Publications

Field Guide to Northern Tree-related Microhabitats: Descriptions and size limits for their inventory in boreal and hemiboreal forests of Europe and North America

R. Bütler Sauvain; L. Larrieu; L. F. Lunde; M. Maxence; B. Nordén et al. 

A tree-related microhabitat (abbreviated as TreM) is a morphological feature present on a tree, which is used by sometimes highly specialised species during at least one part of their life cycle. These features may serve as shelters, breeding spots, or crucial hibernation or feeding places for thousands of species. Each TreM provides very specific conditions to the inhabiting species, depending on its characteristics, such as size, shape, position in the tree, degree of decomposition of the surrounding wood, condition of the bearing tree (living or dead), exposure to sunlight, microclimate, and moisture content. The diversity of TreMs in a forest stand directly influences the diversity of species because different TreMs provide optimal conditions for various species to thrive. To reinforce biodiversity in a stand and thus improve its resilience, we need to know which TreMs are present, and to preserve and favour them through adapted management practices. This field guide describes 52 TreMs in boreal and hemiboreal forests. These microhabitats can be categorised into 17 groups, with these groups falling within 7 overarching forms. The guide also indicates recommended minimum inventory sizes for each TreM and gives information about the TreM’s life traits, development rhythm, and associated species. This booklet is specifically tailored to boreal and hemiboreal forests.

Swiss Federal Institute for Forest, Snow and Landscape Research WSL, Switzerland, 2024.

Data Champions Lunch Talks – Green Bytes: Data-Driven Approaches to EPFL Sustainability

M. S. P. Cubero-Castan; M. Peon Quiros; C. Gabella; F. Varrato; Loïc Lannelongue 

For this edition of the DC Lunch Talks series, the discussion centered around Data-Driven Approaches to sustainability at EPFL, a topic of significant relevance in the contemporary academic landscape. The event featured a series of short talks by experts who shared their insights and perspectives on the integration of green technologies and hints for research data management and analysis. The speakers and their respective topics are: * “Data and sustainability at a server level”, by Dr. Miguel Peon Quiros, Computer Scientist and administrator of the EPFL EcoCloud; * “Computational work as part of a solution: extracting electricity from heat”, by Enrico Di Lucente, EPFL PhD Student in Materials Science and Engineering, ; * “GREENER principles for environmentally sustainable computational science”, by Dr. Loïc Lannelongue, Specialist in Biomedical data science and research sustainability at Univ. of Cambridge; * “Situation at EPFL and experiences in minimizing our data footprint”, by Dr. Manuel Cubero-Castan, Manager for Sustainable IT Systems Project at EPFL Sustainability. Following the presentations, attendees had the opportunity to engage with the panel in a lively Q&A session, fostering thoughtful conversations on the pivotal role of research data production and storage for tackling the goals of sustainability. The event was held on April 18th, 2024, thanks to the organization of the RDM Team of EPFL Library. You can find here the files of the presentations. You can learn more here about the EPFL Data Champions here, https://go.epfl.ch/datachampions.

Data Champions Lunch Talks – Green Bytes: Data-Driven Approaches to EPFL Sustainability, EPFL, CM 1 221, April 18, 2024.

Timelapse: Geneva Lake, in front of Chexbres – 2019

V. Kindschi 

The dataset is a collection of RGB and thermal images of the Rhone mouth in Geneva Lake, taken every minute in 2019.

2023

German Democratic Radio

A. Thiermann 

Gesellschaft bauen. Architektur als Medium der Demokratie in der frühen Bundesrepublik, Berlin, Germany, March 24-25, 2022.

Aesthetics of Conservation; Aesthetics of Extinction. The Chilean Pavilion at the 59th Art Biennale

A. Thiermann 

Alfredo Thiermann in Conversation with Sarah Alberani at the Accademia Tedesca Roma Villa Massimo.

Keynote Lecture at Villa Massimo, German Academy in Rome, Rome, Italy, October 10, 2022.

Type and History

A. Thiermann 

Tackle The Type: Filling Stations, Lausanne, Lausanne, Switzerland, March 27, 2023.

The Broadcasting House: Architecture, Type, and the Culture Industry

A. Thiermann 

The Fifth Typology, Lausanne, Switzerland, April 4-5, 2023.

Infrastructures of Solidarity, Infrastructures of Totalitarism

A. Thiermann 

Between 11 September 1973 and 11 March 1990, the silenced voices of many were dissolved into electromagnetic waves so they could be transmitted and heard in Chile. For sixteen years, the broadcasting house of the German Democratic Republic (GDR) – the Funkhaus in Nalepastrasse in Berlin– broadcast, every day, a radio programme with information, music, and news from Berlin to Chile. Hundreds of Chilean exiles and cultural and political figures passed through the Funkhaus to talk back to their distant country. Broadcast at night, ‘Chile al Día’ was listened to attentively and secretly from the beginning to the end of the dictatorship. Far from being an ephemeral phenomenon, the desire for global hegemony over the production and transmission of information through radio demanded large infrastructures and sophisticated buildings that were conceived as technical wonders as much as political agents. In this presentation, those buildings are analyzed and the programme is contextualised within the broader set of conflicts and political disputes that characterized the Cold War and still haunt us in the present.

Listening to the World – 100 Years of Radio organised by the Haus der Kulturen der Welt (HKW), Berlin, Germany, 21-22.10.2023.

Notes on Los Angeles

A. Thiermann 

Jean-Louis Cohen was a historian and curator of architecture who inspired and impacted the work of many. His unexpected passing this summer was a loss to the entire expanded field of architecture. A pioneer of transnational and transmedial histories of architecture, he was a cultural translator whose work and influence crossed boundaries between continents and epochs – from Paris to Moscow, Casablanca to Kharkiv, New York to Brasilia. He had the true gift to mediate and connect people and ideas within academia as well as beyond it. Based in between France and the US for most of his life, his work, impact, and network was profoundly transnational. This gathering – convened and chaired by Markus Lähteenmäki (UCL Institute of Advanced Studies) and Michał Murawski (UCL School of Slavonic and East European Studies) – brings together his former mentees, collaborators, interlocutors, friends and followers in and around the UK. The symposium presents a dozen short speeches that vary from anecdotes and recollections to reflections on his method and its impact and critical reconsiderations of historiography.

Translational Histories of Architecture. A London symposium in honour of Jean-Louis Cohen (1949–2023), London, Great Britain, 2023-11-27.

Comparison of Three Viral Nucleic Acid Preamplification Pipelines for Sewage Viral Metagenomics

X. Fernandez Cassi; T. Kohn 

Viral metagenomics is a useful tool for detecting multiple human viruses in urban sewage. However, more refined protocols are required for its effective use in disease surveillance. In this study, we investigated the performance of three different preamplification pipelines (specific to RNA viruses, DNA viruses or both) for viral genome sequencing using spiked-in Phosphate Buffered Saline and sewage samples containing known concentrations of viruses. We found that compared to the pipeline targeting all genome types, the RNA pipeline performed better in detecting RNA viruses in both spiked and unspiked sewage samples, allowing the detection of various mammalian viruses including members from the Reoviridae, Picornaviridae, Astroviridae and Caliciviridae. However, the DNA-specific pipeline did not improve the detection of mammalian DNA viruses. We also measured viral recovery by quantitative reverse transcription polymerase chain reaction and assessed the impact of genetic background (non-viral genetic material) on viral coverage. Our results indicate that viral recoveries were generally lower in sewage (average of 11.0%) and higher in Phosphate Buffered Saline (average of 23.4%) for most viruses. Additionally, spiked-in viruses showed lower genome coverage in sewage, demonstrating the negative effect of genetic background on sequencing. Finally, correlation analysis revealed a relationship between virus concentration and genome normalized reads per million, indicating that viral metagenomic sequencing can be semiquantitative.

Food and Environmental Virology

2024

DOI : 10.1007/s12560-024-09594-3

How to Support Students to Develop Skills that Promote Sustainability

S. R. Isaac; J. de Lima 

Teaching Transversal Skills for Engineering Studens: A Practical Handbook of Activities with Tangibles; EPFL, 2024.

DOI : https://doi.org/10.5281/zenodo.10731771

How to Support Students Giving Each Other Constructive Feedback, Especially When It Is Difficult to Hear

S. R. Isaac; J. de Lima 

Teaching Transversal Skills for Engineering Studens: A Practical Handbook of Activities with Tangibles; EPFL, 2024.

DOI : https://doi.org/10.5281/zenodo.10392344

How teachers can use the 3T PLAY trident framework to design an activity that develops transversal skills

S. R. Isaac; J. de Lima 

Teaching Transversal Skills for Engineering Studens: A Practical Handbook of Activities with Tangibles; EPFL, 2024.

DOI : https://doi.org/10.5281/zenodo.10992806

The conceptual foundations of innate immunity: Taking stock 30 years later

Pradeu Thomas; Thomma Bart T.P.H.; Girarding Stephen; B. Lemaitre 

While largely neglected over decades during which adaptive immunity captured most of the attention, innate immune mechanisms have now become central to our understanding of immunology. Innate immunity provides the first barrier to infection in vertebrates, and it is the sole mechanism of host defense in invertebrates and plants. Innate immunity also plays a critical role in maintaining homeostasis, shaping the microbiota, and in disease contexts such as cancer, neurodegeneration, metabolic syndromes, and aging. The emergence of the field of innate immunity has led to an expanded view of the immune system, which is no longer restricted to vertebrates and instead concerns all metazoans, plants, and even prokaryotes. The study of innate immunity has given rise to new concepts and language. Here, we review the history and definition of the core concepts of innate immunity, discussing their value and fruitfulness in the long run.

Immunity

2024-04-09

Vol. 57 , num. 4, p. 613-631.

DOI : 10.1016/j.immuni.2024.03.007

Radio-Activities: Architecture and Broadcasting in Cold War Berlin

A. Thiermann 

A historical and theoretical account of the city of Berlin from the intertwined perspectives of architecture, environmental, and media studies. In 1945, having occupied German territory, Soviet troops made two strategic moves: they dismantled the Deutschlandsender III radio transmission tower, the single tallest structure at the time in Europe, and they seized the Haus des Rundfunks in West Berlin, a monumental building designed by Hans Poelzig. These moves were crucial both symbolically and technically, as together they sparked what would become a veritable radio war between the Eastern and Western blocs during the Cold War. In Radio-Activities, Alfredo Thiermann Riesco investigates this spatial conflict as he interrogates the political, technological, and environmental dimensions of architecture at a time when buildings began to interact with the remote transmission of information. By its very nature, the medium of radio promised to evaporate the intrinsic material aspect of architecture; in fact, it did no such thing. By way of transscalar analyses, Thiermann Riesco pays particular attention to Berlin’s buildings, walls, transmission towers, factories, research institutions, and territorial organizations during the Cold War period, which enabled the production, reproduction, and transmission of sonic-based content across the divide of the Iron Curtain. In doing so he reveals underresearched continuities between politics, technology, media, and architecture, in the process reframing notions of national and transnational boundaries. A timely and fascinating study, Radio-Activities brilliantly interrogates the status and agency of buildings during a period-not unlike today’s-of increasingly hyperconnected, ubiquitous, and invisible modes of coexistence.

Cambridge, MA; London: MIT Press, 2024.

ISBN : 9780262048705

No Last One

A. Thiermann 

Revue Matières

2024

num. 18.

All That is Solid

A. Thiermann 

Transcalar Prospects in Climate Crisis; Zurich: Lars Müller, 2024.

Turba Tol – Hol Hol Tol

A. Thiermann 

ARQ (Santiago)

2022

num. 112, p. 42–50.

Echo’s Chambers by Joseph Clarke (Book Review)

A. Thiermann 

Constructs Yale Architecture

2022

p. 15.

Coming to Terms with Drawing

A. Thiermann 

Pan Scroll Zoom. Teaching Architecture Under Lockdown: 20 Studios Worldwide that Went Online; London: Drawing Matter, 2021. p. 221.

Drawing the Line

A. Thiermann 

a+u Architecture And Urbanism Magazine

2021

Vol. 11 , num. 614, p. 197–198.

Learning to Learn: Review of ‘The University Is Now on Air: Broadcasting Modern Architecture

A. Thiermann 

ARQ (Santiago)

2019

num. 102, p. 3-11.

The House at the End of the World: On the Possibility of Architecture in Capitalist Ruins

A. Thiermann 

Archithese

2019

num. 3, p. 62–71.

Radio as Architecture: Notes toward the Redefinition of the Berlin Walls

A. Thiermann 

War Zones: gta papers; Zurich: gta Verlag, 2019. p. 134.

ISBN : 978-3-85676-390-9

DOI : 10.54872/gta-pap-2

Radio-Activities

A. Thiermann 

Thresholds

2017

num. 45, p. 194–209.

The Ground as Forensic Evidence: Alfredo Thiermann in Conversation with Eyal Weizman

A. Thiermann 

ARQ (Santiago)

2016

num. 93, p. 14–23.

White on White

A. Thiermann 

Are We Human? The Design of the Species: 2 Seconds, 2 Days, 2 Years, 200 Years, 200,000 Years; Zurich: Lars Müller, 2016.

ISBN : 978-3-03778-511-9

What Does an Invisible Architecture Look Like

A. Thiermann 

The Real Review

2016

num. 1, p. 70-74.

Dynamics of the Void

A. Thiermann 

ARQ (Santiago)

2015

num. 90, p. 70-71.

Dynamics of the Void

A. Thiermann 

Trace Magazine

2014

num. 9, p. 104–115.

Artefact Nr. I

A. Thiermann 

Trace Magazine

2014

num. 9, p. 30-40.

Artefact Nr. I

A. Thiermann 

Potlatch Journal of Architecture

2013

num. 3, p. 56–69.

Artefacto Nr. I

A. Thiermann 

ARQ

2013

num. 83, p. 62–67.

Artefact Nr. I.

A. Thiermann 

Zeppelin Magazine

2014-11-01

num. 129, p. 43–45.

Characterization of the gut-bone marrow axis through bile acid signaling

A. Alonso Calleja / Director(s) : K. Schoonjans; O. M. Naveiras Torres-Quiroga 

Communication between the intestine and other organs such as the lungs, brain or bones is mediated by several metabolites, like short-chain fatty acids or bile acids, that relay information about nutritional and microbiota status. Bile acids are endogenous surfactants that are key in the intestinal absorption of dietary fats. Bile acids also function as bona fide hormones mediating pleiotropic effects thanks to several receptors that are responsive to these molecules, including dedicated receptors such as farnesoid X receptor or Takeda G-protein receptor 5 (TGR5). TGR5 modulates the functions of both digestive and extra-digestive systems, regulating metabolism in a multitude of tissues. The effects of TGR5 have been described in a variety of cells, including adipocytes, osteoblasts and endothelial cells. Adipocytes, osteoblasts and endothelial cells are key components of the hematopoietic niche, a structure that regulates hematopoietic stem and progenitor cell function, including quiescence self-renewal and commitment towards differentiated cells. TGR5 has been described to have an immunomodulatory in cells of the myeloid lineage role but its effect on the bone marrow has not been described yet. The activity of the bone marrow is regulated by the microbiome as germ-free or antibiotic-treated mice show alterations in hematopoiesis. Since the bile acid pool shapes and is shaped by the microbiome, we hypothesize that bile acids serve as signalling molecules that modulate bone marrow activity. To unveil the potential communication of the gut and the bone marrow via bile acid signalling, we will focus on understanding the alterations in the bone marrow of mice lacking TGR5 using a combination of in vitro and in vivo approaches. For this project, we will first define the global impact of TGR5 on steady-state and stress hematopoiesis using a TGR5 KO murine model. We will then dissect the action of TGR5 in the bone marrow by separately evaluating its effect in the hematopoietic compartment and the niche. Finally, we will screen a library of bile acids to obtain insight into their potential for the improvement of hematopoietic recovery in situations of high demand. Our preliminary results indicate that the lack of TGR5 increases the number of hematopoietic cells in the bone marrow and decreases the short-term repopulating capacity of bone marrow cells upon bone marrow transplantation. Furthermore, it brings about changes in the bone marrow stroma as we have found an increase in adipogenic precursor cells concomitant with a decrease in osteochondrogenic progenitor cells. Moreover, our preliminary results indicate that stroma cells isolated from TGR5 KO mice might be less supportive of hematopoietic cell proliferation in vitro. Our ultimate goal is to use the knowledge obtained from this project to provide a basis to guide rational modifications of the microbiome and steer the production of bile acids in a demand-adapted manner. In doing so, our objective is to open novel therapeutic avenues to aid in the recovery of patients suffering from hematopoietic failure by harnessing the gut-bone marrow axis.

Lausanne: EPFL

2024

p. 98.

DOI : 10.5075/epfl-thesis-11206

Studies of crystal collimation for heavy ion operation at the LHC

R. Cai / Director(s) : M. Seidel; R. Bruce 

At CERN’s Large Hadron Collider (LHC), proton and heavy-ion beams are accelerated to multi-TeV energies to be collided for the needs of the scientific community around the world. The total stored beam energy of tens to hundreds ofMJ creates potential threats to the hardware around the collider in case of uncontrolled beam loss. Energy deposited by lost particles may damage impacted elements or cause the LHC magnets to lose their superconducting state, creating unnecessary downtime and decreasing physics production efficiency. To protect the machine a multi-stage collimation system was installed, designed primarily for proton operation but to be used also for heavy ions. However, with the upgrades for High-Luminosity LHC (HL-LHC), the total stored beam energy is to increase from 13MJ to around 20MJ. This demands an upgrade also from the collimation side to safely intercept higher beam losses that are to be expected due to higher intensity. Because of the fragmentation of heavy ions inside the collimators, which causes a significant leakage out of the collimators of particles with a charge-to-mass ratio that is different from the main beam, the collimation for heavy ions is more challenging than for protons. Hence, based on the studies performed in the past, it was decided to introduce a new collimation method with a potential for increased performance, called crystal collimation, in the operational baseline, already in 2023, when also the beams from the injectors with higher intensity became available. The imminence of ion operations with crystal collimation presses for amore thorough understanding of this novel method applied on heavy ions. For this reason, this thesis describes a complete simulation framework that has been built for ion crystal collimation. This tool allows a better understanding of the characteristics of crystal collimation for ions, probe for collimation optimizations, and performpredictive analysis for future collimation configurations. The simulation framework is based on the existing SixTrack-FLUKA coupling. This thesis presents the construction of the simulation framework, the benchmark with old and new data, detailed simulation studies of the LHC collimation performance in various configurations, including the one of the first heavy-ion physics run with crystal collimation in 2023, and other alternative setups.

Lausanne: EPFL

2024

p. 245.

DOI : 10.5075/epfl-thesis-11188

Engineering novel protein interactions with therapeutic potential using deep learning-guided surface design

A. Marchand / Director(s) : B. E. Ferreira De Sousa Correia 

Proteins are foundational biomolecules of life playing a crucial role in a myriad of biological processes. Their function often requires interplay with other biomolecules, including proteins themselves. Protein-protein interactions (PPIs) are essential for maintaining cell homeostasis, but are also involved in the progression of several diseases, being pathogenic, neuro-degenerative or cancer related. Therefore, PPI engineering has always been at the basis of several protein-based therapeutics and other biotechnology tools. However, most PPI engineering strategies so far relied on extensive experimental optimization or computational tools that depend on prior knowledge. Indeed, challenges remain for protein targets where no structural or experimental data are available, or for interfaces that involve non-protein components such as small molecules. To explore and address these limitations, this work aims to leverage machine-learning and physics-based methods for the design of de novo protein interactions with therapeutic potential, that will ultimately be characterized and validated with established laboratory techniques. The first part of this thesis showcases the translational capabilities of PPI designs. For this purpose, we rationally designed switchable protein-based therapeutics by integrating a previously established chemically-disruptable heterodimer (CDH). To optimize this OFF-switch system, we employed in silico methods based on physics-driven predictions, followed by rigorous in vitro validations to enhance its switchability in solution. This resulted in the development of a protein therapeutic exhibiting significantly improved drug-based controllability in mice models. Nevertheless, most antibody and protein therapeutics discovered using experimental methods are agnostic to where and how these proteins engage their respective target. Despite recent advances, predicting an amino acid sequence that binds to a specific interface remains a major challenge for the field. To address this, a geometric deep learning framework, called MaSIF, was developed in our group to predict PPI interfaces and their corresponding binding partners based solely on the vectorized geometric and chemical features of the protein surface, also known as “fingerprints”. In this work, we improved MaSIF by leveraging a database of small binding motifs to design novel protein binders for four therapeutically relevant targets. All protein binders were validated experimentally and reached native-like affinities after pure in silico generation. Finally, we generalized our framework to design drug-bound protein complexes via the formation of neosurfaces that arise upon small molecule binding. The versatility of our approach allowed us to computationally design and experimentally validate binders against three small molecule-protein complexes. All designs exhibited drug-dependent binding with native-like affinities and were functionalized as ON-switch systems for different cell-based applications. Altogether, this dissertation provides new insights for the design of site-specific de novo protein interactions and their potential implementation in therapies by using innovative computational tools. On top of improving our understanding of PPI design, this work represents a new avenue for the development of biotechnology tools with concrete applications that can benefit patients.

Lausanne: EPFL

2024

p. 208.

