alessandro; A. Yevtodiyenko; T. Vorherr et al. 

Acs Chemical Biology


Vol. 14 , num. 10, p. 2197-2205.

DOI : 10.1021/acschembio.9b00439

Cell-specific image-guided transcriptomics identifies complex injuries caused by ischemic acute kidney injury in mice

T. Miyazaki; S. A. Gharib; Y-W. A. Hsu; K. Xu; P. Khodakivskyi et al. 

Communications Biology


Vol. 2 , p. 326.

DOI : 10.1038/s42003-019-0571-7

Bioluminescent-based imaging and quantification of glucose uptake in vivo

T. Maric; G. Mikhaylov; P. Khodakivskyi; A. Bazhin; R. Sinisi et al. 

Nature Methods


Vol. 16 , num. 6, p. 526-+.

DOI : 10.1038/s41592-019-0421-z

Prediction of Occult Lymph Node Metastasis in Head and Neck Cancer with CD31 Vessel Quantification

M. Mermod; M. Bongiovanni; T. Petrova; E. Goun; C. Simon et al. 

Otolaryngology-Head And Neck Surgery


Vol. 160 , num. 2, p. 277-283.

DOI : 10.1177/0194599818791779

Azacyanine dyes and use thereof

R. Sinisi; A. R. Morales Morales; E. Goun; R. Singh 

Patent number(s) :

  • WO2019180475 (A1)


Azacyanine dyes and use thereof

R. Sinisi; A. R. Morales Morales; E. A. Goun; R. Singh 

Patent number(s) :

  • US10633542 (B2)
  • US2019292371 (A1)


Design and validation of bioorthogonal probes for cellular disease models

P. L. D’Alessandro / Director(s) : E. Goun; G. J. Hollingworth 

Lausanne: EPFL


p. 166.

DOI : 10.5075/epfl-thesis-9709

A Universal Assay for Aminopeptidase Activity and Its Application for Dipeptidyl Peptidase-4 Drug Discovery

A. A. Bazhin; M. Chambon; J. Vesin; J. Bortoli; J. W. Collins et al. 

Analytical Chemistry


Vol. 91 , num. 1, p. 1098-1104.

DOI : 10.1021/acs.analchem.8b04672


Bioorthogonal chemistry in bioluminescence imaging

A. Godinat; A. A. Bazhin; E. A. Goun 

Drug Discovery Today


Vol. 23 , num. 9, p. 1584-1590.

DOI : 10.1016/j.drudis.2018.05.022

Azacyanine dyes and use thereof

R. Sinisi; A. R. Morales Morales; E. A. Dubikovskaya; R. S. Dhaka 

Patent number(s) :

  • US2018079906 (A1)


Portable bioluminescence systems and methods for in vivo monitoring of molecular and metabolic events in animals

E. A. Goun; A. Godinat; A. Yevtodiyenko 

Patent number(s) :

  • US2018280542 (A1)


Non-invasive Measurement of Brown Fat Metabolism Based on Optoacoustic Imaging of Hemoglobin Gradients

J. Reber; M. Willershauser; A. Karlas; K. Paul-Yuan; G. Diot et al. 



Vol. 27 , num. 3, p. 689-+.

DOI : 10.1016/j.cmet.2018.02.002


In Vivo Molecular Bioluminescence Imaging: New Tools and Applications

L. Mezzanotte; M. Van ‘T Root; H. Karatas; E. A. Goun; C. W. G. M. Lowik 

Trends In Biotechnology


Vol. 35 , num. 7, p. 640-652.

DOI : 10.1016/j.tibtech.2017.03.012

Preclinical Evaluation of Photoacoustic Imaging as a Novel Noninvasive Approach to Detect an Orthopaedic Implant Infection

Y. Wang; J. M. Thompson; A. G. Ashbaugh; P. Khodakivskyi; G. Budin et al. 

Journal Of The American Academy Of Orthopaedic Surgeons


Vol. 25 , p. S7-S12.