DOI : 10.5075/epfl-thesis-10799

Querying the Digital Archive of Science: Distant Reading, Semantic Modelling and Representation of Knowledge

A. Volynskaya / Director(s) : J. Baudry; J-F. Bert 

The archive of science is a place where scientific practices are sedimented in the form of drafts, protocols of rejected hypotheses and failed experiments, obsolete instruments, outdated visualizations and other residues. Today, just as science goes more and more digital, so does its archive, giving rise to new research practices and opening new frontiers of knowledge for the historian (from big data to the longue durée). These collections clearly differ from the traditional lieux de mémoire. What they store are not tangible and authentic objects, but data to be processed and interpreted by computer algorithms and software. The way archival data is situated, described and presented to the user is prefigured and mediated by digital technologies and infrastructures. How do these new digital infrastructures operate and shape our encounter with the scientific past? What can we learn about the science of the past from its residues as they go digital and turn into data? And how could these collections be made meaningful for the queries of both historians and the wider public? I argue that the digital archive does more than store some remnants of the past; it becomes an active agent in their interpretation. For this reason, we need to explore the limits, conditions, and affordances of the interpretations it offers and makes possible. This dissertation probes into how we understand and interpret the past of science through its digital archive, focusing on its specific modes of representation, the methods of treating the past it offers, and its transmission mechanisms. Based on a large corpus of scientific collections and mixing quantitative and qualitative approaches, the study assembles the elements of a humanist (instead of engineering-oriented) ontology for the scientific archive, transferring concepts and perspectives from the history of science into computational language. Experimenting with the methods offered by the digital (distant reading, semantic modelling) and the interpretations they enable, this dissertation reimagines the digital archive as a way of making the past (of science).

Lausanne: EPFL

2024

p. 320.

DOI : 10.5075/epfl-thesis-10732

Hybrid organic/metal-oxide shells on semiconductor nanocrystals via colloidal atomic layer deposition

O. Segura Lecina / Director(s) : R. Buonsanti 

The escalating energy demand and the imperative necessity to reduce the carbon footprint require transformative approaches to energy conversion. Materials chemistry plays a pivotal role in addressing these global challenges by developing novel materials for cleaner, more efficient, and sustainable technologies. Colloidal semiconductor nanocrystals, amongst which quantum dots (QDs), have emerged as versatile building blocks for energy mediation. QDs exhibit intrinsic properties that make them unique platforms to investigate and to provide solutions for different energy conversion processes. In particular, their ability to interact with light enables their use in photovoltaics (converting photons into electricity), photon manipulation (up- and down-conversion), and photon-to-chemical bond conversion in photocatalysis. However, challenges persist towards their implementation, including ensuring chemical and colloidal stability for prolonged device lifetimes and advancing QD-based photocatalysis. Furthermore, more efforts towards exploring alternative QD compositions are needed to address environmental and toxicity concerns. This thesis focuses on further developing and understanding a colloidal atomic layer deposition (c-ALD) method for depositing metal-oxide matrices on QDs while preserving their colloidal stability. The first two experimental chapters focus on the nucleation mechanisms of metal-oxide coatings by c-ALD. Chapter 3 discusses the role of the native ligands during the nucleation using CdSe QDs and alumina as model system and reveals that the nature of the coating is in fact a hybrid metal-oxide/ligand structure. This insight is utilized in Chapter 4, where c-ALD is used as a surface treatment wherein a sub-nanometer thin metal-oxide shell enhances the stability of the QDs by hindering the ligand dynamicity. Additionally, the impact of the initial surface chemistry of the QDs on the growth of the metal-oxide coatings is investigated by assessing QDs with two different compositions, namely CdSe and PbS. Chapter 5 focuses on the development of CdSe@AlOx/chromophore heterostructures for triplet energy transfer, oriented to the application of photocatalysis of organic transformations. A novel c-ALD chemistry enables the growth of an interfacial single metal-oxide layer that offers more binding sites for the chromophore ligands compared to traditional mass driven exchanges. This chapter elucidates the challenges and opportunities in employing QDs for efficient energy transfer processes. Finally, Chapter 6 extends the c-ALD method to InP QDs, which results in optical and chemical stability enhancements. Insight into the surface chemistry of InP QDs are gained along with its impact on the nucleation of metal-oxide precursors. Concluding with insights and future prospects in Chapter 7, this thesis underscores the significance of surface chemistry in QD applications and highlights the potential of c-ALD for advancing energy conversion technologies.

Lausanne: EPFL

2024

p. 157.

DOI : 10.5075/epfl-thesis-10708

Electrical and Optical Manifestations of Flat Band Physics in Van der Waals Materials

G. Pasquale / Director(s) : A. Kis 

The scientific progress is significantly transforming contemporary society with the introduction and widespread application of technologies like artificial intelligence and quantum computing. Despite their profound impact, these technologies necessitate enhanced energy consumption and sophisticated heat management strategies for efficient functioning. Given the current technological limitations in meeting the rapidly increasing energy demands, it is imperative to delve into the exploration of novel materials. This is crucial for identifying previously unknown physical properties that are promising for practical applications, thereby addressing the critical gap in sustainable energy solutions. In this context, this doctoral thesis explores the electrical and optical properties of an emergent class of materials, the layered metal monochalcogenide family. The thesis begins by discussing the fabrication of air-sensitive devices based on the metal monochalcogenide indium selenide. Once a stable device is achieved, a comprehensive investigation into the unique properties and potential applications of these materials in various domains such as optical, electrical, chiral, thermoelectric, and magnetic is presented. Key findings include the optical investigation of flat band-induced many-body interactions probed by exciton complexes, followed by the first observation of ambipolar transport in few-layer indium selenide. The last finding enabled the discovery of an electrical method based on the observation of an onset in the out-of-plane tunneling current which can be used to detect the flat band in a fast, reliable, and cost-effective way. This technique is applicable to any flat band material in a field effect structure, marking an important milestone in the study of flat band physics in 2D materials. Such a method allowed the discovery of chirality-sensitive tunneling differential conductance in an originally achiral system, and the experimental realization of spin-polarized hole transport at the valence band edge, which was theoretically predicted almost a decade ago. The thermoelectric and thermomagnetic properties of this class of materials are further explored, with the realization of the first electrically tunable giant Nernst effect operating at ultra-low temperatures. The work highlights metal monochalcogenides as a promising class of materials for future optical and electrical applications, unlocking properties and functionalities currently unexplored by the research community. This study contributes to the field of material science and technology, addressing urgent energy challenges and paving the way for the development of next-generation energy-efficient devices and systems.

Lausanne: EPFL

2024

p. 273.

DOI : 10.5075/epfl-thesis-10634

Plasmonically enhanced molecular junctions for investigation of atomic-scale fluctuations in self-assembled monolayers

S. P. Amirtharaj / Director(s) : C. M. G. Galland 

Molecular junctions represent a fascinating frontier in the realm of nanotechnology and are one of the smallest optoelectronic devices possible, consisting of individual molecules or a group of molecules that serve as the active element sandwiched between conducting electrodes. As devices approach the molecular scale, quantum mechanical effects become dominant, leading to a host of novel properties that do not exist in larger-scale devices. This thesis delves into electrically integrated and plasmonically enhanced molecular junctions, which are instrumental in understanding interactions at the metal-molecule interfaces. These junctions combine the optical capabilities of high field confinement (and enhancement) and high radiative efficiency, with the electrical capabilities of molecular transport. They can probe the electronic structure and dynamics of the molecules within the junction, offering a view of the electronic transitions, molecular vibrations, conformational changes in the molecules, charge transfer, and quantum transport properties. Their potential in pioneering nanoscale optoelectronic applications, such as ultrafast electronics and nanosensing, is significant. However, the complexity involved in creating scalable and robust molecular junctions at ambient operating conditions poses a substantial challenge. In this thesis, we present the utilization of a self-assembled molecular junction equipped with a nanoparticle bridge to explore the correlated fluctuations in conductance and the light emission induced by inelastic electron tunneling at room temperature. Unlike large-area SAM junctions, both the electrical conductance and light emission are remarkably sensitive to atomic-scale fluctuations, even though hundreds of molecules are present in the junction. This phenomenon mirrors the behavior observed in picocavities in Raman scattering and the luminescence blinking seen in photo-excited plasmonic junctions. Moving localization of these point-like emitters (identified as the movement of gold atoms at the surface) is observed in the light emission spectra and is supported by the conductance data. The research conducted for this thesis demonstrates a scalable molecular junction platform that facilitates both optical and electrical interrogation at the atomic level.

Lausanne: EPFL

2024

p. 133.

DOI : 10.5075/epfl-thesis-10443

Exact Obstacle Avoidance for Robots in Complex and Dynamic Environments Using Local Modulation

L. Huber / Director(s) : A. Billard 

Robots outside of the fenced factories have to deal with continuously changing environment, this requires fast and flexible modes of control. Planning methods or complex learning models can find optimal paths in complex surroundings, but they are computationally expensive and hence not suitable for evaluation on-board. Dynamical systems (DS) as a mean to control robots allows to adapt the motion on the fly to outside disturbances and to continue the task without stopping. While theoretical collision avoidance for a velocity controlled robot can be guaranteed, the methods cannot ensure that an agent always reaches a goal. In this thesis, we investigate the problem of combining learned motion with reactive adaptation in a DS framework. We want to analyse asymptotic convergence to a desired motion by separating direction and magnitude of a desired motion (direction space). In the first year of the thesis, a closed-form approach to avoid a category of concave obstacles (star-shaped) has been developed. It applies to objects with non-smooth derivable surfaces, i.e. polygons with sharp edges. The algorithm guarantees that the robot will not penetrate the obstacles and reach a desired target. Additionally using an inverted description of the obstacles and the corresponding distance function allows to safely navigate inside a volume. These inverted obstacles can represent walls of a room or joint limits of a robot. These methods have been tested in simulation and on real robots in a laboratory environment. In future work, we plan to extend the current obstacle avoidance algorithm by focusing on the direction of the flow of the DS. We want to extend the algorithm to be able to handle uncertainties in environment prediction. Additional constraints will be observed to ensure a safe motion. A similar problem arises, when defining a desired velocity field for an agent, but controlling in force and torque. We hope to tackle these two problem by introducing directional repulsion in velocity and force, respectively. In a second part, existing learning methods should be extended and adapted to a description of a DS. We expect that separating direction and magnitude of the motion will allow to learn a wide range of motions while ensuring stability of the system. The last contribution should be a unifying frame work of learning motion and dynamic obstacle avoidance under velocity and force control, combining the work developed during this thesis. Continuous collaboration with colleagues and students is sought to accelerate and test real-world implementations. Since this requires the analysis of sensors, considering constraints and controllers of the robots as well as the extension of the algorithm to joint-space.

Lausanne: EPFL

2024

p. 256.

DOI : 10.5075/epfl-thesis-10373

S-acylation and lipid exchange at the ER-Golgi membrane contact sites regulate pathogen entry in human cells

M. U. Anwar / Director(s) : F. G. van der Goot Grunberg; G. D’Angelo 

Cells have evolved endocytic pathways to internalize different molecules, to regulate intra-cellular communication and their interaction with external environment. Pathogens have co-evolved with cells to exploit these processes for infections. In particular, the exotoxins of bacteria target precise cellular-pathways to get internalized and exert their activity in the cytosol. Therefore, studying these intoxication processes provide unique understanding not only of bacterial infections, but also of host cellular mechanisms. Previous work on anthrax toxins have shown that the initial steps of toxin entry, which occur at the plasma-membrane, are modulated by S-acylation. In this thesis, the quest for a deeper understanding of anthrax toxin entry led us to study the cellular trafficking of an acyl-thioesterase, APT2 which de-acylates anthrax toxin receptor, CMG2 at plasma-membrane. Here, we show that APT2 accesses cellular membranes using multi-step process including its S-acylation at the endoplasmic reticulum (ER) and Golgi. This S-acylation event is indispensable for its Golgi localization and trafficking to plasma-membrane, where it modifies local substrates such as CMG2. At plasma-membrane, APT2 is deacylated by resident acyl-thioesterase(s). Toxin endocytosis further relies on the existence of lipid-nanodomains which promote clustering of receptors and cleavage of toxin subunits by pro-protein convertases. A screen aimed at identifying novel genes involved in anthrax toxin uptake unraveled an unexpected mechanism underlying the formation of these nanostructures. Our data show that lipid exchange at the ER-Golgi membrane contact sites is required for nanodomain assembly at the plasma-membrane. At these contacts, OSBP and CERT complexes interact via the p24 family members, TMED2/10, making a supercomplex which drives cholesterol and ceramide transfer from ER to Golgi membranes. Lastly, we show that this ER-Golgi localized supercomplex is maintained by S-acylation. Altogether, these data highlight S-acylation and lipid exchange at the ER-Golgi membrane contact sites as major regulators of anthrax toxin entry in human cells.

Lausanne: EPFL

2024

p. 157.

DOI : 10.5075/epfl-thesis-10352

Serial Dependence in Human Visual Perception and Decision-Making

G. Ceylan / Director(s) : M. Herzog; D. Pascucci 

Decisions about a current visual stimulus are systematically biased by recently encountered stimuli, a phenomenon known as serial dependence. In human vision, for instance, we tend to report the features of current images as more similar — i.e., an attractive bias — or more different — i.e., a repulsive bias — to those seen a few seconds earlier. While the phenomenology is clear-cut, the nature and underlying mechanisms have continued to be hotly debated for decades. In this thesis, I first provide an extensive review of the main research paradigms, the key factors determining the two opposite biases, and the theories about the underlying mechanisms of serial dependence. The review also focuses on the challenge of establishing a relationship between serial dependence and the concept of object continuity, specifically whether serial dependence assists in maintaining the perceptual continuity of visual features and objects. Second, I investigate whether serial dependence selectively applies to low-level visual features and objects, and whether it integrates past and present information to form a more accurate perception by reducing current uncertainty, as suggested by Bayesian accounts. My findings reveal that serial dependence does neither selectively apply to low-level features nor to objects. Moreover, I demonstrate that the integration of past and present information does not facilitate perception by reducing current uncertainty. Third, I further examine the role of the number of intervening stimuli and task relevance, in addition to the time interval between current and past stimuli, which has often been considered a criterion for serial dependence. The findings here indicate that serial dependence is modulated by an interplay of time, the number of stimuli, and task relevance, suggesting that no single criterion or general temporal tuning can independently define serial dependence. Last, I explore the format of history in serial dependence — what propagates from the past to the present — to determine whether it is the mere history of visual stimuli or the history of internal representations that is integrated. My findings support the latter, demonstrating that serial dependence arises from internal representations, wherein diverse visual features are condensed into the essential formats required by a given task. Taken together, serial dependence is an intriguing yet complex phenomenon. The research I present in this thesis highlights its influence on visual information processing at various stages and its simultaneous modulation by multiple factors during a task, resisting simplification into a single criterion.

Lausanne: EPFL

2024

p. 185.

DOI : 10.5075/epfl-thesis-10327

Data-Driven Methods for Controller Design in Atomic Force Microscopy

N. Asmari Saadabad / Director(s) : G. Fantner; A. Karimi 

Lausanne: EPFL

2024

p. 180.

DOI : 10.5075/epfl-thesis-10016

Aesthetics of Extinction, Aesthetics of Conservation: the Chilean Pavilion at the 59th Venice Art Biennale

A. Thiermann 

Harvard Design Magazine

2023-09-01

Vol. F/W 23 , num. 51.

Quantum-mechanical effects in photoluminescence from thin crystalline gold films

A. R. Bowman; A. Rodríguez Echarri; F. Kiani Shahvandi; F. Iyikanat; T. Tsoulos et al. 

Luminescence constitutes a unique source of insight into hot carrier processes in metals, including those in plasmonic nanostructures used for sensing and energy applications. However, being weak in nature, metal luminescence remains poorly understood, its microscopic origin strongly debated, and its potential for unraveling nanoscale carrier dynamics largely unexploited. Here, we reveal quantum-mechanical effects in the luminescence emanating from thin monocrystalline gold flakes. Specifically, we present experimental evidence, supported by first-principles simulations, to demonstrate its photoluminescence origin (i.e., radiative emission from electron/hole recombination) when exciting in the interband regime. Our model allows us to identify changes to the measured gold luminescence due to quantum-mechanical effects as the gold film thickness is reduced. Excitingly, such effects are observable in the luminescence signal from flakes up to 40 nm in thickness, associated with the out-of-plane discreteness of the electronic band structure near the Fermi level. We qualitatively reproduce the observations with first-principles modeling, thus establishing a unified description of luminescence in gold monocrystalline flakes and enabling its widespread application as a probe of carrier dynamics and light-matter interactions in this material. Our study paves the way for future explorations of hot carriers and charge-transfer dynamics in a multitude of material systems.

Light: Science & Applications

2024

Vol. 13 , num. 91.

DOI : 10.1038/s41377-024-01408-2

Quantifying the effects of rainfall temporal variability on landscape evolution processes

T. Lian; N. Peleg; S. Bonetti 

Rainfall characteristics such as intensity, duration, and frequency are key determinants of the hydro-geomorphological response of a catchment. The presence of non-linear and threshold effects makes the relationship between rainfall variability and geomorphological dynamics difficult to quantify. This is particularly relevant under predicted exacerbated erosion induced by an intensification of hydroclimatic extremes. In this study, we quantify the effects of changes in rainfall temporal variability on catchment morphology and sediment erosion, transport, and deposition across a broad spectrum of grain size distributions and climatic conditions. To this purpose, multiple rainfall realizations are simulated using a numerical rainfall generator, while geomorphic response and soil erosion dynamics are assessed through a landscape evolution model (CAESAR-Lisflood). Virtual catchments are used for the numerical experiments and simulations are conducted over centennial time scales. Simulation results show that higher rainfall temporal variability increases net sediment discharge, domain erosion and deposition volumes, and secondary channel development. Particularly, dry regions respond more actively to rainfall variations and finer grain size configurations amplify the hydro-geomorphological response. We find that changes in erosion rates due to rainfall variations can be expressed as a power-law function of the ratio of rainfall temporal variabilities (quantified here through the Gini index). Results are further supported by long-term observational data and simulations over real catchments. Such quantification of the effects of predicted changes in rainfall patterns on catchment hydro-geomorphic response, as mediated by local soil properties, is crucial to forecasting modifications in sediment dynamics due to climate change.

EGU 2024, Viena, April 14–19, 2024.

Towards a metabolic theory of catchments: scaling of water and carbon fluxes with size

F. Bassani; S. Fatichi; S. Bonetti 

Allometric scaling relations are widely used to link biological processes in nature. They are typically expressed as power laws, postulating that the metabolic rate of an organism scales as its mass to the power of an allometric exponent, which ranges between 2/3 and 3/4. Several studies have shown that such scaling laws hold also for natural ecosystems, including individual trees and forests, riverine metabolism, and river network organization. Here, we focus on allometric relations at watershed scale to investigate “catchment metabolism”, defined as the set of ecohydrological and biogeochemical processes through which the catchment maintains its structure and reacts to the environment. By revising existing plant size-density relationships and integrating them across large-scale domains, we show that the ecohydrological fluxes (representative of metabolic rates of a large and diverse vegetation assemblage) occurring at the catchment scale are invariant with respect to its average above-ground biomass, while they scale linearly with the basin size. We verify our theory with hyper-resolution ecohydrological simulations across the European Alps, which represent an ideal case study due to the large elevation gradient affecting the availability of energy and water resources. Deviations from the isometric scaling are observed and ascribable to energy limitations at high elevations. Remote sensing data from semiarid and tropical basins are also used to show that the observed scaling of water and carbon fluxes with size holds across a broad spectrum of climatic conditions.

EGU General Assembly 2024, Vienna, Austria, April 14-19, 2024.

Biohybrid Superorganisms—On the Design of a Robotic System for Thermal Interactions With Honeybee Colonies

R. Barmak; D. N. Hofstadler; M. Stefanec; L. Piotet; R. Cherfan et al. 

Social insects, such as ants, termites, and honeybees, have evolved sophisticated societies where collaboration and division of labor enhance survival of the whole colony, and are thus considered “superorganisms”. Historically, studying behaviors involving large groups under natural conditions posed significant challenges, often leading to experiments with a limited number of organisms under artificial laboratory conditions that incompletely reflected the animals’ natural habitat. A promising approach to exploring animal behaviors, beyond observation, is using robotics that produce stimuli to interact with the animals. However, their application has predominantly been constrained to small groups in laboratory conditions. Here we present the design choices and development of a biocompatible robotic system intended to integrate with complete honeybee colonies in the field, enabling exploration of their collective thermoregulatory behaviors via arrays of thermal sensors and actuators. We tested the system’s ability to capture the spatiotemporal signatures of two key collective behaviors. A 121-day observation revealed thermoregulation activity of the broodnest area during the foraging season, followed by clustering behavior during winter. Then we demonstrated the system’s ability to influence the colony by guiding a cluster of bees along an unnatural trajectory, via localized thermal stimuli emitted by two robotic frames. These results showcase a system with the capability to experimentally modulate honeybee colonies from within, as well as to unobtrusively observe their dynamics over extended periods. Such biohybrid systems uniting complete societies of thousands of animals and interactive robots can be used to confirm or challenge the existing understanding of complex animal collectives.

IEEE Access

2024

Vol. 12 , p. 50849-50871.

DOI : 10.1109/ACCESS.2024.3385658

Dataset to accompany publication “Quantum-mechanical effects in photoluminescence from thin crystalline gold films”

A. R. Bowman; Á. Rodríguez Echarri; F. Kiani Shahvandi; F. Iyikanat; T. Tsoulos et al. 

This dataset accompanies the publication “Quantum-mechanical effects in photoluminescence from thin crystalline gold films” published in Light: Science & Applications (https://doi.org/10.1038/s41377-024-01408-2). The data can be used to reproduce plots 1-4 in the main text and all plots with data in the supporting information. This data was generated through a combination of raman spectroscopy, microscale absorption meaurements and density functional theory modelling. All files are in excel spreadsheets and easily readable, except compressed files which have a readme file in the appropriate section. The abstract for the associated paper is as follows: Luminescence constitutes a unique source of insight into hot carrier processes in metals, including those in plasmonic nanostructures used for sensing and energy applications. However, being weak in nature, metal luminescence remains poorly understood, its microscopic origin strongly debated, and its potential for unravelling nanoscale carrier dynamics largely unexploited. Here, we reveal quantum-mechanical effects emanating in the luminescence from thin monocrystalline gold flakes. Specifically, we present experimental evidence, supported by first-principles simulations, to demonstrate its photoluminescence origin (i.e., radiative emission from electron/hole recombination) when exciting in the interband regime. Our model allows us to identify changes to the measured gold luminescence due to quantum-mechanical effects as the gold film thickness is reduced. Excitingly, such effects are observable in the luminescence signal from flakes up to 40 nm in thickness, associated with the out-of-plane discreteness of the electronic band structure near the Fermi level. We qualitatively reproduce the observations with first-principles modelling, thus establishing a unified description of luminescence in gold monocrystalline flakes and enabling its widespread application as a probe of carrier dynamics and light-matter interactions in this material. Our study paves the way for future explorations of hot carriers and charge-transfer dynamics in a multitude of material systems. 

2024

Impact of CO2-rich seawater injection on the flow properties of basalts

E. Stavropoulou; C. Griner; L. Laloui 

Permanent CO storage in basalts through mineralisation offers a promising solution for reducing carbon emissions and mitigating climate change. This study focuses on the impact of potential mineralisation on the flow properties of the basaltic material. Fluid flow evolution before and after exposure to CO dissolved in seawater is measured in terms of hydraulic conductivity and permeability under field-like conditions over 1 to 3.5 months. Permeability reduction of up to one order of magnitude suggests that porosity decreases due to mineral precipitation after CO exposure. X-ray tomography measurements of the tested cores reveal a maximum porosity decrease of 1.5% at the given resolution (50 μm/px). To better understand eventual modifications of the connected pore network after mineralisation, fluid flow simulations are performed on the 3D pore network of the material that is reconstructed directly from the acquired x-ray images. A double porosity is proposed: macro-porosity as visible from the tomographies (pores >50 μm) and micro-porosity (pores <50 μm). To reproduce the post-CO exposure flow, reduction of macro-porosity is not enough. Instead, a decrease of the micro-pores is necessary by up to 43%. The experimental and numerical results suggest that potential mineralisation can substantially modify the pore space of the intact basaltic material and consequently impact storage efficiency if flow is not preserved.

International Journal of Greenhouse Gas Control

2024-04-19

Vol. 134 , p. 104128.

DOI : 10.1016/j.ijggc.2024.104128

Material Reform: Building for a Post-Carbon Future

D. Amica; C. Malterre-Barthes; J. Gough; S. S. Islam; P. Gormley et al. 

This acclaimed and bestselling book by design and research practice Material Cultures brings together a series of short, incisive essays on the cultures, systems, and infrastructures that shape the architectural industry and the destructive ecologies it fosters. Texts centred around key topics including resources, maintenance, agriculture, land use, and value are interwoven with a visual essay capturing the impact of industrialisation on landscapes at different scales. The building practices dominating contemporary architecture are rooted in the exploitation of people and the degradation of our landscapes. Here, Paloma Gormley, Summer Islam, and George Massoud explore how this has come about and how alternative systems, with holistic approaches to the built environment, might be formulated. Through text and visuals, concepts and practice, Material Reform explores how developing a direct relationship with materials can help us find new languages with the potential to supersede those we have inherited from a narrow lineage of authors. These discursive threads come together to form a vital sourcebook for rethinking our relationships to materials, land, and development, in all their crucial intersections. This new edition has been updated for 2024.

London: Mack, 2023-01-01.

ISBN : 978-1-913620-81-3

Architecture of a decentralised decision support system for futuristic beehives

V. Komasilovs; R. Mills; A. Kviesis; F. Mondada; A. Zacepins 

Honeybees are essential to human society, providing pollination services globally as well as producing honey and other valuable products. Effective management of apiaries should not only rely on beekeeper knowledge and skill, but also incorporate new information technologies. The options to identify, predict and prevent beekeeping problems are becoming more affordable and applicable. The interdisciplinary Horizon 2020 project HIVEOPOLIS focuses on developing a new approach in beekeeping, by creating novel mechatronic beehives and implementing new bio-hybrid ideas. These intelligent beehives aim to help honeybees to cope with adverse environmental factors and increase the survival rate of the bee colonies. This paper focuses on the software architecture design for these intelligent beehives, providing infrastructure for data management and decision support system operation. The presented infrastructure is suitable for highly dynamic and diverse environments where a multitude of components interact and exchange information across technology domains (embedded, cloud, UIs) in a reliable and secure way. Besides user support, the decision support system built upon this infrastructure enables closed-loop automated decision making and control.

Biosystems Engineering

2024

Vol. 240 , p. 56-61.

DOI : 10.1016/j.biosystemseng.2024.02.017

Comment une situation d’investigation policière fait évoluer les conceptions d’élèves de troisième sur l’ADN

R. Saavedra; P. Marzin-janvier; I. Girault 

The work presented focuses on the analysis of a police investigation implemented in the computing environment SCY-Lab. The prime objective is to check if the implementation of the situation helps pupils change their conceptions concerning the DNA molecule on the one hand and pupils’ representations of the biological analysis of a crime scene that refers to the professional practices of the technician in scientific analysis. The second objective is to examine the problem-solving processes pupils are faced with. The results of a test with four volunteer pupils at the end of grade 9 show that they are more familiar with the structural aspects of DNA (sequence of nucleotides and double helix) and with its biological level (in the cell and in the core). As far as the understanding of the techniques of biological analysis used as part of a police investigation is concerned, the findings reveal that pupils still do not have a clear vision of what the term “DNA profile” means, even if they have understood how genetic profiles can be obtained. The pre-experimentation was useful to improve the resources, instructions and activities performed on the platform. They will then be given to a greater number of pupils.

RDST

2013

num. 7, p. 77-106.

DOI : 10.4000/rdst.698

TSLAM: a tag-based object-centered monocular navigation system for augmented manual woodworking.

S. Andrea; H-B. Yang; G. Julien; W. Yves 

TimberSLAM (TSLAM) is an object-centered, tag-based visual self-localization and mapping (SLAM) system for monocular RGB cameras. It was specifically developed to support a robust and augmented reality pipeline for close-range, noisy, and cluttered fabrication sequences that involve woodworking operations, such as cutting, drilling, sawing, and screwing with multiple tools and end-effectors. By leveraging and combining multiple open-source projects, we obtain a functional pipeline that can map, three-dimensionally reconstruct, and finally provide a robust camera pose stream during fabrication time to overlay an execution model with its digital-twin model, even under close-range views, dynamic environments, and heavy scene obstructions. To benchmark the proposed navigation system under real fabrication scenarios, we produce a data set of 1344 closeups of different woodworking operations with multiple tools, tool heads, and varying parameters (e.g., tag layout and density). The evaluation campaign indicates that TSLAM is satisfyingly capable of detecting the camera’s millimeter position and subangular rotation during the majority of fabrication sequences. The reconstruction algorithm’s accuracy is also gauged and yields results that demonstrate its capacity to acquire shapes of timber beams with up to two preexisting joints. We have made the entire source code, evaluation pipeline, and data set open to the public for reproducibility and the benefit of the community.

Construction Robotics

2024-04-16

Vol. 8 , num. 4.

DOI : 10.1007/s41693-024-00118-w

Water weakening and the compressive brittle strength of carbonates: Influence of fracture toughness and static friction

C. Noël; B. Fryer; P. Baud; M. Violay 

Water is ubiquitous within the pore space of rocks and has been shown to affect their physical and mechanical behaviour. Indeed, water can act on the rock strength via mechanical (i.e., reducing the effective stresses) or chemical effects (e.g., mineral dissolution, mineral alteration, subcritical crack growth, etc.). As rock macroscopic strength is controlled by both fracture toughness and friction at the grain-scale, these parameters should also be affected in presence of water. While some recent studies have measured the effect of water on both fracture toughness and frictional parameters to constrain the water weakening of porous rock compressive strength, the physical parameters, or rock characteristics, that influence this weakening are as of yet unclear. Here, we report a series of laboratory experiments in order to determine the influence of a water-saturated, as opposed to dry, environment on five limestones’ strengths. The uniaxial compressive strength, the mode-I fracture toughness and the static friction parameters are of interest. The experiments show that, for the tested limestones, water-saturated conditions provoke a reduction of the uniaxial compressive strength by up to 53 %. This reduction is accompanied by a reduction of the mode-I fracture toughness by up to 34 % and of the static friction by up to 16 %. Even though the water weakening of the uniaxial compressive strength is not influenced by the sample porosity, the mode-I fracture toughness reduction in the presence of water is accentuated for high-porosity limestones. Additionally, low porosity limestones appear to promote higher static friction reductions in water-saturated environments.

International Journal of Rock Mechanics and Mining Sciences

2024

Vol. 177 , p. 105736.

DOI : 10.1016/j.ijrmms.2024.105736

Integration of the Pilatus3 detector for soft X-ray diagnostics on TCV

S. Masillo 

25th Topical Conference on High Temperature Plasma Diagnostics HTPD 2024, Asheville, North Carolina, 21 – 25 April 2024.

Siloxide tripodal ligands as a scaffold for stabilizing lanthanides in the +4 oxidation state

M. C. G. Tricoire; F-C. Hsueh; M. R. Keener; T. Rajeshkumar; R. Scopelliti et al. 

Synthetic strategies to isolate molecular complexes of lanthanides, other than cerium, in the +4 oxidation state remain elusive, with only four complexes of Tb(iv) isolated so far. Herein, we present a new approach for the stabilization of Tb(iv) using a siloxide tripodal trianionic ligand, which allows the control of unwanted ligand rearrangements, while tuning the Ln(iii)/Ln(iv) redox-couple. The Ln(iii) complexes, [LnIII((OSiPh2Ar)3-arene)(THF)3] (1-LnPh) and [K(toluene){LnIII((OSiPh2Ar)3-arene)(OSiPh3)}] (2-LnPh) (Ln = Ce, Tb, Pr), of the (HOSiPh2Ar)3-arene ligand were prepared. The redox properties of these complexes were compared to those of the Ln(iii) analogue complexes, [LnIII((OSi(OtBu)2Ar)3-arene)(THF)] (1-LnOtBu) and [K(THF)6][LnIII((OSi(OtBu)2Ar)3-arene)(OSiPh3)] (2-LnOtBu) (Ln = Ce, Tb), of the less electron-donating siloxide trianionic ligand, (HOSi(OtBu)2Ar)3-arene. The cyclic voltammetry studies showed a cathodic shift in the oxidation potential for the cerium and terbium complexes of the more electron-donating phenyl substituted scaffold (1-LnPh) compared to those of the tert-butoxy (1-LnOtBu) ligand. Furthermore, the addition of the -OSiPh3 ligand further shifts the potential cathodically, making the Ln(iv) ion even more accessible. Notably, the Ce(iv) complexes, [CeIV((OSi(OtBu)2Ar)3-arene)(OSiPh3)] (3-CeOtBu) and [CeIV((OSiPh2Ar)3-arene)(OSiPh3)(THF)2] (3-CePh), were prepared by chemical oxidation of the Ce(iii) analogues. Chemical oxidation of the Tb(iii) and Pr(iii) complexes (2-LnPh) was also possible, in which the Tb(iv) complex, [TbIV((OSiPh2Ar)3-arene)(OSiPh3)(MeCN)2] (3-TbPh), was isolated and crystallographically characterized, yielding the first example of a Tb(iv) supported by a polydentate ligand. The versatility and robustness of these siloxide arene-anchored platforms will allow further development in the isolation of more oxidizing Ln(iv) ions, widening the breadth of high-valent Ln chemistry.|Robust arene-anchored polydentate siloxide ligands allow to control unwanted ligand rearrangements for the isolation of Tb(iv) complexes thus enabling the use of the Tb(iii)/Tb(iv) couple for the separation of Tb from the neighboring Dy ion.

Chemical Science

2024-04-02

DOI : 10.1039/d4sc00051j

High-Permittivity Polysiloxanes for Bright, Stretchable Electroluminescent Devices

J. von Szczepanski; J. Wolf; W-H. Hu; R. Schneider; P. M. Danner et al. 

Stretchable alternating current electroluminescent (ACEL) devices have a bright future in wearable electronics and soft robotics. Still, their market application is hindered by high operating voltages. The voltage can be reduced by increasing the relative permittivity of the dielectric elastomer in the emissive layer. Here, a fluorine-free high-permittivity silicone elastomer functionalized with cyanopropyl side groups, specially designed for application in stretchable ACEL devices, is introduced. The polar silicone elastomer exhibits excellent mechanical properties and a dielectric permittivity four times higher than commercial PDMS. Light-emitting devices based on the polar elastomer reach 7.5 times higher maximum luminance at the same electric field than PDMS-based devices and turn on at a 50% lower electric field. Besides, the polar elastomer-based devices perform better than all materials tested in literature in achieving high luminance at low electric fields. Stretchable ACEL devices are built from the polar elastomer which shows bright and uniform light emission and can be operated up to 50% strain. The high-permittivity silicones are promising materials for stretchable ACEL devices and can help their breakthrough to market application by overcoming the drawback of high operating voltages.|A high-permittivity, nitrile-functional silicone elastomer for application in stretchable electroluminescent devices is introduced. The polar elastomer emissive layer reaches significantly higher luminance and needs lower operating voltages than an emissive layer based on commercially available PDMS. Besides, the polar elastomer can be used to build bright and stretchable devices in a simple bottom-up procedure. image

Advanced Optical Materials

2024-04-11

DOI : 10.1002/adom.202400132

An extension of the stochastic sewing lemma and applications to fractional stochastic calculus

T. Matsuda; N. Perkowski 

We give an extension of Le’s stochastic sewing lemma. The stochastic sewing lemma proves convergence in $L_m$ of Riemann type sums $\sum _{[s,t] \in \pi } A_{s,t}$ for an adapted two-parameter stochastic process A, under certain conditions on the moments of $A_{s,t}$ and of conditional expectations of $A_{s,t}$ given $\mathcal F_s$ . Our extension replaces the conditional expectation given $\mathcal F_s$ by that given $\mathcal F_v$ for $v

Forum Of Mathematics Sigma

2024-04-11

Vol. 12 , p. e52.

DOI : 10.1017/fms.2024.32

A bridge between trust and control: computational workflows meet automated battery cycling

P. Kraus; E. Bainglass; F. F. Ramirez; E. Svaluto-Ferro; L. Ercole et al. 

Compliance with good research data management practices means trust in the integrity of the data, and it is achievable by full control of the data gathering process. In this work, we demonstrate tooling which bridges these two aspects, and illustrate its use in a case study of automated battery cycling. We successfully interface off-the-shelf battery cycling hardware with the computational workflow management software AiiDA, allowing us to control experiments, while ensuring trust in the data by tracking its provenance. We design user interfaces compatible with this tooling, which span the inventory, experiment design, and result analysis stages. Other features, including monitoring of workflows and import of externally generated and legacy data are also implemented. Finally, the full software stack required for this work is made available in a set of open-source packages.

Journal Of Materials Chemistry A

2024-04-03

DOI : 10.1039/d3ta06889g

Capsizing due to friction-induced twist in the failure of stopper knots

P. Johanns; P. M. Reis 

We investigate the failure mechanism of stopper knots, with a particular focus on the figure -8 knot as a representative example. Stopper knots are widely used in climbing, sailing, racket stringing, and sewing to maintain tension in ropes, strings, or threads while preventing them from passing through an orifice. Combining high -precision model experiments and Finite Element Analyses, we systematically explore the influence of frictional interactions and their role in the build-up of mechanical twist. Our findings reveal that the failure of stopper knots via capsizing, which involves configurational alterations of the filament, is primarily due to friction -induced twisting when loading the knot against a restraining plate containing a clearance hole. Our study offers a comprehensive understanding of the mechanical behavior of stopper knots under diverse loading conditions, thereby providing crucial insights for their reliable application across various domains.

Extreme Mechanics Letters

2024-02-19

Vol. 68 , p. 102134.

DOI : 10.1016/j.eml.2024.102134

A CTCF-dependent mechanism underlies the Hox timer relation to a segmented body plan

H. Rekaik; D. Duboule 

During gastrulation, Hox genes are activated in a timesequence that follows the order of the genes along their clusters. This property, which is observed in all animals that develop following a progressive rostral-to-caudal morphogenesis, is associated with changes in the chromatin structure and epigenetic profiles of Hox clusters, suggesting a process at least partly based on sequential gene accessibility. Here, we discuss recent work on this issue, as well as a possible mechanism based on the surprising conservation in both the distribution and orientation of CTCF sites inside vertebrate Hox clusters.

Current Opinion In Genetics & Development

2024-04-01

Vol. 85 , p. 102160.

DOI : 10.1016/j.gde.2024.102160

Gradient High-Q Dielectric Metasurfaces for Broadband Sensing and Control of Vibrational Light-Matter Coupling

F. U. Richter; I. Sinev; S. Zhou; A. Leitis; S-H. Oh et al. 

Surface-enhanced infrared absorption spectroscopy (SEIRA) has emerged as a powerful technique for ultrasensitive chemical-specific analysis. SEIRA can be realized by employing metasurfaces that can enhance light-matter interactions in the spectral bands of molecular vibrations. Increasing sample complexity emphasizes the need for metasurfaces that can operate simultaneously at different spectral bands, both accessing rich spectral information over a broad band, and resolving subtle differences in the absorption fingerprints through narrow-band resonances. Here, a novel concept of resonance-gradient metasurfaces is introduced, where the required spectral selectivity is achieved via local high-quality-factor (high-Q) resonances, while the continuous coverage of a broad band is enabled by the gradual adjustment of the unit-cell dimensions along the planar structure. The highly tailorable design of the gradient metasurfaces provides flexibility for shaping the spectral sampling density to match the relevant bands of target analytes while keeping a compact device footprint. The versatility of the gradient metasurfaces is demonstrated through several sensing scenarios, including polymer mixture deconvolution, detecting a multistep bioassay, and identification of the onset of vibrational strong coupling regime. The proposed gradient-resonance platform significantly contributes to the rapidly evolving landscape of nonlocal metasurfaces, enabling applications in molecular detection and analysis of fundamental light-matter interaction phenomena.

Advanced Materials

2024-04-09

DOI : 10.1002/adma.202314279

SOMOphilic alkyne vs radical-polar crossover approaches: The full story of the azido-alkynylation of alkenes

J. A. Borrel; J. Waser 

We report the detailed background for the discovery and development of the synthesis of homopropargylic azides by the azidoalkynylation of alkenes. Initially, a strategy involving SOMOphilic alkynes was adopted, but only resulted in a 29% yield of the desired product. By switching to a radical-polar crossover approach and after optimization, a high yield (72%) of the homopropargylic azide was reached. Full insights are given about the factors that were essential for the success of the optimization process.

Beilstein Journal Of Organic Chemistry

2024-04-03

Vol. 20 , p. 701-713.

DOI : 10.3762/bjoc.20.64

Dielectric elastomer actuator-based valveless pump as Fontan failure assist device: introduction and preliminary study

A. Benouhiba; A. M. Walter; S. E. Jahren; T. G. Martinez; F. Clavica et al. 

OBJECTIVES: Fontan failure refers to a condition in which the Fontan circulation, a surgical procedure used to treat certain congenital heart defects, becomes insufficient, leading to compromised cardiac function and potential complications. This in vitro study therefore investigates the feasibility of bladeless impedance-driven cavopulmonary assist device via dielectric elastomer actuator (DEA) as a means to address Fontan failure. METHODS: A cavopulmonary assist device, constructed using DEA technologies and employing the impedance pump concept, is subjected to in vitro testing within a closed-loop setup. This study aims to assess the device’s functionality and performance under controlled conditions, providing valuable insights into its potential application as a cavopulmonary assistive technology. RESULTS: The DEA-based pump, measuring 50 mm in length and 30 mm in diameter, is capable of achieving substantial flow rates within a closed-loop setup, reaching up to 1.20 l/min at an activation frequency of 4 Hz. It also provides a broad range of working internal pressures (<10 to >20 mmHg). Lastly, the properties of the flow (direction, magnitude, etc.) can be controlled by adjusting the input signal parameters (frequency, amplitude, etc.). CONCLUSIONS: In summary, the results suggest that the valveless impedance-driven pump utilizing DEA technology is promising in the context of cavopulmonary assist devices. Further research and development in this area may lead to innovative and potentially more effective solutions for assisting the right heart, ultimately benefiting patients with heart-related health issues overall, with a particular focus on those experiencing Fontan failure.

Interdisciplinary Cardiovascular And Thoracic Surgery

2024-03-29

Vol. 38 , num. 4, p. ivae041.