DOI : 10.5435/Jaaos-D-16-00630

Correlation between podoplanin expression and extracapsular spread in squamous cell carcinoma of the oral cavity using subjective immunoreactivity scores and semiquantitative image analysis

M. Mermod; M. Bongiovanni; T. V. Petrova; E. A. Dubikovskaya; C. Simon et al. 

Head And Neck-Journal For The Sciences And Specialties Of The Head And Neck


Vol. 39 , num. 1, p. 98-108.

DOI : 10.1002/hed.24537

A System for In Vivo Imaging of Hepatic Free Fatty Acid Uptake

H. M. Park; K. A. Russo; G. Karateev; M. Park; E. Dubikovskaya et al. 



Vol. 152 , num. 1, p. 78-+.

DOI : 10.1053/j.gastro.2016.10.002


Pre-clinical Evaluation of a Cyanine-Based SPECT Probe for Multimodal Tumor Necrosis Imaging

M. A. Stammes; V. T. Knol-Blankevoort; L. J. Cruz; H. R. I. J. Feitsma; L. Mezzanotte et al. 

Molecular Imaging and Biology


Vol. 18 , num. 6, p. 905-915.

DOI : 10.1007/s11307-016-0972-7

Prediction of occult lymph node metastasis in squamous cell carcinoma of the oral cavity and the oropharynx using peritumoral Prospero homeobox protein 1 lymphatic nuclear quantification

M. Mermod; M. Bongiovanni; T. V. Petrova; E. A. Dubikovskaya; C. Simon et al. 

Head And Neck-Journal For The Sciences And Specialties Of The Head And Neck


Vol. 38 , num. 9, p. 1407-1415.

DOI : 10.1002/hed.24452

The Necrosis-Avid Small Molecule HQ4-DTPA as a Multimodal Imaging Agent for Monitoring Radiation Therapy-Induced Tumor Cell Death

M. A. Stammes; A. Maeda; J. Bu; D. A. Scollard; I. Kulbatski et al. 

Frontiers In Oncology


Vol. 6 , p. 221.

DOI : 10.3389/fonc.2016.00221

Compact solid-state CMOS single-photon detector array for in vivo NIR fluorescence lifetime oncology measurements

H. A. R. Homulle; F. Powolny; P. L. Stegehuis; J. Dijkstra; D. -U. Li et al. 

Biomedical Optics Express


Vol. 7 , num. 5, p. 1797-1814.

DOI : 10.1364/Boe.7.001797


Precursor molecule for the synthesis of d-luciferin

E. Dubikovskaya; A. Godinat 

Patent number(s) :

  • WO2014057139 (A3)
  • WO2014057139 (A2)
  • EP2719703 (A1)


Matrix-Assisted Transplantation of Functional Beige Adipose Tissue

K. M. Tharp; A. K. Jha; J. Kraiczy; A. Yesian; G. Karateev et al. 



Vol. 64 , num. 11, p. 3713-3724.

DOI : 10.2337/db15-0728

Development of a Bioluminescent Nitroreductase Probe for Preclinical Imaging

A. G. Vorobyeva; M. Stanton; A. Godinat; K. B. Lund; G. G. Karateev et al. 

PloS One


Vol. 10 , num. 6, p. e0131037.

DOI : 10.1371/journal.pone.0131037


Bioluminescence imaging of small biomolecules

R. Sinisi; E. Dubikovskaya; G. Budin; G. Karateev; J. Frigell et al. 

Patent number(s) :

  • WO2014111906 (A1)


A biocompatible “split luciferin” reaction and its application for non-invasive bioluminescent imaging of protease activity in living animals

A. Godinat; G. Budin; A. R. Morales; H. M. Park; L. E. Sanman et al. 

Current protocols in chemical biology


Vol. 6 , num. 3, p. 169-89.