DOI : 10.1093/icvts/ivae041

Tree diversity reduces variability in sapling survival under drought

H. Blondeel; J. Guillemot; N. Martin-StPaul; A. Druel; S. Bilodeau-Gauthier et al. 

Enhancing tree diversity may be important to fostering resilience to drought-related climate extremes. So far, little attention has been given to whether tree diversity can increase the survival of trees and reduce its variability in young forest plantations. We conducted an analysis of seedling and sapling survival from 34 globally distributed tree diversity experiments (363,167 trees, 168 species, 3744 plots, 7 biomes) to answer two questions: (1) Do drought and tree diversity alter the mean and variability in plot-level tree survival, with higher and less variable survival as diversity increases? and (2) Do species that survive poorly in monocultures survive better in mixtures and do specific functional traits explain monoculture survival? Tree species richness reduced variability in plot-level survival, while functional diversity (Rao’s Q entropy) increased survival and also reduced its variability. Importantly, the reduction in survival variability became stronger as drought severity increased. We found that species with low survival in monocultures survived comparatively better in mixtures when under drought. Species survival in monoculture was positively associated with drought resistance (indicated by hydraulic traits such as turgor loss point), plant height and conservative resource-acquisition traits (e.g. low leaf nitrogen concentration and small leaf size). Synthesis. The findings highlight: (1) The effectiveness of tree diversity for decreasing the variability in seedling and sapling survival under drought; and (2) the importance of drought resistance and associated traits to explain altered tree species survival in response to tree diversity and drought. From an ecological perspective, we recommend mixing be considered to stabilize tree survival, particularly when functionally diverse forests with drought-resistant species also promote high survival of drought-sensitive species.|Rising climate extremes, such as drought, can cause major uncertainty in the survival of young trees. Tree diversity can reduce survival variability and stabilize tree survival. Functionally diverse communities with drought-tolerant species can promote the survival of drought-sensitive species.image

Journal Of Ecology

2024-04-08

DOI : 10.1111/1365-2745.14294

Probing structural and dynamic properties of MAPbCl3 hybrid perovskite using Mn2+ EPR

G. Usevicius; J. Turcak; Y. Zhang; A. Eggeling; Z. Einoryte et al. 

Hybrid methylammonium (MA) lead halide perovskites have emerged as materials exhibiting excellent photovoltaic performance related to their rich structural and dynamic properties. Here, we use multifrequency (X-, Q-, and W-band) electron paramagnetic resonance (EPR) spectroscopy of Mn2+ impurities in MAPbCl(3) to probe the structural and dynamic properties of both the organic and inorganic sublattices of this compound. The temperature dependent continuous-wave (CW) EPR experiments reveal a sudden change of the Mn2+ spin Hamiltonian parameters at the phase transition to the ordered orthorhombic phase indicating its first-order character and significant slowing down of the MA cation reorientation. Pulsed EPR experiments are employed to measure the temperature dependences of the spin-lattice relaxation T-1 and decoherence T-2 times of the Mn2+ ions in the orthorhombic phase of MAPbCl(3) revealing a coupling between the spin center and vibrations of the inorganic framework. Low-temperature electron spin echo envelope modulation (ESEEM) experiments of the protonated and deuterated MAPbCl(3) analogues show the presence of quantum rotational tunneling of the ammonium groups, allowing to accurately probe their rotational energy landscape.

Dalton Transactions

2024-04-03

DOI : 10.1039/d4dt00116h

Benchmarking machine-readable vectors of chemical reactions on computed activation barriers

P. E. Van Gerwen; K. R. Briling; Y. Calvino Alonso; M. Franke; C. Corminboeuf 

In recent years, there has been a surge of interest in predicting computed activation barriers, to enable the acceleration of the automated exploration of reaction networks. Consequently, various predictive approaches have emerged, ranging from graph-based models to methods based on the three-dimensional structure of reactants and products. In tandem, many representations have been developed to predict experimental targets, which may hold promise for barrier prediction as well. Here, we bring together all of these efforts and benchmark various methods (Morgan fingerprints, the DRFP, the CGR representation-based Chemprop, SLATMd, B2Rl2, EquiReact and language model BERT + RXNFP) for the prediction of computed activation barriers on three diverse datasets.|We benchmark various methods for the prediction of computed activation barriers on three diverse datasets.

Digital Discovery

2024-03-07

DOI : 10.1039/d3dd00175j

Quantum radio astronomy: Data encodings and quantum image processing

T. Brunet; E. E. Tolley; S. Corda; R. Ilic; P. C. Broekema et al. 

We explore applications of quantum computing for radio interferometry and astronomy using recent developments in quantum image processing. We evaluate the suitability of different quantum image representations using a toy quantum computing image reconstruction pipeline, and compare its performance to the classical computing counterpart. For identifying and locating bright radio sources, quantum computing can offer an exponential speedup over classical algorithms, even when accounting for data encoding cost and repeated circuit evaluations. We also propose a novel variational quantum computing algorithm for self -calibration of interferometer visibilities, and discuss future developments and research that would be necessary to make quantum computing for radio astronomy a reality.

Astronomy And Computing

2024-02-28

Vol. 47 , p. 100796.

DOI : 10.1016/j.ascom.2024.100796

Comprehensive Memory Safety Validation: An Alternative Approach to Memory Safety

K. Huang; M. Payer; Z. Qian; J. Sampson; G. Tan et al. 

Comprehensive memory safety validation identifies the memory objects whose accesses provably comply with all classes of memory safety, protecting them from memory errors elsewhere at low overhead. We assess the breadth and depth of comprehensive memory safety validation.

Ieee Security & Privacy

2024-04-04

DOI : 10.1109/MSEC.2024.3379947

A Method of Moments Estimator for Interacting Particle Systems and their Mean Field Limit

G. A. Pavliotis; A. Zanoni 

We study the problem of learning unknown parameters in stochastic interacting particle systems with polynomial drift, interaction, and diffusion functions from the path of one single particle in the system. Our estimator is obtained by solving a linear system which is constructed by imposing appropriate conditions on the moments of the invariant distribution of the mean field limit and on the quadratic variation of the process. Our approach is easy to implement as it only requires the approximation of the moments via the ergodic theorem and the solution of a low-dimensional linear system. Moreover, we prove that our estimator is asymptotically unbiased in the limits of infinite data and infinite number of particles (mean field limit). In addition, we present several numerical experiments that validate the theoretical analysis and show the effectiveness of our methodology to accurately infer parameters in systems of interacting particles.

Siam-Asa Journal On Uncertainty Quantification

2024-01-01

Vol. 12 , num. 2, p. 262-288.

DOI : 10.1137/22M153848X

A setup for hard x-ray time-resolved resonant inelastic x-ray scattering at SwissFEL

H-Y. Chen; R. B. Versteeg; R. Mankowsky; M. Puppin; L. M. Diniz Leroy et al. 

We present a new setup for resonant inelastic hard x-ray scattering at the Bernina beamline of SwissFEL with energy, momentum, and temporal resolution. The compact R = 0.5 m Johann-type spectrometer can be equipped with up to three crystal analyzers and allows efficient collection of RIXS spectra. Optical pumping for time-resolved studies can be realized with a broad span of optical wavelengths. We demonstrate the performance of the setup at an overall similar to 180 meV resolution in a study of ground-state and photoexcited (at 400 nm) honeycomb 5d iridate alpha-Li2IrO3. Steady-state RIXS spectra at the iridium L-3-edge (11.214 keV) have been collected and are in very good agreement with data collected at synchrotrons. The time-resolved RIXS transients exhibit changes in the energy loss region <2 eV, whose features mostly result from the hopping nature of 5d electrons in the honeycomb lattice. These changes are ascribed to modulations of the Ir-to-Ir inter-site transition scattering efficiency, which we associate to a transient screening of the on-site Coulomb interaction. (c) 2024 Author(s). All article content, except where otherwise noted, is licensed under a Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/)

Structural Dynamics-Us

2024-03-01

Vol. 11 , num. 2, p. 024308.

DOI : 10.1063/4.0000236

An aircraft assembly process formalism and verification method based on semantic modeling and MBSE

X. Zheng; X. Hu; J. Lu; R. Arista; J. Lentes et al. 

The aircraft assembly system is highly complex involving different stakeholders from multiple domains. The design of such a system requires comprehensive consideration of various industrial scenarios aiming to optimize key performance indicators. Traditional design methods heavily rely on domain expert knowledge using documents to define assembly solutions which are later verified through simulations. However, these document -centric approaches cannot provide graphical notations for engineers to efficiently understand the entire assembly process. Moreover, it is difficult to analyze the performance of the designed assembly processes using simulations since the simulation models have to be developed based on the documents manually rather than be generated automatically from the design models. In this paper, a semantic -driven approach is proposed to support aircraft assembly process formalism and performance analysis. First, meta -models of aircraft assembly processes are developed based on SysML and discrete -event simulation models using a semantic modeling language named KARMA. Then an application ontology is defined for generating semantic models from KARMA architecture models to capture domain knowledge, system requirements and simulation model information of the aircraft assembly process. A model transformer is developed to transform the KARMA models to discrete -event simulation models based on the application ontology. Then the generated simulation models are executed to obtain the simulation results for verifying the designed assembly process. Finally, the obtained simulation results are used to support decision -making of selecting the optimal aircraft assembly process. A case study is conducted to verify the proposed method.

Advanced Engineering Informatics

2024-02-20

Vol. 60 , p. 102412.

DOI : 10.1016/j.aei.2024.102412

Stellar Metallicities and Gradients in the Isolated, Quenched Low-mass Galaxy Tucana

S. W. Fu; D. R. Weisz; E. Starkenburg; N. Martin; F. J. Mercado et al. 

We measure the metallicities of 374 red giant branch (RGB) stars in the isolated, quenched dwarf galaxy Tucana using Hubble Space Telescope (HST) narrow-band (F395N) Calcium H & K (CaHK) imaging. Our sample is a factor of similar to 7 similar to 7 larger than what is published. Our main findings are: (i) A global metallicity distribution function (MDF) with <[Fe/H]>=-1.55(-0.04)(+0.04) and( sigma)[Fe/H]= =0.54(-0.03)(+)(0.03) (ii) A metallicity gradient of -0.54 +/- 0.07-0.54 +/- 0.07 dex R-e(-1) (-2.1 +/- 0.3- dex kpc(-1)) over the extent of our imaging (similar to 2.5R(e)), which is steeper than literature measurements. Our finding is consistent with predicted gradients from the publicly-available FIRE-2 simulations, in which bursty star formation creates stellar population gradients and dark matter cores; (iii) Tucana’s bifurcated RGB has distinct metallicities: a blue RGB with <[Fe/H]>=-1.78(-0.06)(+0.06)<[Fe/H]>=-1.78(-0.06)(+0.06) and sigma([Fe/H])=0.44(-0.06)(+0.07 )and a red RGB with <[Fe/H]> = -1.08(-0.07)(+0.07 and alpha)[Fe/H] 0.42 +/- 0.06(iv) At fixed stellar mass, Tucana is more MR than MW satellites by similar to 0.4, but its blue RGB is chemically comparable to the satellites. Tucana’s MDF appears consistent with star-forming isolated dwarfs, though MDFs of the latter are not as well-populated; (v) similar to 2 similar to 2% of Tucana’s stars have [Fe/H]<-3[Fe/H]<-3 and 20% [Fe/H]>-1[Fe/H]>-1. We provide a catalog for community spectroscopic follow-up.

Astrophysical Journal

2024-04-01

Vol. 965 , num. 1, p. 36.

DOI : 10.3847/1538-4357/ad25ed

Twisted pair transmission line coil – a flexible, self-decoupled and robust element for 7 T MRI

J. Vliem; Y. Xiao; D. Wenz; L. Xin; W. Teeuwise et al. 

Objective: This study evaluates the performance of a twisted pair transmission line coil as a transceive element for 7 T MRI in terms of physical flexibility, robustness to shape deformations, and interelement decoupling. Methods: Each coil element was created by shaping a twisted pair of wires into a circle. One wire was interrupted at the top, while the other was interrupted at the bottom, and connected to the matching circuit. Electromagnetic simulations were conducted to determine the optimal number of twists per length (in terms of B,+ field efficiency, SAR efficiency, sensitivity to elongation, and interelement decoupling properties) and for investigating the fundamental operational principle of the coil through fields streamline visualisation. A comparison between the twisted pair coil and a conventional loop coil in terms of B,+ fields, maxSAR,0g, and stability of S,, when the coil was deformed was performed. Experimentally measured interelement coupling between individual elements of multichannel arrays was also investigated. Results: Increasing the number of twists per length resulted in a more physically robust coil. Poynting vector streamline visualisation showed that the twisted pair coil concentrated most of the energy in the near field. The twisted pair coil exhibited comparable B,+ fields and improved maxSAR,0g to the conventional coil but demonstrated exceptional stability with respect to coil deformation and a strong self-decoupling nature when placed in an array configuration. Discussion: The findings highlight the robustness of the twisted pair coil, showcasing its stability under shape variations. This coil holds great potential as a flexible RF coil for various imaging applications using multipleelement arrays, benefiting from its inherent decoupling.

Magnetic Resonance Imaging

2024-02-19

Vol. 108 , p. 146-160.

DOI : 10.1016/j.mri.2024.02.007

Equilibria in Network Constrained Energy Markets

G. Como; F. Fagnani; L. Massai 

We study an energy market composed of producers who compete to supply energy to different markets and want to maximize their profits. The energy market is modeled by a graph representing a constrained power network where nodes represent the markets and links are the physical lines with a finite capacity connecting them. Producers play a networked Cournot game on such a network together with a centralized authority, called market maker, that facilitates the trade between geographically separate markets via the constrained power network and aims to maximize a certain welfare function. We first study the existence and uniqueness of Nash equilibria. Then, we prove an important result that links capacity bottlenecks in the power network and the emergence of price differences between different markets that are separated by saturated lines, a phenomenon that is often observed in real power networks.

Ifac Papersonline

2023-01-01

22nd World Congress of the International Federation of Automatic Control (IFAC), Yokohama, JAPAN, JUL 09-14, 2023.

p. 4168-4172

DOI : 10.1016/j.ifacol.2023.10.1760

Minimal regret state estimation of time-varying systems

J-S. Brouillon; F. Dorfler; G. F. Trecate 

Kalman and H-infinity filters, the most popular paradigms for linear state estimation, are designed for very specific specific noise and disturbance patterns, which may not appear in practice. State observers based on the minimization of regret measures are a promising alternative, as they aim to adapt to recognizable patterns in the estimation error. In this paper, we show that the regret minimization problem for finite horizon estimation can be cast into a simple convex optimization problem. For this purpose, we first rewrite linear time-varying system dynamics using a novel system level synthesis parametrization for state estimation, capable of handling both disturbance and measurement noise. We then provide a tractable formulation for the minimization of regret based on semi-definite programming. Both contributions make the minimal regret observer design easily implementable in practice. Finally, numerical experiments show that the computed observer can significantly outperform both H-2 and H-infinity filters.

Ifac Papersonline

2023-01-01

22nd World Congress of the International Federation of Automatic Control (IFAC), Yokohama, JAPAN, JUL 09-14, 2023.

p. 2595-2600

DOI : 10.1016/j.ifacol.2023.10.1345

Follow the Clairvoyant: an Imitation Learning Approach to Optimal Control

A. Martin; L. Furieri; F. Dorfler; J. Lygeros; G. Ferrari-Trecate 

We consider control of dynamical systems through the lens of competitive analysis. Most prior work in this area focuses on minimizing regret, that is, the loss relative to an ideal clairvoyant policy that has noncausal access to past, present, and future disturbances. Motivated by the observation that the optimal cost only provides coarse information about the ideal closed-loop behavior, we instead propose directly minimizing the tracking error relative to the optimal trajectories in hindsight, i. e., imitating the clairvoyant policy. By embracing a system level perspective, we present an efficient optimization-based approach for computing follow-the-clairvoyant (FTC) safe controllers. We prove that these attain minimal regret if no constraints are imposed on the noncausal benchmark. In addition, we present numerical experiments to show that our policy retains the hallmark of competitive algorithms of interpolating between classical H-2 and H-infinity control laws – while consistently outperforming regret minimization methods in constrained scenarios thanks to the superior ability to chase the clairvoyant. Copyright (c) 2023 The Authors.

Ifac Papersonline

2023-01-01

22nd World Congress of the International Federation of Automatic Control (IFAC), Yokohama, JAPAN, JUL 09-14, 2023.

p. 2589-2594

DOI : 10.1016/j.ifacol.2023.10.1344

3D Printing of Double Network Granular Elastomers with Locally Varying Mechanical Properties

E. J. Baur; B. Tiberghien; E. Amstad 

Fast advances in the design of soft actuators and robots demand for new soft materials whose mechanical properties can be changed over short length scales. Elastomers can be formulated as highly stretchable or rather stiff materials and hence, are attractive for these applications. They are most frequently cast such that their composition cannot be changed over short length scales. A method that allows to locally change the composition of elastomers on hundreds of micrometer lengths scales is direct ink writing (DIW). Unfortunately, in the absence of rheomodifiers, most elastomer precursors cannot be printed through DIW. Here, 3D printable double network granular elastomers (DNGEs) whose ultimate tensile strain and stiffness can be varied over an unprecedented range are introduced. The 3D printability of these materials is leveraged to produce an elastomer finger containing rigid bones that are surrounded by a soft skin. Similarly, the rheological properties of the microparticle-based precursors are leveraged to cast elastomer slabs with locally varying stiffnesses that deform and twist in a predefined fashion. These DNGEs are foreseen to open up new avenues in the design of the next generation of smart wearables, strain sensors, prosthesis, soft actuators, and robots.|A novel ink composed of jammed precursor-loaded elastomeric microparticles that can be direct ink written into double network granular elastomers that can attain a wide range of stiffnesses and ultimate tensile strains is presented. Inks with different stiffnesses can be 3D printed into cm-sized structures with locally varying compositions and hence mechanical properties using commercial multinozzle 3D printers. image

Advanced Materials

2024-04-04

DOI : 10.1002/adma.202313189

Dopant-additive synergism enhances perovskite solar modules

B. Ding; Y. Ding; J. Peng; J. Romano-deGea; L. E. K. Frederiksen et al. 

Perovskite solar cells (PSCs) are among the most promising photovoltaic technologies owing to their exceptional optoelectronic properties 1,2 . However, the lower efficiency, poor stability and reproducibility issues of large-area PSCs compared with laboratory-scale PSCs are notable drawbacks that hinder their commercialization 3 . Here we report a synergistic dopant-additive combination strategy using methylammonium chloride (MACl) as the dopant and a Lewis-basic ionic-liquid additive, 1,3-bis(cyanomethyl)imidazolium chloride ([Bcmim]Cl). This strategy effectively inhibits the degradation of the perovskite precursor solution (PPS), suppresses the aggregation of MACl and results in phase-homogeneous and stable perovskite films with high crystallinity and fewer defects. This approach enabled the fabrication of perovskite solar modules (PSMs) that achieved a certified efficiency of 23.30% and ultimately stabilized at 22.97% over a 27.22-cm2 aperture area, marking the highest certified PSM performance. Furthermore, the PSMs showed long-term operational stability, maintaining 94.66% of the initial efficiency after 1,000 h under continuous one-sun illumination at room temperature. The interaction between [Bcmim]Cl and MACl was extensively studied to unravel the mechanism leading to an enhancement of device properties. Our approach holds substantial promise for bridging the benchtop-to-rooftop gap and advancing the production and commercialization of large-area perovskite photovoltaics.|A synergistic dopant-additive combination strategy using methylammonium chloride as the dopant and a Lewis-basic ionic-liquid additive is shown to enable the fabrication of perovskite solar modules achieving record certified performance and long-term operational stability.

Nature

2024-03-04

DOI : 10.1038/s41586-024-07228-z

Proliferation-driven mechanical compression induces signalling centre formation during mammalian organ development

N. P. Shroff; P. Xu; S. Kim; E. R. Shelton; B. J. Gross et al. 

Localized sources of morphogens, called signalling centres, play a fundamental role in coordinating tissue growth and cell fate specification during organogenesis. However, how these signalling centres are established in tissues during embryonic development is still unclear. Here we show that the main signalling centre orchestrating development of rodent incisors, the enamel knot (EK), is specified by a cell proliferation-driven buildup in compressive stresses (mechanical pressure) in the tissue. Direct mechanical measurements indicate that the stresses generated by cell proliferation are resisted by the surrounding tissue, creating a circular pattern of mechanical anisotropy with a region of high compressive stress at its centre that becomes the EK. Pharmacological inhibition of proliferation reduces stresses and suppresses EK formation, and application of external pressure in proliferation-inhibited conditions rescues the formation of the EK. Mechanical information is relayed intracellularly through YAP protein localization, which is cytoplasmic in the region of compressive stress that establishes the EK and nuclear in the stretched anisotropic cells that resist the pressure buildup around the EK. Together, our data identify a new role for proliferation-driven mechanical compression in the specification of a model signalling centre during mammalian organ development.|Shroff and colleagues report that cell proliferation induces localized mechanical compression in the tissue, driving the formation of the main mouse tooth signalling centre via differential YAP expression.

Nature Cell Biology

2024-04-03

DOI : 10.1038/s41556-024-01380-4

Spin-Reorientation-Driven Linear Magnetoelectric Effect in Topological Antiferromagnet Cu3TeO6

V. Kisicek; D. Dominko; M. Culo; Z. Rapljenovic; M. Kuvezdic et al. 

The search for new materials for energy -efficient electronic devices has gained unprecedented importance. Among the various classes of magnetic materials driving this search are antiferromagnets, magnetoelectrics, and systems with topological spin excitations. Cu3TeO6 is a material that belongs to all three of these classes. Combining static electric polarization and magnetic torque measurements with phenomenological simulations we demonstrate that magnetic -field -induced spin reorientation needs to be taken into account to understand the linear magnetoelectric effect in Cu3TeO6. Our calculations reveal that the magnetic field pushes the system from the nonpolar ground state to the polar magnetic structures. However, nonpolar structures only weakly differing from the obtained polar ones exist due to the weak effect that the field -induced breaking of some symmetries has on the calculated structures. Among those symmetries is the PT (1 over bar ‘) symmetry, preserved for Dirac points found in Cu3TeO6. Our findings establish Cu3TeO6 as a promising playground to study the interplay of spintronics-related phenomena.

Physical Review Letters

2024-02-26

Vol. 132 , num. 9, p. 096701.

DOI : 10.1103/PhysRevLett.132.096701

Is There a Special Role for Ovarian Hormones in the Pathogenesis of Lobular Carcinoma?

R. L. Flaherty; G. Sflomos; C. Brisken 

Lobular carcinoma represent the most common special histological subtype of breast cancer, with the majority classed as hormone receptor positive. Rates of invasive lobular carcinoma in postmenopausal women have been seen to increase globally, while other hormone receptor-positive breast cancers proportionally have not followed the same trend. This has been linked to exposure to exogenous ovarian hormones such as hormone replacement therapy. Reproductive factors resulting in increased lifetime exposure to endogenous ovarian hormones have also been linked to an increased risk of lobular breast cancer, and taken together, these data make a case for the role of ovarian hormones in the genesis and progression of the disease. In this review, we summarize current understanding of the epidemiological associations between ovarian hormones and lobular breast cancer and highlight mechanistic links that may underpin the etiology and biology.

Endocrinology

2024-03-29

Vol. 165 , num. 5, p. bqae031.

DOI : 10.1210/endocr/bqae031

Stick-slip-to-stick transition of liquid oscillations in a U-shaped tube

A. Bongarzone; F. Gallaire 

The nonlinear decay of oscillations of a liquid column in a U-shaped tube is investigated within the theoretical framework of the projection method formalized by Bongarzone et al. [Chaos 31, 123124 (2021)]. Starting from the full hydrodynamic system supplemented by a phenomenological contact line model, this physics -inspired method uses successive linear eigenmode projections to simulate the relaxation dynamics of liquid oscillations in the presence of sliding triple lines. Each projection is shown to eventually induce a rapid loss of total energy in the liquid motion, thus contributing to its nonlinear damping. A thorough quantitative comparison with experiments by Dollet et al. [Phys. Rev. Lett. 124, 104502 (2020)] demonstrates that, in contradistinction with their simplistic one -degree -of -freedom model, the present approach not only describes well the transient stick -slip dynamics, but also correctly captures the global stick -slip to stick transition, as well as the residual exponentially decaying bulk motion following the arrest of the contact line, which has been so far overlooked by existing theoretical analyses but is clearly attested experimentally. This study offers a further contribution to rationalizing the impact of contact angle hysteresis and its associated solidlike friction on the decay of liquid oscillations in the presence of sliding triple lines.

Physical Review Fluids

2024-03-19

Vol. 9 , num. 3, p. 034401.

DOI : 10.1103/PhysRevFluids.9.034401

Opportunities and challenges in design and optimization of protein function

D. Listov; C. A. Goverde; B. E. Correia; S. J. Fleishman 

The field of protein design has made remarkable progress over the past decade. Historically, the low reliability of purely structure-based design methods limited their application, but recent strategies that combine structure-based and sequence-based calculations, as well as machine learning tools, have dramatically improved protein engineering and design. In this Review, we discuss how these methods have enabled the design of increasingly complex structures and therapeutically relevant activities. Additionally, protein optimization methods have improved the stability and activity of complex eukaryotic proteins. Thanks to their increased reliability, computational design methods have been applied to improve therapeutics and enzymes for green chemistry and have generated vaccine antigens, antivirals and drug-delivery nano-vehicles. Moreover, the high success of design methods reflects an increased understanding of basic rules that govern the relationships among protein sequence, structure and function. However, de novo design is still limited mostly to alpha-helix bundles, restricting its potential to generate sophisticated enzymes and diverse protein and small-molecule binders. Designing complex protein structures is a challenging but necessary next step if we are to realize our objective of generating new-to-nature activities.|Recent combinations of structure-based and sequence-based calculations and machine learning tools have dramatically improved protein engineering and design. Although designing complex protein structures remains challenging, these methods have enabled the design of therapeutically relevant activities, including vaccine antigens, antivirals and drug-delivery nano-vehicles.

Nature Reviews Molecular Cell Biology

2024-04-02

DOI : 10.1038/s41580-024-00718-y

An Annotated Corpus of Tonal Piano Music from the Long 19th Century

J. Hentschel; Y. Rammos; F. C. Moss; M. Neuwirth; M. A. Rohrmeier 

We present a dataset of 264 annotated piano pieces of nine composers, composed in the long 19th century (https://doi.org/10.5281/zenodo.7483349). Annotations adhere to the DCML harmony annotation standard and include Roman numerals, phrase boundaries, and cadence types. The scores are encoded in the XML-based MuseScore 3 format. Annotations are embedded within the MuseScore files. In addition, all harmony information, alongside key features of the encoded measure and note objects, is provided in the form of plaintext TSV-formatted tables for increased interoperability with other datasets and analysis tools. Annotations were collaboratively created and reviewed by a pool of trained music theorists. Collaboration took place asynchronously online via a semi-automated GitHub-based workflow designed for quality assurance, allowing cycles of revisions and reviews until consensus is reached. The full revision history is retained, providing data for further empirical research on inter-annotator agreement and related topics. We also present descriptive statistics about the nine corpora and the dataset as a whole, including comparisons of pitch-class contents, phrase lengths, modulations, and cadence types. We conclude with a discussion of our musicological principles for corpus building and considerations of representability.

Empirical Musicology Review

2023-01-01

Vol. 18 , num. 1, p. 84-95.

DOI : 10.18061/emr.v18i1.8903

Impact of beam-coupling impedance on the Schottky spectrum of bunched beam

C. Lannoy; K. Lasocha; T. Pieloni; D. Alves; N. Mounet 

The Schottky monitors of the Large Hadron Collider (LHC) can be used for non-invasive beam diagnostics to estimate various bunch characteristics, such as tune, chromaticity, bunch profile or synchrotron frequency distribution. However, collective effects, in particular beam -coupling impedance, can significantly affect Schottky spectra when large bunch charges are involved. In such conditions, the available interpretation methods are difficult to apply directly to the measured spectra, thus preventing the extraction of beam and machine parameters, which is possible for lower bunch charges. To study the impact of impedance on such spectra, we introduce a method for building Schottky spectra from macro -particle simulations performed with the PyHEADTAIL code, applied to LHC beam conditions. In this case, the use of a standard Fast Fourier Transform (FFT) algorithm to recover the spectral content of the beam becomes computationally intractable memory -wise, because of the relatively short bunch length compared to the large revolution period. To circumvent this difficulty, a semi -analytical method was developed to efficiently compute the Fourier transform. The simulated Schottky spectrum is then compared against theoretical formulas and measurements of Schottky signals previously obtained with lead ion beams in the LHC where impedance effects are expected to be limited. Furthermore, this study provides preliminary interpretations of the impact of beam -coupling impedance on proton Schottky spectra by incorporating longitudinal and transverse resonator -like impedance models into the simulations. A theoretical framework is also introduced for the case of the longitudinal impedance, allowing the extension of the existing theoretical formalism.

Journal Of Instrumentation

2024-03-01

Vol. 19 , num. 3, p. P03017.

DOI : 10.1088/1748-0221/19/03/P03017

Gaussian universality of perceptrons with random labels

F. Gerace; F. Krzakala; B. Loureiro; L. Stephan; L. Zdeborova 

While classical in many theoretical settings-and in particular in statistical physics-inspired works-the assumption of Gaussian i.i.d. input data is often perceived as a strong limitation in the context of statistics and machine learning. In this study, we redeem this line of work in the case of generalized linear classification, also known as the perceptron model, with random labels. We argue that there is a large universality class of high-dimensional input data for which we obtain the same minimum training loss as for Gaussian data with corresponding data covariance. In the limit of vanishing regularization, we further demonstrate that the training loss is independent of the data covariance. On the theoretical side, we prove this universality for an arbitrary mixture of homogeneous Gaussian clouds. Empirically, we show that the universality holds also for a broad range of real data sets.

Physical Review E

2024-03-08

Vol. 109 , num. 3, p. 034305.

DOI : 10.1103/PhysRevE.109.034305

Diffusion of brain metabolites highlights altered brain microstructure in type C hepatic encephalopathy: a 9.4 T preliminary study

J. Mosso; G. Briand; K. Pierzchala; D. Simicic; A. Sierra et al. 

Introduction Type C hepatic encephalopathy (HE) is a decompensating event of chronic liver disease leading to severe motor and cognitive impairment. The progression of type C HE is associated with changes in brain metabolite concentrations measured by 1H magnetic resonance spectroscopy (MRS), most noticeably a strong increase in glutamine to detoxify brain ammonia. In addition, alterations of brain cellular architecture have been measured ex vivo by histology in a rat model of type C HE. The aim of this study was to assess the potential of diffusion-weighted MRS (dMRS) for probing these cellular shape alterations in vivo by monitoring the diffusion properties of the major brain metabolites.Methods The bile duct-ligated (BDL) rat model of type C HE was used. Five animals were scanned before surgery and 6- to 7-week post-BDL surgery, with each animal being used as its own control. 1H-MRS was performed in the hippocampus (SPECIAL, TE = 2.8 ms) and dMRS in a voxel encompassing the entire brain (DW-STEAM, TE = 15 ms, diffusion time = 120 ms, maximum b-value = 25 ms/mu m2) on a 9.4 T scanner. The in vivo MRS acquisitions were further validated with histological measures (immunohistochemistry, Golgi-Cox, electron microscopy).Results The characteristic 1H-MRS pattern of type C HE, i.e., a gradual increase of brain glutamine and a decrease of the main organic osmolytes, was observed in the hippocampus of BDL rats. Overall increased metabolite diffusivities (apparent diffusion coefficient and intra-stick diffusivity-Callaghan’s model, significant for glutamine, myo-inositol, and taurine) and decreased kurtosis coefficients were observed in BDL rats compared to control, highlighting the presence of osmotic stress and possibly of astrocytic and neuronal alterations. These results were consistent with the microstructure depicted by histology and represented by a decline in dendritic spines density in neurons, a shortening and decreased number of astrocytic processes, and extracellular edema.Discussion dMRS enables non-invasive and longitudinal monitoring of the diffusion behavior of brain metabolites, reflecting in the present study the globally altered brain microstructure in BDL rats, as confirmed ex vivo by histology. These findings give new insights into metabolic and microstructural abnormalities associated with high brain glutamine and its consequences in type C HE.

Frontiers In Neuroscience

2024-03-20

Vol. 18 , p. 1344076.

DOI : 10.3389/fnins.2024.1344076

Teaching about non-deterministic physics: an almost forgotten fundamental contribution of Marie Curie

G. Margaritondo 

The first historical steps of radioactivity research offer an excellent opportunity to teach a key concept of modern physics: non-deterministic phenomena. However, this opportunity is often wasted because of historical misconceptions and of the irrational fear of radioactive effects. We propose here a lecturing strategy – primarily for undergraduate students – based on interesting historical facts. In particular, on a key conceptual contribution by Marie Curie, an attractive figure for the young women and men of today. Paradoxically, this milestone is almost unknown, whereas it should contribute to her immortal fame — perhaps as much as the discovery of radium.

European Journal Of Physics

2024-05-01

Vol. 45 , num. 3, p. 035803.

DOI : 10.1088/1361-6404/ad312e

The angiogenic growth of cities

I. Capel-Timms; D. Levinson; B. Lahoorpoor; S. Bonetti; G. Manoli 

Describing the space-time evolution of urban population is a fundamental challenge in the science of cities, yet a complete theoretical treatment of the underlying dynamics is still missing. Here, we first reconstruct the evolution of London (UK) over 180 years and show that urban growth consists of an initial phase of diffusion-limited growth, followed by the development of the railway transport network and a consequential shift from central to suburban living. Such dynamics-which are analogous to angiogenesis in biological systems-can be described by a minimalist reaction-diffusion model coupled with economic constraints and an adaptive transport network. We then test the generality of our approach by reproducing the evolution of Sydney, Australia, from 1851 to 2011. We show that the rail system coevolves with urban population, displaying hierarchical characteristics that remain constant over time unless large-scale interventions are put in place to alter the modes of transport. These results demonstrate that transport schemes are first-order controls of long-term urbanization patterns and efforts aimed at creating more sustainable and healthier cities require careful consideration of population-transport feedbacks.

Journal Of The Royal Society Interface

2024-04-03

Vol. 21 , num. 213, p. 20230657.

DOI : 10.1098/rsif.2023.0657

Learning Weakly Convex Regularizers for Convergent Image-Reconstruction Algorithms

A. Goujon; S. J. Neumayer; M. Unser 

We propose to learn non-convex regularizers with a prescribed upper bound on their weak-convexity modulus. Such regularizers give rise to variational denoisers that minimize a convex energy. They rely on few parameters (less than 15,000) and offer a signal-processing interpretation as they mimic handcrafted sparsity-promoting regularizers. Through numerical experiments, we show that such denoisers outperform convex-regularization methods as well as the popular BM3D denoiser. Additionally, the learned regularizer can be deployed to solve inverse problems with iterative schemes that provably converge. For both CT and MRI reconstruction, the regularizer generalizes well and offers an excellent tradeoff between performance, number of parameters, guarantees, and interpretability when compared to other data-driven approaches.

Siam Journal On Imaging Sciences

2024-01-01

Vol. 17 , num. 1, p. 91-115.

DOI : 10.1137/23M1565243

Euclid: Improving the efficiency of weak lensing shear bias calibration

H. Jansen; M. Tewes; T. Schrabback; N. Aghanim; A. Amara et al. 

To obtain an accurate cosmological inference from upcoming weak lensing surveys such as the one conducted by Euclid, the shear measurement requires calibration using galaxy image simulations. As it typically requires millions of simulated galaxy images and consequently a substantial computational effort, seeking methods to speed the calibration up is valuable. We study the efficiency of different noise cancellation methods that aim at reducing the simulation volume required to reach a given precision in the shear measurement. The more efficient a method is, the faster we can estimate the relevant biases up to a required precision level. Explicitly, we compared fit methods with different noise cancellations and a method based on responses. We used GalSim to simulate galaxies both on a grid and at random positions in larger scenes. Placing the galaxies at random positions requires their detection, which we performed with SExtractor. On the grid, we neglected the detection step and, therefore, the potential detection bias arising from it. The shear of the simulated images was measured with the fast moment-based method KSB, for which we note deviations from purely linear shear measurement biases. For the estimation of uncertainties, we used bootstrapping as an empirical method. We extended the response-based approach to work on a wider range of shears and provide accurate estimates of selection biases. We find that each method we studied on top of shape noise cancellation can further increase the efficiency of calibration simulations. The improvement depends on the considered shear amplitude range and the type of simulations (grid-based or random positions). The response method on a grid for small shears provides the biggest improvement. Here the runtime for the estimation of multiplicative biases can be lowered by a factor of 145 compared to the benchmark simulations without any cancellation. In the more realistic case of randomly positioned galaxies, we still find an improvement factor of 70 for small shears using the response method. Alternatively, the runtime can be lowered by a factor of 7 already using pixel noise cancellation on top of shape noise cancellation. Furthermore, we demonstrate that the efficiency of shape noise cancellation can be enhanced in the presence of blending if entire scenes are rotated instead of individual galaxies.

Astronomy & Astrophysics

2024-03-28

Vol. 683 , p. A240.

DOI : 10.1051/0004-6361/202347833

Randomized flexible GMRES with deflated restarting

Y. Jang; L. Grigori; E. Martin; C. Content 

For a high dimensional problem, a randomized Gram-Schmidt (RGS) algorithm is beneficial in computational costs as well as numerical stability. We apply this dimension reduction technique by random sketching to Krylov subspace methods, e.g. to the generalized minimal residual method (GMRES). We propose a flexible variant of GMRES with the randomized Gram-Schmidt-based Arnoldi iteration to produce a set of basis vectors of the Krylov subspace. Even though the Krylov basis is no longer l2\documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} \usepackage{upgreek} \setlength{\oddsidemargin}{-69pt} \begin{document}$$l_2$$\end{document} orthonormal, its random projection onto the low dimensional space achieves l2\documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} \usepackage{upgreek} \setlength{\oddsidemargin}{-69pt} \begin{document}$$l_2$$\end{document} orthogonality. As a result, the numerical stability is observed which turns out to be independent of the dimension of the problem even in extreme scale problems. On the other hand, as the harmonic Ritz values are commonly used in GMRES with deflated restarting to improve convergence, we consider another deflation strategy, for instance disregarding the singular vectors associated with the smallest singular values. We thus introduce a new algorithm of the randomized flexible GMRES with singular value decomposition (SVD)-based deflated restarting. At the end, we carry out numerical experiments in the context of compressible turbulent flow simulations. Our proposed approach exhibits a quite competitive numerical behaviour to existing methods while reducing computational costs.

Numerical Algorithms

2024-03-28

DOI : 10.1007/s11075-024-01801-3

An interior penalty coupling strategy for isogeometric non-conformal Kirchhoff-Love shell patches

G. Guarino; P. Antolin; A. Milazzo; A. Buffa 

This work focuses on the coupling of trimmed shell patches using Isogeometric Analysis, based on higher continuity splines that seamlessly meet the C 1 \documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} \usepackage{upgreek} \setlength{\oddsidemargin}{-69pt} \begin{document}$$C<^>1$$\end{document} requirement of Kirchhoff-Love-based discretizations. Weak enforcement of coupling conditions is achieved through the symmetric interior penalty method, where the fluxes are computed using their correct variationally consistent expression that was only recently proposed and is unprecedentedly adopted herein in the context of coupling conditions. The constitutive relationship accounts for generically laminated materials, although the proposed tests are conducted under the assumption of uniform thickness and lamination sequence. Numerical experiments assess the method for an isotropic and a laminated plate, as well as an isotropic hyperbolic paraboloid shell from the new shell obstacle course. The boundary conditions and domain force are chosen to reproduce manufactured analytical solutions, which are taken as reference to compute rigorous convergence curves in the L 2 \documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} \usepackage{upgreek} \setlength{\oddsidemargin}{-69pt} \begin{document}$$L<^>2$$\end{document} , H 1 \documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} \usepackage{upgreek} \setlength{\oddsidemargin}{-69pt} \begin{document}$$H<^>1$$\end{document} , and H 2 \documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} \usepackage{upgreek} \setlength{\oddsidemargin}{-69pt} \begin{document}$$H<^>2$$\end{document} norms, that closely approach optimal ones predicted by theory. Additionally, we conduct a final test on a complex structure comprising five intersecting laminated cylindrical shells, whose geometry is directly imported from a STEP file. The results exhibit excellent agreement with those obtained through commercial software, showcasing the method’s potential for real-world industrial applications.

Engineering With Computers

2024-03-27

DOI : 10.1007/s00366-024-01965-5

Stress tolerance of lightweight glass-free PV modules for vehicle integration

U. B. Desai; K. Nicolet; S. Prabhudesai; G. Cattaneo; J. Robin et al. 

Electric vehicles (EVs) currently dominate the sales in the automotive market. A big leap in this market can be made by developing a photovoltaic product that can be integrated to an EV, as it can boost the driving range of the EV while reducing the charging frequency. Such vehicle-integrated photovoltaic (VIPV) products are already successfully demonstrated, but they are usually made with glass as a front sheet – making them bulky and limiting their use to the car roofs due to safety reasons. The contemporary focus of the research in the field of VIPV is on developing a product that is lightweight (LW) and easily integrable into the complex shapes of an EV. Therefore, in this work, we present our initial findings on a novel architecture for LW VIPV modules employing polycarbonate (PC) as a front sheet. The mechanical behaviour of the LW module under bending is successfully simulated using finite elements (FE) modelling to predict the fracture of the solar cells, which can then be used as a predictive tool to check the maximal load on the PV body of an EV before cracking the c-Si solar cells. We demonstrate that a change in the temperature of the PC-based LW modules can modify the interspacing between the cells and thus create stress on the connectors. The dog-bone connectors are found to allow almost unconstrained movement of the cells in the module when subjected to variation of temperature. The cell movements may result in mechanical fatigue of the interconnection, which can ultimately result in disconnection of the cells. Initial performance of the dog-bone connectors is investigated by applying mechanical fatigue experiments, which demonstrate that the special geometry of the dog-bone connector could endure a greater number of thermal cycles than a simple prismatic shape would.

Epj Photovoltaics

2024-04-01

Vol. 15 , p. 10.

DOI : 10.1051/epjpv/2024003

On the Arithmetic and Geometric Fusion of Beliefs for Distributed Inference

M. Kayaalp; Y. Inan; E. Telatar; A. H. Sayed 

We study the asymptotic learning rates of belief vectors in a distributed hypothesis testing problem under linear and log-linear combination rules. We show that under both combination strategies, agents are able to learn the truth exponentially fast, with a faster rate under log-linear fusion. We examine the gap between the rates in terms of network connectivity and information diversity. We also provide closed-form expressions for special cases involving federated architectures and exchangeable networks.

Ieee Transactions On Automatic Control

2024-04-01

Vol. 69 , num. 4, p. 2265-2280.