DOI : 10.1002/9780470559277.ch140047

Time-resolved imaging system for fluorescence-guided surgery with lifetime imaging capability

F. Powolny; K. Homicsko; R. Sinisi; C. Bruschini; E. Grigoriev et al. 

Biophotonics: Photonic Solutions For Better Health Care Iv


Conference on Biophotonics – Photonic Solutions for Better Health Care IV, Brussels, BELGIUM, APR 14-17, 2014.

DOI : 10.1117/12.2052411

Live-cell multiplane three-dimensional super-resolution optical fluctuation imaging

S. Geissbuehler; A. Sharipov; A. Godinat; N. L. Bocchio; P. A. Sandoz et al. 

Nature Communications


Vol. 5 , p. 5830.

DOI : 10.1038/ncomms6830

Measurement of Long-Chain Fatty Acid Uptake into Adipocytes

E. Dubikovskaya; R. Chudnovskiy; G. Karateev; H. M. Park; A. Stahl 

Methods Of Adipose Tissue Biology; San Diego: Elsevier Academic Press Inc, 2014. p. 107-134.

ISBN : 978-0-12-800280-3

DOI : 10.1016/B978-0-12-800280-3.00007-4


Multiplane 3D superresolution optical fluctuation imaging

S. Geissbuehler; A. Sharipov; A. Godinat; N. Bocchio; E. Dubikovskaya et al. 



Compact imaging system with single-photon sensitivity and picosecond time resolution for fluorescence-guided surgery with lifetime imaging capability

F. Powolny; C. Bruschini; E. Dubikovskaya; E. Grigoriev; O. Michielin et al. 

Clinical And Biomedical Spectroscopy And Imaging Iii


Conference on Clinical and Biomedical Spectroscopy and Imaging III, Munich, GERMANY, MAY 13-16, 2013.

DOI : 10.1117/12.2032537

A Biocompatible in Vivo Ligation Reaction and Its Application for Noninvasive Bioluminescent Imaging of Protease Activity in Living Mice

A. Godinat; H. M. Park; S. C. Miller; K. Cheng; D. Hanahan et al. 

Acs Chemical Biology


Vol. 8 , num. 5, p. 987-999.

DOI : 10.1021/cb3007314


Real-Time Noninvasive Imaging of Fatty Acid Uptake in Vivo

A. H. Henkin; A. S. Cohen; E. A. Dubikovskaya; H. M. Park; G. F. Nikitin et al. 

Acs Chemical Biology


Vol. 7 , num. 11, p. 1884-1891.

DOI : 10.1021/cb300194b


Real-Time Bioluminescence Imaging of Glycans on Live Cells

A. S. Cohen; E. A. Dubikovskaya; J. S. Rush; C. R. Bertozzi 

Journal of the American Chemical Society


Vol. 132 , num. 25, p. 8563-8565.

DOI : 10.1021/ja101766r

In vivo imaging of hydrogen peroxide production in a murine tumor model with a chemoselective bioluminescent reporter

G. C. Van de Bittner; E. A. Dubikovskaya; C. R. Bertozzi; C. J. Chang 

Proceedings of the National Academy of Sciences of the United States of America


Vol. 107 , num. 50, p. 21316-21321.

DOI : 10.1073/pnas.1012864107


Single-molecule motions of oligoarginine transporter conjugates on the plasma membrane of Chinese hamster ovary cells

Lee; E. A. Dubikovskaya; H. Hwang; A. N. Semyonov; H. Wang et al. 

Journal of the American Chemical Society


Vol. 130 , num. 29, p. 9364-70.

DOI : 10.1021/ja710798b

Overcoming multidrug resistance of small-molecule therapeutics through conjugation with releasable octaarginine transporters

E. A. Dubikovskaya; S. H. Thorne; T. H. Pillow; C. H. Contag; P. A. Wender 

Proceedings of the National Academy of Sciences of the United States of America


Vol. 105 , num. 34, p. 12128-33.

DOI : 10.1073/pnas.0805374105