DOI : 10.1109/TAC.2023.3330405

Alpha1-antitrypsin improves survival in murine abdominal sepsis model by decreasing inflammation and sequestration of free heme

J. D. Zemtsovski; S. Tumpara; S. Schmidt; V. Vijayan; A. Klos et al. 

Background Excessive inflammation, hemolysis, and accumulation of labile heme play an essential role in the pathophysiology of multi-organ dysfunction syndrome (MODS) in sepsis. Alpha1-antitrypsin (AAT), an acute phase protein with heme binding capacity, is one of the essential modulators of host responses to inflammation. In this study, we evaluate the putative protective effect of AAT against MODS and mortality in a mouse model of polymicrobial abdominal sepsis.Methods Polymicrobial abdominal sepsis was induced in C57BL/6N mice by cecal ligation and puncture (CLP). Immediately after CLP surgery, mice were treated intraperitoneally with three different forms of human AAT-plasma-derived native (nAAT), oxidized nAAT (oxAAT), or recombinant AAT (recAAT)-or were injected with vehicle. Sham-operated mice served as controls. Mouse survival, bacterial load, kidney and liver function, immune cell profiles, cytokines/chemokines, and free (labile) heme levels were assessed. In parallel, in vitro experiments were carried out with resident peritoneal macrophages (MPM phi) and mouse peritoneal mesothelial cells (MPMC).Results All AAT preparations used reduced mortality in septic mice. Treatment with AAT significantly reduced plasma lactate dehydrogenase and s-creatinine levels, vascular leakage, and systemic inflammation. Specifically, AAT reduced intraperitoneal accumulation of free heme, production of cytokines/chemokines, and neutrophil infiltration into the peritoneal cavity compared to septic mice not treated with AAT. In vitro experiments performed using MPMC and primary MPM phi confirmed that AAT not only significantly decreases lipopolysaccharide (LPS)-induced pro-inflammatory cell activation but also prevents the enhancement of cellular responses to LPS by free heme. In addition, AAT inhibits cell death caused by free heme in vitro.Conclusion Data from the septic CLP mouse model suggest that intraperitoneal AAT treatment alone is sufficient to improve sepsis-associated organ dysfunctions, preserve endothelial barrier function, and reduce mortality, likely by preventing hyper-inflammatory responses and by neutralizing free heme.

Frontiers In Immunology

2024-03-18

Vol. 15 , p. 1368040.

DOI : 10.3389/fimmu.2024.1368040

Quantitative prediction of crystallization in laser powder bed fusion of a Zr-based bulk metallic glass with high oxygen content

N. Sohrabi; T. Ivas; J. Jhabvala; J. E. K. Schawe; J. F. Loffler et al. 

One of the main challenges in the fabrication of bulk metallic glasses (BMGs) via laser-based additive manufacturing (AM) is undesirable crystal phase formation, which usually deteriorates the mechanical properties of the BMG fabricated parts. Understanding the crystallization process therefore helps to manufacture parts with desirable properties. In this study, partially crystallized Zr-based BMG (AMZ4) samples were fabricated via laser powder-bed fusion (LPBF). Samples with a different time delay between each adjacent laser tracks were produced to vary the thermal history during the manufacturing process. Two characteristic thermal effects were decoupled, a global one and a local one. The global thermal effect originates from heat accumulation in the whole sample, increasing the overall sample temperature, reducing local cooling rates from the melt and changing thermal cycles in the heat-affected zones (HAZs). The local thermal effect refers to the contribution of each individual laser-track pass, happening even in the absence of the global effect. As the time delay is increased, the sample has more time to dissipate heat, which implies a reduced influence of the global thermal effects, and therefore lower crystalline fractions. The experiments were designed such as to allow for detailed validations of the thermal fields predicted by a Finite Element (FEM) model of the LPBF process. These were indeed used as an input to predict the crystallized fraction in each AMZ4 sample, using previously measured TTT diagrams. For the first time, quantitative predictions with a numerical model could be made over a wide range of crystallized fractions, and were in good agreement with those measured by DSC. To validate the model, a 0 % crystallized fraction was also simulated, corresponding to optimized printing conditions despite the high oxygen content (>1000 ppm) of the AMZ4 chosen for the experiments. It therefore represents a reliable tool for finding optimal processing parameters of BMGs known to be challenging to print.

Materials & Design

2024-03-01

Vol. 239 , p. 112744.

DOI : 10.1016/j.matdes.2024.112744

A cut-cell method for the numerical simulation of 3D multiphase flows with strong interfacial effects

A. Caboussat; J. Hess; A. Masserey; M. Picasso 

We present a numerical model for the approximation of multiphase flows with free surfaces and strong interfacial effects. The model relies on the multiphase incompressible Navier-Stokes equations, and includes surface tension effects on the interfaces between phases, and contact angles. The volume -of -fluid approach is used to track the interfaces and the free surfaces between the various phases and the ambient air. The numerical method relies on an operator splitting strategy. The space discretization relies on a two -grid approach that uses an unstructured finite element mesh for diffusion phenomena and a structured Cartesian grid for advection phenomena. An adaptive mesh refinement algorithm is incorporated to better track the interfaces and free surfaces on the finite element mesh, and approximate more accurately surface forces. The model is validated through numerical experiments, in particular for emulsion problems.

Journal Of Computational Physics

2024-02-26

Vol. 504 , p. 112846.

DOI : 10.1016/j.jcp.2024.112846

Speciation of Lanthanide Metal Ion Dopants in Microcrystalline All-Inorganic Halide Perovskite CsPbCl3

D. J. Kubicki; D. Prochowicz; A. Hofstetter; A. Ummadisingu; L. Emsley 

Lanthanides are versatile modulators of optoelectronic properties owing to their narrow optical emission spectra across the visible and near-infrared range. Their use in metal halide perovskites (MHPs) has recently gained prominence, although their fate in these materials has not yet been established at the atomic level. We use cesium-133 solid-state NMR to establish the speciation of all nonradioactive lanthanide ions (La3+, Ce3+, Pr3+, Nd3+, Sm3+, Sm2+, Eu3+, Eu2+, Gd3+, Tb3+, Dy3+, Ho3+, Er3+, Tm3+, Yb3+, Lu3+) in microcrystalline CsPbCl3. Our results show that all lanthanides incorporate into the perovskite structure of CsPbCl3 regardless of their oxidation state (+2, +3).

Journal Of The American Chemical Society

2024-03-28

Vol. 146 , num. 14, p. 9554-9563.

DOI : 10.1021/jacs.3c11427

Can Gas Consumption Data Improve the Performance of Electricity Theft Detection?

W. Liao; R. Zhu; T. Ishizaki; Y. Li; Y. Jia et al. 

Machine learning techniques have been extensively developed in the field of electricity theft detection. However, almost all typical models primarily rely on electricity consumption data to identify fraudulent users, often neglecting other pertinent household information such as gas consumption data. This article aims to explore the untapped potential of gas consumption data, a critical yet overlooked factor in electricity theft detection. In particular, we perform theoretical, qualitative, and quantitative correlation analyses between gas and electricity consumption data. Then, we propose two model-agnostic frameworks (i.e., multichannel network and twin network frameworks) to seamlessly integrate gas consumption data into machine learning models. Simulation results show a significant improvement in model performance when gas consumption data are incorporated using our proposed frameworks. Also, our proposed gas and electricity convolutional neural network, based on the proposed framework, demonstrates superior performance compared to classical and recent machine learning models on datasets with varying fraudulent ratios.

Ieee Transactions On Industrial Informatics

2024-03-18

DOI : 10.1109/TII.2024.3371991

Design and in vitro Characterization of a Wearable Multisensing System for Hydration Monitoring

S. Tonello; A. Zacchini; A. Galli; A. Golparvar; A. Meimandi et al. 

Dehydration is a frequent condition in the elderly and can lead to serious health complications if not compensated timely. Early diagnosis can be problematic, as medical examinations in the hospital would be needed. Fully wearable low-cost multisensing devices for home use could help investigate and prevent critical conditions. We introduce a sensing platform designed for operation in remote healthcare for the elderly. It combines a low-cost, highly customizable flexible inkjet-printed multisensor bracelet, including sensors for body impedance, skin hydration, and temperature monitoring, with a small, low-power front-end circuit and an embedded unit that communicates by a Low Power Wide Area Network (LoRaWAN) transmission interface. We describe individual system components and present in vitro experiments for their characterization. Reported results represent the fundamental proof of concept for the development of a fully operating device that can be used satisfactorily to monitor dehydration in a real-life application scenario.

Ieee Transactions On Instrumentation And Measurement

2024-01-01

Vol. 73 , p. 1-11.

DOI : 10.1109/TIM.2024.3369161

Gamma-ray Spectroscopy in Low-Power Nuclear Research Reactors

O. V. Pakari; A. Lucas; F. B. Darby; V. P. Lamirand; T. Maurer et al. 

Gamma-ray spectroscopy is an effective technique for radioactive material characterization, routine inventory verification, nuclear safeguards, health physics, and source search scenarios. Gamma-ray spectrometers typically cannot be operated in the immediate vicinity of nuclear reactors due to their high flux fields and their resulting inability to resolve individual pulses. Low-power reactor facilities offer the possibility to study reactor gamma-ray fields, a domain of experiments hitherto poorly explored. In this work, we present gamma-ray spectroscopy experiments performed with various detectors in two reactors: The EPFL zero-power research reactor CROCUS, and the neutron beam facility at the Ohio State University Research Reactor (OSURR). We employed inorganic scintillators (CeBr3), organic scintillators (trans-stilbene and organic glass), and high-purity germanium semiconductors (HPGe) to cover a range of typical-and new-instruments used in gamma-ray spectroscopy. The aim of this study is to provide a guideline for reactor users regarding detector performance, observed responses, and therefore available information in the reactor photon fields up to 2 MeV. The results indicate several future prospects, such as the online (at criticality) monitoring of fission products (like Xe, I, and La), dual-particle sensitive experiments, and code validation opportunities.

Journal Of Nuclear Engineering

2024-03-01

Vol. 5 , num. 1, p. 26-43.

DOI : 10.3390/jne5010003

Accretion Disk Size and Updated Time-delay Measurements in the Gravitationally Lensed Quasar SDSS J165043.44+425149.3

A. B. Rivera; C. W. Morgan; S. M. Florence; K. Kniezewski; M. Millon et al. 

We analyze variability in 15-season optical lightcurves from the doubly imaged lensed quasar SDSS J165043.44+425149.3 (SDSS1650), comprising five seasons of monitoring data from the Maidanak Observatory (277 nights in total, including the two seasons of data previously presented in Vuissoz et al.), five seasons of overlapping data from the Mercator telescope (269 nights), and 12 seasons of monitoring data from the US Naval Observatory, Flagstaff Station at lower cadence (80 nights). We update the 2007 time-delay measurement for SDSS1650 with these new data, finding a time delay of Delta t AB = – 55.1 – 3.7 + 4.0 days, with image A leading image B. We analyze the microlensing variability in these lightcurves using a Bayesian Monte Carlo technique to yield measurements of the size of the accretion disk at lambda rest = 2420 angstrom, finding a half-light radius of log(r 1/2/cm) = 16.19 – 0.58 + 0.38 assuming a 60 degrees inclination angle. This result is unchanged if we model 30% flux contamination from the broad-line region. We use the width of the Mg ii line in the existing Sloan Digital Sky Survey spectra to estimate the mass of this system’s supermassive black hole, finding M BH = 2.47 x 109 M circle dot. We confirm that the accretion disk size in this system, whose black hole mass is on the very high end of the M BH scale, is fully consistent with the existing quasar accretion disk size-black hole mass relation.

Astrophysical Journal

2024-04-01

Vol. 964 , num. 2, p. 173.

DOI : 10.3847/1538-4357/ad3069

The molecular scale mechanism of deposition ice nucleation on silver iodide

G. Roudsari; M. Lbadaoui-Darvas; A. Welti; A. Nenes; A. Laaksonen 

Heterogeneous ice nucleation is a ubiquitous process in the natural and built environment. Deposition ice nucleation, i.e. heterogeneous ice nucleation that – according to the traditional view – occurs in a subsaturated water vapor environment and in the absence of supercooled water on the solid, ice-forming surface, is among the most important ice formation processes in high-altitude cirrus and mixed-phase clouds. Despite its importance, very little is known about the mechanism of deposition ice nucleation at the microscopic level. This study puts forward an adsorption-based mechanism for deposition ice nucleation through results from a combination of atomistic simulations, experiments and theoretical modelling. One of the most potent laboratory surrogates of ice nucleating particles, silver iodide, is used as a substrate for the simulations. We find that water initially adsorbs in clusters which merge and grow over time to form layers of supercooled water. Ice nucleation on silver iodide requires at minimum the adsorption of 4 molecular layers of water. Guided by the simulations we propose the following fundamental freezing steps: (1) Water molecules adsorb on the surface, forming nanodroplets. (2) The supercooled water nanodroplets merge into a continuous multilayer when they grow to about 3 molecular layers thick. (3) The layer continues to grow until the critical thickness for freezing is reached. (4) The critical ice cluster continues to grow.|Schematic of the proposed deposition ice nucleation mechanism on AgI (0001).

Environmental Science-Atmospheres

2024-02-15

Vol. 4 , num. 2, p. 243-251.

DOI : 10.1039/d3ea00140g

Multi-Ported GC-eDRAM Bitcell with Dynamic Port Configuration and Refresh Mechanism

R. Golman; R. Giterman; A. Teman 

Embedded memories occupy an increasingly dominant part of the area and power budgets of modern systems-on-chips (SoCs). Multi-ported embedded memories, commonly used by media SoCs and graphical processing units, occupy even more area and consume higher power due to larger memory bitcells. Gain-cell eDRAM is a high-density alternative for multi-ported operation with a small silicon footprint. However, conventional gain-cell memories have limited data availability, as they require periodic refresh operations to maintain their data. In this paper, we propose a novel multi-ported gain-cell design, which provides up-to N read ports and M independent write ports (NRMW). In addition, the proposed design features a configurable mode of operation, supporting a hidden refresh mechanism for improved memory availability, as well as a novel opportunistic refresh port approach. An 8kbit memory macro was implemented using a four-transistor bitcell with four ports (2R2W) in a 28 nm FD-SOI technology, offering up-to a 3x reduction in bitcell area compared to other dual-ported SRAM memory options, while also providing 100% memory availability, as opposed to conventional dynamic memories, which are hindered by limited availability.

Journal Of Low Power Electronics And Applications

2024-03-01

Vol. 14 , num. 1, p. 2.

DOI : 10.3390/jlpea14010002

On the Sums over Inverse Powers of Zeros of the Hurwitz Zeta Function and Some Related Properties of These Zeros

S. Sekatskii 

Recently, we have applied the generalized Littlewood theorem concerning contour integrals of the logarithm of the analytical function to find the sums over inverse powers of zeros for the incomplete gamma and Riemann zeta functions, polygamma functions, and elliptical functions. Here, the same theorem is applied to study such sums for the zeros of the Hurwitz zeta function zeta(s,z), including the sum over the inverse first power of its appropriately defined non-trivial zeros. We also study some related properties of the Hurwitz zeta function zeros. In particular, we show that, for any natural N and small real epsilon, when z tends to n = 0, -1, -2 horizontal ellipsis we can find at least N zeros of zeta(s,z) in the epsilon neighborhood of 0 for sufficiently small |z+n|, as well as one simple zero tending to 1, etc.

Symmetry-Basel

2024-03-01

Vol. 16 , num. 3, p. 326.

DOI : 10.3390/sym16030326

Realization of Organocerium-Based Fullerene Molecular Materials Showing Mott Insulator-Type Behavior

P. Pandey; X. Wang; H. Gupta; P. W. Smith; E. Lapsheva et al. 

Electron-rich organocerium complexes (C5Me4H)(3)Ce and [(C5Me5)(2)Ce(ortho-oxa)], with redox potentials E-1/2 = -0.82 V and E-1/2 = -0.86 V versus Fc/Fc(+), respectively, were reacted with fullerene (C-60) in different stoichiometries to obtain molecular materials. Structurally characterized cocrystals: [(C5Me4H)(3)Ce](2)C-60 (1) and [(C5Me5)(2)Ce(ortho-oxa)](3)C-60 (2) of C-60 with cerium-based, molecular rare earth precursors are reported for the first time. The extent of charge transfer in 1 and 2 was evaluated using a series of physical measurements: FT-IR, Raman, solid-state UV-vis-NIR spectroscopy, X-ray absorption near-edge structure (XANES) spectroscopy, and magnetic susceptibility measurements. The physical measurements indicate that 1 and 2 comprise the cerium(III) oxidation state, with formally neutral C-60 as a cocrystal in both cases. Pressure-dependent periodic density functional theory calculations were performed to study the electronic structure of 1. Inclusion of a Hubbard-U parameter removes Ce f states from the Fermi level, opens up a band gap, and stabilizes FM/AFM magnetic solutions that are isoenergetic because of the large distances between the Ce(III) cations. The electronic structure of this strongly correlated Mott insulator-type system is reminiscent of the well-studied Ce2O3.

Acs Applied Materials & Interfaces

2024-03-27

Vol. 16 , num. 14, p. 17857-17869.

DOI : 10.1021/acsami.3c18766

Mean-field transport equations and energy theorem for plasma edge turbulent transport

R. A. J. Coosemans; W. Dekeyser; M. Baelmans 

This paper establishes a mean-field equation set and an energy theorem to provide a theoretical basis in view of the development of self-consistent, physics-based turbulent transport models for mean-field transport codes. A rigorous averaging procedure identifies the exact form of the perpendicular turbulent fluxes which are modelled by ad hoc diffusive terms in mean-field transport codes, next to other closure terms which are not commonly considered. Earlier work suggested that the turbulent $E\times B$ particle and heat fluxes, which are thus identified to be important closure terms, can be modelled to reasonable accuracy using the kinetic energy in the $E\times B$ velocity fluctuations ($k_{E}$). The related enstrophy led to further modelling improvements in an initial study, although further analysis is required. To support this modelling approach, transport equations are derived analytically for both quantities. In particular, an energy theorem is established in which the various source and sink terms of $k_{E}$ are shown to couple to mean-field and turbulent parallel kinetic energy, kinetic energy in the other perpendicular velocity components, the thermal energy and the magnetic energy. This provides expressions for the interchange, drift-wave and Reynolds stress terms amongst others. Note that most terms in these energy equations are in turn closure terms. It is suggested to evaluate these terms using reference data from detailed turbulence code simulations in future work.

Journal Of Plasma Physics

2024-03-15

Vol. 90 , num. 2, p. 905900202.

DOI : 10.1017/S0022377824000163

Two- and Three-Dimensional Superconducting Phases in the Weyl Semimetal TaP at Ambient Pressure. (vol 10, 288, 2020)

M. R. Van Delft; S. Pezzini; M. Koenig; P. Tinnemans; N. E. Hussey et al. 

Crystals

2024-03-01

Vol. 14 , num. 3, p. 264.

DOI : 10.3390/cryst14030264

Microbial genome collection of aerobic granular sludge cultivated in sequencing batch reactors using different carbon source mixtures

J. S. Saini; A. Adler; L. Cardona; P. N. R. Ramirez; R. Pei et al. 

Aerobic granular sludge (AGS) consists of a microbial consortium that has an important role in wastewater treatment. This study investigates AGS microorganisms cultivated in a laboratory-scale sequencing batch reactor. Metagenomic sequencing was conducted using PacBio and Illumina, resulting in 759 metagenome-assembled genomes, 331 of which remained after dereplication.

Microbiology Resource Announcements

2024-03-27

DOI : 10.1128/mra.00102-24

The Extraordinary March 2022 East Antarctica “Heat” Wave. Part II: Impacts on the Antarctic Ice Sheet

J. D. Wille; S. P. Alexander; C. Amory; R. Baiman; L. Barthelemy et al. 

Between 15 and 19 March 2022, East Antarctica experienced an exceptional heat wave with widespread 30 degrees-40 degrees C temperature anomalies across the ice sheet. In Part I, we assessed the meteorological drivers that generated an intense atmospheric river (AR) that caused these record-shattering temperature anomalies. Here, we continue our large collaborative study by analyzing the widespread and diverse impacts driven by the AR landfall. These impacts included widespread rain and surface melt that was recorded along coastal areas, but this was outweighed by widespread high snowfall accumulations resulting in a largely positive surface mass balance contribution to the East Antarctic region. An analysis of the surface energy budget indicated that widespread downward longwave radiation anomalies caused by large cloudliquid water contents along with some scattered solar radiation produced intense surface warming. Isotope measurements of the moisture were highly elevated, likely imprinting a strong signal for past climate reconstructions. The AR event attenuated cosmic ray measurements at Concordia, something previously never observed. Last, an extratropical cyclone west of the AR landfall likely triggered the final collapse of the critically unstable Conger Ice Shelf while further reducing an already record low sea ice extent.

Journal Of Climate

2024-02-01

Vol. 37 , num. 3, p. 779-799.

DOI : 10.1175/JCLI-D-23-0176.1

The Key Players of CNS function: Exploring the Effects of Region, Age, and Sex on Human Glia Diversity

L. A. Seeker; N. Bestard-Cuche; S. Jaekel; N. -L. Kazakou; S. M. K. Bostrand et al. 

Glia

2023-07-01

16th European Meeting on Glial Cells in Health and Disease, Berlin, GERMANY, JUL 08-11, 2023.

p. E478-E479

Resolving the morpho-functional responses of locally-constrained retinal microglia with morphOMICs

R. J. Cubero; G. Colombo; A. Venturino; R. Schulz; M. Maes et al. 

Glia

2023-07-01

16th European Meeting on Glial Cells in Health and Disease, Berlin, GERMANY, JUL 08-11, 2023.

p. E465-E466

MorphOMICs: a new algorithm to unravel region- and sex-dependent microglia morphological plasticity in health and disease

G. Colombo; R. J. A. Cubero; A. Venturino; L. Kanari; R. Schulz et al. 

Glia

2023-07-01

16th European Meeting on Glial Cells in Health and Disease, Berlin, GERMANY, JUL 08-11, 2023.

p. E459-E459

Profiling the chromatin landscape of adult human oligodendroglia using single-cell epigenomics

M. Kabbe; L. Seeker; E. Agirre; K. Carlstrom; F. B. Pohl et al. 

Glia

2023-07-01

16th European Meeting on Glial Cells in Health and Disease, Berlin, GERMANY, JUL 08-11, 2023.

p. E458-E458

Loss of TDP-43 in microglia leads to abnormal brain development

A. C. Compagnion; A. Ivanov; F. G. Ibanez; D. Beule; M. E. Tremblay et al. 

Glia

2023-07-01

16th European Meeting on Glial Cells in Health and Disease, Berlin, GERMANY, JUL 08-11, 2023.

p. E341-E341

The multimodality cell segmentation challenge: toward universal solutions

J. Ma; R. Xie; S. Ayyadhury; C. Ge; A. Gupta et al. 

Cell segmentation is a critical step for quantitative single-cell analysis in microscopy images. Existing cell segmentation methods are often tailored to specific modalities or require manual interventions to specify hyper-parameters in different experimental settings. Here, we present a multimodality cell segmentation benchmark, comprising more than 1,500 labeled images derived from more than 50 diverse biological experiments. The top participants developed a Transformer-based deep-learning algorithm that not only exceeds existing methods but can also be applied to diverse microscopy images across imaging platforms and tissue types without manual parameter adjustments. This benchmark and the improved algorithm offer promising avenues for more accurate and versatile cell analysis in microscopy imaging.|Cell segmentation is crucial in many image analysis pipelines. This analysis compares many tools on a multimodal cell segmentation benchmark. A Transformer-based model performed best in terms of performance and general applicability.

Nature Methods

2024-03-26

DOI : 10.1038/s41592-024-02233-6

Towards a muon collider

C. Accettura; D. Adams; R. Agarwal; C. Ahdida; C. Aime et al. 

A muon collider would enable the big jump ahead in energy reach that is needed for a fruitful exploration of fundamental interactions. The challenges of producing muon collisions at high luminosity and 10 TeV centre of mass energy are being investigated by the recently-formed International Muon Collider Collaboration. This Review summarises the status and the recent advances on muon colliders design, physics and detector studies. The aim is to provide a global perspective of the field and to outline directions for future work.

European Physical Journal C

2023-09-26

Vol. 83 , num. 9, p. 864.

DOI : 10.1140/epjc/s10052-023-11889-x

Euclid: The search for primordial features

M. Ballardini; Y. Akrami; F. Finelli; D. Karagiannis; B. Li et al. 

Primordial features, in particular oscillatory signals, imprinted in the primordial power spectrum of density perturbations represent a clear window of opportunity for detecting new physics at high-energy scales. Future spectroscopic and photometric measurements from the Euclid space mission will provide unique constraints on the primordial power spectrum, thanks to the redshift coverage and high-accuracy measurement of nonlinear scales, thus allowing us to investigate deviations from the standard power-law primordial power spectrum. We consider two models with primordial undamped oscillations superimposed on the matter power spectrum described by 1 + A(X) sin (omega(X)Xi(X) + 2 pi phi(X)), one linearly spaced in k space with Xi(lin) equivalent to k/k(*) where k(*) = 0.05 Mpc(-1) and the other logarithmically spaced in k space with Xi(log) equivalent to ln(k/k(*)). We note that AX is the amplitude of the primordial feature, omega(X) is the dimensionless frequency, and phi(X) is the normalised phase, where X = {lin, log}. We provide forecasts from spectroscopic and photometric primary Euclid probes on the standard cosmological parameters Omega(m,0), Omega(b,0), h, ns, and sigma(8), and the primordial feature parameters A(X), omega(X), and phi(X). We focus on the uncertainties of the primordial feature amplitude A(X) and on the capability of Euclid to detect primordial features at a given frequency. We also study a nonlinear density reconstruction method in order to retrieve the oscillatory signals in the primordial power spectrum, which are damped on small scales in the late-time Universe due to cosmic structure formation. Finally, we also include the expected measurements from Euclid’s galaxy-clustering bispectrum and from observations of the cosmic microwave background (CMB). We forecast uncertainties in estimated values of the cosmological parameters with a Fisher matrix method applied to spectroscopic galaxy clustering (GC(sp)), weak lensing (WL), photometric galaxy clustering (GC(ph)), the cross correlation (XC) between GC(ph) and WL, the spectroscopic galaxy clustering bispectrum, the CMB temperature and E-mode polarisation, the temperature-polarisation cross correlation, and CMB weak lensing. We consider two sets of specifications for the Euclid probes (pessimistic and optimistic) and three di fferent CMB experiment configurations, that is, Planck, Simons Observatory (SO), and CMB Stage-4 (CMB-S4). We find the following percentage relative errors in the feature amplitude with Euclid primary probes: for the linear (logarithmic) feature model, with a fiducial value of A(X) = 0.01, omega(X) = 10, and phi(X) = 0.21% (22%) in the pessimistic settings and 18% (18%) in the optimistic settings at a 68.3% confidence level (CL) using GC(sp) +WL +GC(ph) +XC. While the uncertainties on the feature amplitude are strongly dependent on the frequency value when single Euclid probes are considered, we find robust constraints on A X from the combination of spectroscopic and photometric measurements over the frequency range of (1, 10(2.1)). Due to the inclusion of numerical reconstruction, the GC(sp) bispectrum, SO-like CMB reduces the uncertainty on the primordial feature amplitude by 32%-48%, 50%-65%, and 15%-50%, respectively.|Combining all the sources of information explored expected from Euclid in combination with the future SO-like CMB experiment, we forecast A(lin) similar or equal to 0.010 +/- 0.001 at a 68.3% CL and A(log) similar or equal to 0.010 +/- 0.001 for GC(sp)(PS rec + BS) +WL +GC(ph) +XC +SO-like for both the optimistic and pessimistic settings over the frequency range (1, 10(2.1)).

Astronomy & Astrophysics

2024-03-25

Vol. 683 , p. A220.

DOI : 10.1051/0004-6361/202348162

Search for Inelastic Dark Matter in Events with Two Displaced Muons and Missing Transverse Momentum in Proton-Proton Collisions at p s=13 TeV

A. Hayrapetyan; A. Tumasyan; W. Adam; J. W. Andrejkovic; T. Bergauer et al. 

A search for dark matter in events with a displaced nonresonant muon pair and missing transverse momentum is presented. The analysis is performed using an integrated luminosity of 138 fb-1 of protonproton (pp) collision data at a center -of -mass energy of 13 TeV produced by the LHC in 2016-2018. No significant excess over the predicted backgrounds is observed. Upper limits are set on the product of the inelastic dark matter production cross section sigma(pp -> A0 -> chi 1 chi 2) and the decay branching fraction B(chi 2 -> chi 1 mu thorn mu-), where A0 is a dark photon and chi 1 and chi 2 are states in the dark sector with near mass degeneracy. This is the first dedicated collider search for inelastic dark matter.

Physical Review Letters

2024-01-23

Vol. 132 , num. 4, p. 041802.

DOI : 10.1103/PhysRevLett.132.041802

Tumor-educated Gr1+CD11b+cells drive breast cancer metastasis via OSM/IL-6/JAK-induced cancer cell plasticity

S. Peyvandi; M. Bulliard; A. Yilmaz; A. Kauzlaric; R. Marcone et al. 

Cancer cell plasticity contributes to therapy resistance and metastasis, which represent the main causes of cancer-related death, including in breast cancer. The tumor microenvironment drives cancer cell plasticity and metastasis, and unraveling the underlying cues may provide novel strategies for managing metastatic disease. Using breast cancer experimental models as a clinically relevant paracrine/autocrine axis instigating breast cancer cell plasticity and triggering metastasis.

Journal Of Clinical Investigation

2024-03-15

Vol. 134 , num. 6, p. e166847.

DOI : 10.1172/JCI166847

Search for Scalar Leptoquarks Produced via τ-Lepton-Quark Scattering in pp Collisions at ffiffi s p=13 TeV

A. Hayrapetyan; A. Tumasyan; W. Adam; J. W. Andrejkovic; T. Bergauer et al. 

The first search for scalar leptoquarks produced in z-lepton-quark collisions is presented. It is based on a set of proton-proton collision data recorded with the CMS detector at the LHC at a center-of-mass energy of 13 TeV corresponding to an integrated luminosity of 138 fb-1. The reconstructed final state consists of a jet, significant missing transverse momentum, and a z lepton reconstructed through its hadronic or leptonic decays. Limits are set on the product of the leptoquark production cross section and branching fraction and interpreted as exclusions in the plane of the leptoquark mass and the leptoquark-z-quark coupling strength.

Physical Review Letters

2024-02-08

Vol. 132 , num. 6, p. 061801.

DOI : 10.1103/PhysRevLett.132.061801

Measurement of the K+ → π+γγ decay

E. C. Gil; A. Kleimenova; E. Minucci; S. Padolski; P. Petrov et al. 

A sample of 3984 candidates of the K+ -> pi(+)gamma gamma decay, with an estimated background of 291 +/- 14 events, was collected by the NA62 experiment at CERN during 2017-2018. In order to describe the observed di-photon mass spectrum, the next-to-leading order contribution in chiral perturbation theory was found to be necessary. The decay branching ratio in the full kinematic range is measured to be (9.61 +/- 0.17) x 10(-7). The first search for production and prompt decay of an axion-like particle with gluon coupling in the process K+ -> pi(+) a, a -> gamma gamma is also reported.

Physics Letters B

2024-02-13

Vol. 850 , p. 138513.

DOI : 10.1016/j.physletb.2024.138513

Dynamics of the charge transfer to solvent process in aqueous iodide

J. Lan; M. Chergui; A. Pasquarello 

Charge-transfer-to-solvent states in aqueous halides are ideal systems for studying the electron-transfer dynamics to the solvent involving a complex interplay between electronic excitation and solvent polarization. Despite extensive experimental investigations, a full picture of the charge-transfer-to-solvent dynamics has remained elusive. Here, we visualise the intricate interplay between the dynamics of the electron and the solvent polarization occurring in this process. Through the combined use of ab initio molecular dynamics and machine learning methods, we investigate the structure, dynamics and free energy as the excited electron evolves through the charge-transfer-to-solvent process, which we characterize as a sequence of states denoted charge-transfer-to-solvent, contact-pair, solvent-separated, and hydrated electron states, depending on the distance between the iodine and the excited electron. Our assignment of the charge-transfer-to-solvent states is supported by the good agreement between calculated and measured vertical binding energies. Our results reveal the charge transfer process in terms of the underlying atomic processes and mechanisms.|Solvated electrons can be formed through photo-induced charge-transfer-to-solvent electronic states of halide ions in water. Here, the authors use machine learning accelerated molecular dynamics simulations to follow the evolution of these states for aqueous iodide in detail.

Nature Communications

2024-03-21

Vol. 15 , num. 1, p. 2544.

DOI : 10.1038/s41467-024-46772-0

Cortical cell assemblies and their underlying connectivity: An in silico study

A. Ecker; D. E. Santander; S. Bolanos-Puchet; J. B. Isbister; M. W. Reimann 

Recent developments in experimental techniques have enabled simultaneous recordings from thousands of neurons, enabling the study of functional cell assemblies. However, determining the patterns of synaptic connectivity giving rise to these assemblies remains challenging. To address this, we developed a complementary, simulation-based approach, using a detailed, large-scale cortical network model. Using a combination of established methods we detected functional cell assemblies from the stimulus-evoked spiking activity of 186,665 neurons. We studied how the structure of synaptic connectivity underlies assembly composition, quantifying the effects of thalamic innervation, recurrent connectivity, and the spatial arrangement of synapses on dendrites. We determined that these features reduce up to 30%, 22%, and 10% of the uncertainty of a neuron belonging to an assembly. The detected assemblies were activated in a stimulus-specific sequence and were grouped based on their position in the sequence. We found that the different groups were affected to different degrees by the structural features we considered. Additionally, connectivity was more predictive of assembly membership if its direction aligned with the temporal order of assembly activation, if it originated from strongly interconnected populations, and if synapses clustered on dendritic branches. In summary, reversing Hebb’s postulate, we showed how cells that are wired together, fire together, quantifying how connectivity patterns interact to shape the emergence of assemblies. This includes a qualitative aspect of connectivity: not just the amount, but also the local structure matters; from the subcellular level in the form of dendritic clustering to the presence of specific network motifs.

Plos Computational Biology

2024-03-01

Vol. 20 , num. 3, p. e1011891.

DOI : 10.1371/journal.pcbi.1011891

Disulfide-Cross-Linked Tetra-PEG Gels

Z. Meng; L. Loeser; K. Saalwaechter; U. Gasser; H-A. Klok 

The preparation of polymer gels via cross-linking of four-arm star-shaped poly(ethylene glycol) (Tetra-PEG) precursors is an attractive strategy to prepare networks with relatively well-defined topologies. Typically, Tetra-PEG gels are obtained by cross-linking heterocomplementary reactive Tetra-PEG precursors. This study, in contrast, explores the cross-linking of self-reactive, thiol-end functional Tetra-PEG macromers to form disulfide-cross-linked gels. The structure of the disulfide-cross-linked Tetra-PEG gels was studied with multiple-quantum NMR (MQ-NMR) spectroscopy and small-angle neutron scattering (SANS) experiments. In line with earlier simulation studies, these experiments showed a strong dependence of the relative fractions of the different network connectivities on the concentration of the thiol-end functional Tetra-PEG macromer that was used for the synthesis of the networks. Disulfide-cross-linked Tetra-PEG gels prepared at macromer concentrations below the overlap concentration (c = 0.66c*) primarily feature defect connectivity motifs, such as primary loops and dangling ends. For networks prepared at macromer concentrations above the overlap concentration, the fraction of single-link connectivities was found to be similar to that in amide-cross-linked Tetra-PEG gels obtained by heterocomplementary cross-linking of N-hydroxysuccinimide ester and amine functional Tetra-PEG macromers. Since disulfide bonds are susceptible to reductive cleavage, these disulfide-cross-linked gels are of interest, e.g., as reduction-sensitive hydrogels for a variety of biomedical applications.

Macromolecules

2024-03-25

Vol. 57 , num. 7, p. 3058-3065.

DOI : 10.1021/acs.macromol.3c02514

Evaluation of controllers for augmentative hip exoskeletons and their effects on metabolic cost of walking: explicit versus implicit synchronization

A. R. Manzoori; D. Malatesta; J. Primavesi; A. Ijspeert; M. Bouri 

Background: Efficient gait assistance by augmentative exoskeletons depends on reliable control strategies. While numerous control methods and their effects on the metabolic cost of walking have been explored in the literature, the use of different exoskeletons and dissimilar protocols limit direct comparisons. In this article, we present and compare two controllers for hip exoskeletons with different synchronization paradigms. Methods: The implicit-synchronization-based approach, termed the Simple Reflex Controller (SRC), determines the assistance as a function of the relative loading of the feet, resulting in an emerging torque profile continuously assisting extension during stance and flexion during swing. On the other hand, the Hip-Phase-based Torque profile controller (HPT) uses explicit synchronization and estimates the gait cycle percentage based on the hip angle, applying a predefined torque profile consisting of two shorter bursts of assistance during stance and swing. We tested the controllers with 23 naive healthy participants walking on a treadmill at 4 km & sdot; h-1, without any substantial familiarization. Results: Both controllers significantly reduced the metabolic rate compared to walking with the exoskeleton in passive mode, by 18.0% (SRC, p < 0.001) and 11.6% (HPT, p < 0.001). However, only the SRC led to a significant reduction compared to walking without the exoskeleton (8.8%, p = 0.004). The SRC also provided more mechanical power and led to bigger changes in the hip joint kinematics and walking cadence. Our analysis of mechanical powers based on a whole-body analysis suggested a reduce in ankle push-off under this controller. There was a strong correlation (Pearson's r = 0.778, p < 0.001) between the metabolic savings achieved by each participant with the two controllers. Conclusion: The extended assistance duration provided by the implicitly synchronized SRC enabled greater metabolic reductions compared to the more targeted assistance of the explicitly synchronized HPT. Despite the different assistance profiles and metabolic outcomes, the correlation between the metabolic reductions with the two controllers suggests a difference in individual responsiveness to assistance, prompting more investigations to explore the person-specific factors affecting assistance receptivity.

Frontiers In Bioengineering And Biotechnology

2024-03-12

Vol. 12 , p. 1324587.

DOI : 10.3389/fbioe.2024.1324587

Boosting likelihood learning with event reweighting

S. Chen; A. Glioti; G. Panico; A. Wulzer 

Extracting maximal information from experimental data requires access to the likelihood function, which however is never directly available for complex experiments like those performed at high energy colliders. Theoretical predictions are obtained in this context by Monte Carlo events, which do furnish an accurate but abstract and implicit representation of the likelihood. Strategies based on statistical learning are currently being developed to infer the likelihood function explicitly by training a continuous-output classifier on Monte Carlo events. In this paper, we investigate the usage of Monte Carlo events that incorporate the dependence on the parameters of interest by reweighting. This enables more accurate likelihood learning with less training data and a more robust learning scheme that is more suited for automation and extensive deployment. We illustrate these advantages in the context of LHC precision probes of new Effective Field Theory interactions.

Journal Of High Energy Physics

2024-03-20

num. 3, p. 117.

DOI : 10.1007/JHEP03(2024)117

Deconvolution of the X-ray absorption spectrum of trans-1,3-butadiene with resonant Auger spectroscopy

D. M. P. Holland; J. Suchan; J. Janos; C. Bacellar; L. M. Diniz Leroy et al. 

High-resolution carbon K-edge X-ray photoelectron, X-ray absorption, non-resonant and resonant Auger spectra are presented of gas phase trans-1,3-butadiene alongside a detailed theoretical analysis utilising nuclear ensemble approaches and vibronic models to simulate the spectroscopic observables. The resonant Auger spectra recorded across the first pre-edge band reveal a complex evolution of different electronic states which remain relatively well-localised on the edge or central carbon sites. The results demonstrate the sensitivity of the resonant Auger observables to the weighted contributions from multiple electronic states. The gradually evolving spectral features can be accurately and feasibly simulated within nuclear ensemble methods and interpreted with the population analysis.

Physical Chemistry Chemical Physics

2024-03-25

DOI : 10.1039/d4cp00053f

The Extraordinary March 2022 East Antarctica “Heat” Wave. Part I: Observations and Meteorological Drivers

J. D. Wille; S. P. Alexander; C. Amory; R. Baiman; L. Barthelemy et al. 

Between 15 and 19 March 2022, East Antarctica experienced an exceptional heat wave with widespread 30 degrees-40 degrees C temperature anomalies across the ice sheet. This record-shattering event saw numerous monthly temperature records being broken including a new all-time temperature record of -9.4 degrees C on 18 March at Concordia Station despite March typically being a transition month to the Antarctic coreless winter. The driver for these temperature extremes was an intense atmospheric river advecting subtropical/midlatitude heat and moisture deep into the Antarctic interior. The scope of the temperature records spurred a large, diverse collaborative effort to study the heat wave’s meteorological drivers, impacts, and historical climate context. Here we focus on describing those temperature records along with the intricate meteorological drivers that led to the most intense atmospheric river observed over East Antarctica. These efforts describe the Rossby wave activity forced from intense tropical convection over the Indian Ocean. This led to an atmospheric river and warm conveyor belt intensification near the coastline, which reinforced atmospheric blocking deep into East Antarctica. The resulting moisture flux and upper-level warm-air advection eroded the typical surface temperature inversions over the ice sheet. At the peak of the heat wave, an area of 3.3 million km(2) in East Antarctica exceeded previous March monthly temperature records. Despite a temperature anomaly return time of about 100 years, a closer recurrence of such an event is possible under future climate projections. In Part II we describe the various impacts this extreme event had on the East Antarctic cryosphere.|SIGNIFICANCE STATEMENT: In March 2022, a heat wave and atmospheric river caused some of the highest temperature anomalies ever observed globally and captured the attention of the Antarctic science community. Using our diverse collective expertise, we explored the causes of the event and have placed it within a historical climate context. One key takeaway is that Antarctic climate extremes are highly sensitive to perturbations in the midlatitudes and subtropics. This heat wave redefined our expectations of the Antarctic climate. Despite the rare chance of occurrence based on past climate, a future temperature extreme event of similar magnitude is possible, especially given anthropogenic climate change.

Journal Of Climate

2024-02-01

Vol. 37 , num. 3.

DOI : 10.1175/JCLI-D-23-0175.1

Measurement of the τ lepton polarization in Z boson decays in proton-proton collisions at √s=13 TeV

A. Hayrapetyan; A. Tumasyan; W. Adam; J. W. Andrejkovic; T. Bergauer et al. 

The polarization of tau leptons is measured using leptonic and hadronic tau lepton decays in Z -> tau(+)tau(-) events in proton-proton collisions at root s = 13 TeV recorded by CMS at the CERN LHC with an integrated luminosity of 36.3 fb(-1). The measured tau(-) lepton polarization at the Z boson mass pole is P-tau(Z) = -0.144 +/- 0.006 (stat) +/- 0.014 (syst) = -0.144 +/- 0.015, in good agreement with the measurement of the tau lepton asymmetry parameter of A(tau) = 0.1439 +/- 0.0043 = -P-tau(Z) at LEP. The tau lepton polarization depends on the ratio of the vector to axial-vector couplings of the tau leptons in the neutral current expression, and thus on the effective weak mixing angle sin(2)theta(eff)(W), independently of the Z boson production mechanism. The obtained value sin(2)theta(eff)(W) = 0.2319 +/- 0.0008(stat) +/- 0.0018(syst) = 0.2319 +/- 0.0019 is in good agreement with measurements at e(+)e(-) colliders.

Journal Of High Energy Physics

2024-01-19

num. 1, p. 101.

DOI : 10.1007/JHEP01(2024)101

Light-Controlled Multiconfigurational Conductance Switching in a Single 1D Metal-Organic Wire

A. Cahlik; M. Ondracek; C. Wackerlin; A. P. Sole; O. Siri et al. 

Precise control of multiple spin states on the atomic scale presents a promising avenue for designing and realizing magnetic switches. Despite substantial progress in recent decades, the challenge of achieving control over multiconfigurational reversible switches in low-dimensional nanostructures persists. Our work demonstrates multiple, fully reversible plasmon-driven spin-crossover switches in a single pi-d metal-organic chain suspended between two electrodes. The plasmonic nanocavity stimulated by external visible light allows for reversible spin crossover between low- and high-spin states of different cobalt centers within the chain. We show that the distinct spin configurations remain stable for minutes under cryogenic conditions and can be nonperturbatively detected by conductance measurements. This multiconfigurational plasmon-driven spin-crossover demonstration extends the available toolset for designing optoelectrical molecular devices based on SCO compounds.

Acs Nano

2024-03-22

DOI : 10.1021/acsnano.3c12909

Redox Properties of Flavin in BLUF and LOV Photoreceptor Proteins from Hybrid QM/MM Molecular Dynamics Simulation

M. Kilic; B. Ensing 

Flavins play an important role in many oxidation and reduction processes in biological systems. For example, flavin adenine dinucleotide (FAD) and flavin mononucleotide (FMN) are common cofactors found in enzymatic proteins that use the special redox properties of these flavin molecules for their catalytic or photoactive functions. The redox potential of the flavin is strongly affected by its (protein) environment; however, the underlying molecular interactions of this effect are still unknown. Using hybrid quantum mechanics/molecular mechanics (QM/MM) simulation techniques, we have studied the redox properties of flavin in the gas phase, aqueous solution, and two different protein environments, in particular, a BLUF and a LOV photoreceptor domain. By mapping the changes in electrostatic potential and solvent structure, we gain insight into how specific polarization of the flavin by its environment tunes the reduction potential. We find also that accurate calculation of the reduction potentials of these systems by using the hybrid QM/MM approach is hampered by a too limited sampling of the counterion configurations and by artifacts at the QM/MM boundary. We make suggestions for how these issues can be overcome.

Journal Of Physical Chemistry B

2024-03-22

Vol. 128 , num. 13, p. 3069-3080.

DOI : 10.1021/acs.jpcb.3c06245

Multiplicity-free Representations of Algebraic Groups

M. W. Liebeck; G. M. Seitz; D. M. Testerman 

Let K be an algebraically closed field of characteristic zero, and let G be a connected reductive algebraic group over K. We address the problem of classifying triples (G, H, V ), where H is a proper connected subgroup of G, and V is a finitedimensional irreducible G -module such that the restriction of V to H is multiplicityfree – that is, each of its composition factors appears with multiplicity 1. A great deal of classical work, going back to Dynkin, Howe, Kac, Stembridge, Weyl and others, and also more recent work of the authors, can be set in this context. In this paper we determine all such triples in the case where H and G are both simple algebraic groups of type A, and H is embedded irreducibly in G. While there are a number of interesting familes of such triples (G, H, V ), the possibilities for the highest weights of the representations defining the embeddings H < G and G < GL(V) are very restricted. For example, apart from two exceptional cases, both weights can only have support on at most two fundamental weights; and in many of the examples, one or other of the weights corresponds to the alternating or symmetric square of the natural module for either G or H.

Memoirs Of The American Mathematical Society

2024-02-01

Vol. 294 , num. 1466, p. 1-282.

DOI : 10.1090/memo/1466

Inverse design of metal-organic frameworks for direct air capture of CO2via deep reinforcement learning

H. Park; S. Majumdar; X. Zhang; J. Kim; B. Smit 

The combination of several interesting characteristics makes metal-organic frameworks (MOFs) a highly sought-after class of nanomaterials for a broad range of applications like gas storage and separation, catalysis, drug delivery, and so on. However, the ever-expanding and nearly infinite chemical space of MOFs makes it extremely challenging to identify the most optimal materials for a given application. In this work, we present a novel approach using deep reinforcement learning for the inverse design of MOFs, our motivation being designing promising materials for the important environmental application of direct air capture of CO2 (DAC). We demonstrate that our reinforcement learning framework can successfully design MOFs with critical characteristics important for DAC. The reinforcement learning framework uniquely integrates two separate predictive models within its structure, uncovering two distinct subspaces in the MOF chemical space: one with high CO2 heat of adsorption and the other with preferential adsorption of CO2 from humid air, with few structures having both characteristics. Our model can thus serve as an essential tool for the rational design and discovery of materials for different target properties and applications.

Digital Discovery

2024-03-12

DOI : 10.1039/d4dd00010b

Thouless pumping in Josephson junction arrays

S. Athanasiou; I. E. Nielsen; M. M. Wauters; M. Burrello 

Recent advancements in fabrication techniques have enabled unprecedented clean interfaces and gate tunability in semiconductor-superconductor heterostructures. Inspired by these developments, we propose protocols to realize Thouless quantum pumping in electrically tunable Josephson junction arrays. We analyze, in particular, the implementation of the Rice -Mele and the Harper-Hofstadter pumping schemes, whose realization would validate these systems as flexible platforms for quantum simulations. We investigate numerically the long-time behavior of chains of controllable superconducting islands in the Coulomb-blockaded regime. Our findings provide new insights into the dynamics of periodically driven interacting systems and highlight the robustness of Thouless pumping with respect to boundary effects typical of superconducting circuits.

Scipost Physics

2024-03-01

Vol. 16 , num. 3, p. 083.

DOI : 10.21468/SciPostPhys.16.3.083

Characteristics and ultra-high total ionizing dose response of 22nm fully depleted silicon-on-insulator

G. Termo; G. Borghello; F. Faccio; K. Kloukina; M. Caselle et al. 

The radiation response of MOS transistors in a 22 nm Fully Depleted Silicon -On -Insulator (FDSOI) technology exposed to ultra -high total ionizing dose (TID) was investigated. Custom structures including n- and p -channel devices with different sizes and threshold voltage flavours were irradiated with X-rays up to a TID of 100 Mrad(SiO2) with different back -gate bias configurations, from -8 V to 2 V. The investigation revealed that the performance is significantly affected by TID, with the radiation response being dominated by the charge trapped in the buried oxide.

Journal Of Instrumentation

2024-03-01

Vol. 19 , num. 3, p. C03039.

DOI : 10.1088/1748-0221/19/03/C03039

A Coverage Control-Based Idle Vehicle Rebalancing Approach for Autonomous Mobility-on-Demand Systems

P. Zhu; I. I. Sirmatel; G. Ferrari-Trecate; N. Geroliminis 

As an emerging mode of urban transportation, autonomous mobility-on-demand (AMoD) systems show the potential in improving mobility in cities through timely and door-to-door services. However, the spatiotemporal imbalances between mobility demand and supply may lead to inefficiencies and a low quality of service. Vehicle rebalancing (i.e., dispatching idle vehicles to high-demand areas) is a potential solution for efficient AMoD fleet management. In this article, we formulate the vehicle rebalancing problem as a coverage control problem for the deployment of a fleet of mobile agents for AMoD operation in urban areas. Performance is demonstrated via microscopic simulations representing a large urban road network in Shenzhen, China. The results reveal the potential of the proposed method in improving service rates and decreasing passenger waiting times.

Ieee Transactions On Control Systems Technology

2024-03-19

DOI : 10.1109/TCST.2024.3375765

Thalamic contributions to psychosis susceptibility: Evidence from co-activation patterns accounting for intra-seed spatial variability (μCAPs)

F. Delavari; C. Sandini; N. Kojovic; L. F. Saccaro; S. Eliez et al. 

The temporal variability of the thalamus in functional networks may provide valuable insights into the pathophysiology of schizophrenia. To address the complexity of the role of the thalamic nuclei in psychosis, we introduced micro-co-activation patterns (mu CAPs) and employed this method on the human genetic model of schizophrenia 22q11.2 deletion syndrome (22q11.2DS). Participants underwent resting-state functional MRI and a data-driven iterative process resulting in the identification of six whole-brain mu CAPs with specific activity patterns within the thalamus. Unlike conventional methods, mu CAPs extract dynamic spatial patterns that reveal partially overlapping and non-mutually exclusive functional subparts. Thus, the mu CAPs method detects finer foci of activity within the initial seed region, retaining valuable and clinically relevant temporal and spatial information. We found that a mu CAP showing co-activation of the mediodorsal thalamus with brain-wide cortical regions was expressed significantly less frequently in patients with 22q11.2DS, and its occurrence negatively correlated with the severity of positive psychotic symptoms. Additionally, activity within the auditory-visual cortex and their respective geniculate nuclei was expressed in two different mu CAPs. One of these auditory-visual mu CAPs co-activated with salience areas, while the other co-activated with the default mode network (DMN). A significant shift of occurrence from the salience+visuo-auditory-thalamus to the DMN + visuo-auditory-thalamus mu CAP was observed in patients with 22q11.2DS. Thus, our findings support existing research on the gatekeeping role of the thalamus for sensory information in the pathophysiology of psychosis and revisit the evidence of geniculate nuclei hyperconnectivity with the audio-visual cortex in 22q11.2DS in the context of dynamic functional connectivity, seen here as the specific hyper-occurrence of these circuits with the task-negative brain networks.|Unveiling thalamic dynamics in psychosis susceptibility using mu CAPs analysis. Our novel method reveals finer foci of thalamic activity, identifying abnormal connectivity patterns associated with positive psychotic symptoms. Geniculate hyperconnectivity with audio-visual cortex is prevalent during rest in patients, shedding light on thalamic sensory gatekeeping in the pathophysiology of psychosis. image

Human Brain Mapping

2024-04-01

Vol. 45 , num. 5, p. e26649.

DOI : 10.1002/hbm.26649

Overhead-constrained circuit knitting for variational quantum dynamics

G. Gentinetta; F. Metz; G. Carleo 

Simulating the dynamics of large quantum systems is a formidable yet vital pursuit for obtaining a deeper understanding of quantum mechanical phenomena. While quantum computers hold great promise for speeding up such simulations, their practical application remains hindered by limited scale and pervasive noise. In this work, we propose an approach that addresses these challenges by employing circuit knitting to partition a large quantum system into smaller subsystems that can each be simulated on a separate device. The evolution of the system is governed by the projected variational quantum dynamics (PVQD) algorithm, supplemented with constraints on the parameters of the variational quantum circuit, ensuring that the sampling overhead imposed by the circuit knitting scheme remains controllable. We test our method on quantum spin systems with multiple weakly entangled blocks each consisting of strongly correlated spins, where we are able to accurately simulate the dynamics while keeping the sampling overhead manageable. Further, we show that the same method can be used to reduce the circuit depth by cutting long-ranged gates.

Quantum

2024-03-21

Vol. 8 , p. 07857.

High-resolution MHz time- and angle-resolved photoemission spectroscopy based on a tunable vacuum ultraviolet source

L. Hellbruck; M. Puppin; F. Guo; D. D. Hickstein; S. Benhabib et al. 

The time- and angle-resolved photoemission spectroscopy (trARPES) allows for direct mapping of the electronic band structure and its dynamic response on femtosecond timescales. Here, we present a new ARPES system, powered by a new fiber-based femtosecond light source in the vacuum ultraviolet range, accessing the complete first Brillouin zone for most materials. We present trARPES data on Au(111), polycrystalline Au, Bi2Se3, and TaTe2, demonstrating an energy resolution of 21 meV with a time resolution of <360 fs, at a high repetition rate of 1 MHz. The system is integrated with an extreme ultraviolet high harmonic generation beamline, enabling an excellent tunability of the time-bandwidth resolution.

Review Of Scientific Instruments

2024-03-01

Vol. 95 , num. 3, p. 033007.

DOI : 10.1063/5.0179549

Implementation of the ISORROPIA-lite aerosol thermodynamics model into the EMAC chemistry climate model (based on MESSy v2.55): implications for aerosol composition and acidity

A. Milousis; A. P. Tsimpidi; H. Tost; S. N. Pandis; A. Nenes et al. 

This study explores the differences in performance and results by various versions of the ISORROPIA thermodynamic module implemented within the ECHAM/MESSy Atmospheric Chemistry (EMAC) model. Three different versions of the module were used, ISORROPIA II v1, ISORROPIA II v2.3, and ISORROPIA-lite. First, ISORROPIA II v2.3 replaced ISORROPIA II v1 in EMAC to improve pH predictions close to neutral conditions. The newly developed ISORROPIA-lite has been added to EMAC alongside ISORROPIA II v2.3. ISORROPIA-lite is more computationally efficient and assumes that atmospheric aerosols exist always as supersaturated aqueous (metastable) solutions, while ISORROPIA II includes the option to allow for the formation of solid salts at low RH conditions (stable state). The predictions of EMAC by employing all three aerosol thermodynamic models were compared to each other and evaluated against surface measurements from three regional observational networks in the polluted Northern Hemisphere (Interagency Monitoring of Protected Visual Environments (IMPROVE), European Monitoring and Evaluation Programme (EMEP), and Acid Deposition Monitoring Network of East Asia (EANET)). The differences between ISORROPIA II v2.3 and ISORROPIA-lite were minimal in all comparisons with the normalized mean absolute difference for the concentrations of all major aerosol components being less than 11 % even when different phase state assumptions were used. The most notable differences were lower aerosol concentrations predicted by ISORROPIA-lite in regions with relative humidity in the range of 20 % to 60 % compared to the predictions of ISORROPIA II v2.3 in stable mode. The comparison against observations yielded satisfactory agreement especially over the USA and Europe but higher deviations over East Asia, where the overprediction of EMAC for nitrate was as high as 4 mu g m-3 (similar to 20%). The mean annual aerosol pH predicted by ISORROPIA-lite was on average less than a unit lower than ISORROPIA II v2.3 in stable mode, mainly for coarse-mode aerosols over the Middle East. The use of ISORROPIA-lite accelerated EMAC by nearly 5 % compared to the use of ISORROPIA II v2.3 even if the aerosol thermodynamic calculations consume a relatively small fraction of the EMAC computational time. ISORROPIA-lite can therefore be a reliable and computationally efficient alternative to the previous thermodynamic module in EMAC.

Geoscientific Model Development

2024-02-12

Vol. 17 , num. 3, p. 1111-1131.

DOI : 10.5194/gmd-17-1111-2024

Hybrid mesoporous electrodes evidence CISS effect on water oxidation

P. Vensaus; Y. Liang; N. Zigon; N. Avarvari; V. Mujica et al. 

Controlling product selectivity is essential for improving the efficiency of multi-product reactions. Electrochemical water oxidation is a reaction of main importance in different applications, e.g., renewable energy schemes and environmental protection, where H2O2 and O-2 are the two principal products. In this Communication, the product selectivity of electrochemical water oxidation was controlled by making use of the chiral induced spin selectivity (CISS) effect at mesoporous-TiO2 on the molecule-modified Au substrate. Our results show a decrease in H2O2 formation when using chiral hetero-helicene molecules adsorbed on the Au substrate. We propose a mechanism for this kinetic effect based on the onset of CISS-induced spin polarization on the Au-helicene chiral interface. We also present a new tunable substrate to investigate the CISS mechanism.

Journal Of Chemical Physics

2024-03-21

Vol. 160 , num. 11, p. 111103.

DOI : 10.1063/5.0199339

Land Cover Mapping From Multiple Complementary Experts Under Heavy Class Imbalance

V. Zermatten; X. Lu; J. Castillo-Navarro; T. Kellenberger; D. Tuia 

Deep learning has emerged as a promising avenue for automatic mapping, demonstrating high efficacy in land cover categorization through various semantic segmentation models. Nonetheless, the practical deployment of these models encounters important challenges from the imbalanced distribution of samples between the classes, a problem inherent to real-world datasets. This results in models biased towards frequent classes that perform poorly on rare classes. While existing approaches to fight class imbalance mainly focus on image classification, here we propose to address this issue for semantic segmentation with a multiple complementary experts (MCE) structure. Taking inspiration from ensemble models, each expert in our MCE specializes in certain classes and works with other experts in a complementary manner to generate robust predictions for rare classes. We compare our approach to other existing methods and also explore different logit aggregation methods, to identify the performance upper bounds and improvement directions. Our model is evaluated on a large-scale and challenging alpine land cover dataset that we make openly available. In addition, we evaluated our model on an imbalanced land cover mapping dataset, FLAIR, to highlight its adaptability. Overall, our MCE model yields notable improvement in performances on the medium and rare classes compared to baseline methods, while only slightly compromising on the overall accuracy. Despite its simplicity, the MCE approach stands as a practical solution for more operational semantic segmentation models, not trading off performances on rare but important classes.

Ieee Journal Of Selected Topics In Applied Earth Observations And Remote Sensing

2024-01-01

Vol. 17 , p. 6468-6477.

DOI : 10.1109/JSTARS.2024.3369876

Machine learning method for the classification of the state of living organisms’ oscillations

D. Kweku; M. I. Villalba; R. G. Willaert; O. M. Yantorno; M. E. Vela et al. 

The World Health Organization highlights the urgent need to address the global threat posed by antibiotic-resistant bacteria. Efficient and rapid detection of bacterial response to antibiotics and their virulence state is crucial for the effective treatment of bacterial infections. However, current methods for investigating bacterial antibiotic response and metabolic state are time-consuming and lack accuracy. To address these limitations, we propose a novel method for classifying bacterial virulence based on statistical analysis of nanomotion recordings. We demonstrated the method by classifying living Bordetella pertussis bacteria in the virulent or avirulence phase, and dead bacteria, based on their cellular nanomotion signal. Our method offers significant advantages over current approaches, as it is faster and more accurate. Additionally, its versatility allows for the analysis of cellular nanomotion in various applications beyond bacterial virulence classification.

Frontiers In Bioengineering And Biotechnology

2024-03-07

Vol. 12 , p. 1348106.

DOI : 10.3389/fbioe.2024.1348106

Climbing into their Skin to Understand Contextual Protein-Protein Associations and Localizations: Functional Investigations in Transgenic Live Model Organisms

M. J. C. Long; Y. Aye 

Borrowing some quotes from Harper Lee’s novel “To Kill A Mockingbird” to help frame our manuscript, we discuss methods to profile local proteomes. We initially focus on chemical biology regimens that function in live organisms and use reactive biotin species for this purpose. We then consider ways to add new dimensions to these experimental regimens, principally by releasing less reactive (i. e., more selective) (preter)natural electrophiles. Although electrophile release methods may have lower resolution and label fewer proteins than biotinylation methods, their ability to probe simultaneously protein function and locale raises new and interesting possibilities for the field.|What Stirs Beneath. Understanding protein-specific interactomes, or localization, is crucial for decoding protein function. New biotinylation methods can do just that even in live organisms. However, these methods have some limitations as they are intrinsically unable to directly probe function. Here new methods that can investigate locale-specific reactivity, are discussed, opening routes to locale-specific perturbation of function. image

Chembiochem

2024-03-21

DOI : 10.1002/cbic.202400005

A search for new physics in central exclusive production using the missing mass technique with the CMS detector and the CMS-TOTEM precision proton spectrometer

A. Tumasyan; W. Adam; J. W. Andrejkovic; T. Bergauer; S. Chatterjee et al. 

A generic search is presented for the associated production of a Z boson or a photon with an additional unspecified massive particle X, pp -> pp + Z/gamma + X, in proton-tagged events from proton-proton collisions at root s = 13 TeV, recorded in 2017 with the CMS detector and the CMS-TOTEM precision proton spectrometer. The missing mass spectrum is analysed in the 600-1600 GeV range and a fit is performed to search for possible deviations from the background expectation. No significant excess in data with respect to the background predictions has been observed. Model-independent upper limits on the visible production cross section of pp -> pp + Z/gamma + X are set.

European Physical Journal C

2023-09-20

Vol. 83 , num. 9, p. 827.

DOI : 10.1140/epjc/s10052-023-11687-5

Luminosity determination using Z boson production at the CMS experiment

A. Hayrapetyan; A. Tumasyan; W. Adam; J. W. Andrejkovic; T. Bergauer et al. 

The measurement of Z boson production is presented as a method to determine the integrated luminosity of CMS data sets. The analysis uses proton-proton collision data, recorded by the CMS experiment at the CERN LHC in 2017 at a center-of-mass energy of 13 TeV. Events with Z bosons decaying into a pair ofmuons are selected. The total number of Z bosons produced in a fiducial volume is determined, together with the identification efficiencies and correlations from the same data set, in small intervals of 20 pb(-1) of integrated luminosity, thus facilitating the efficiency and rate measurement as a function of time and instantaneous luminosity. Using the ratio of the efficiency-corrected numbers of Z bosons, the precisely measured integrated luminosity of one data set is used to determine the luminosity of another. For the first time, a full quantitative uncertainty analysis of the use of Z bosons for the integrated luminosity measurement is performed. The uncertainty in the extrapolation between two data sets, recorded in 2017 at low and high instantaneous luminosity, is less than 0.5%. We show that the Z boson rate measurement constitutes a precise method, complementary to traditional methods, with the potential to improve the measurement of the integrated luminosity.

European Physical Journal C

2024-01-10

Vol. 84 , num. 1, p. 26.

DOI : 10.1140/epjc/s10052-023-12268-2

Measurement of the Higgs boson production via vector boson fusion and its decay into bottom quarks in proton-proton collisions at √s=13 TeV

A. Hayrapetyan; A. Tumasyan; W. Adam; J. W. Andrejkovic; T. Bergauer et al. 

A measurement of the Higgs boson (H) production via vector boson fusion (VBF) and its decay into a bottom quark-antiquark pair (b (b) over bar) is presented using proton-proton collision data recorded by the CMS experiment at root s = 13TeV and corresponding to an integrated luminosity of 90.8 fb(-1). Treating the gluon-gluon fusion process as a background and constraining its rate to the value expected in the standard model (SM) within uncertainties, the signal strength of the VBF process, defined as the ratio of the observed signal rate to that predicted by the SM, is measured to be mu(qqH)(Hb (b) over bar) = 1.01(-0.46)(+0.55). The VBF signal is observed with a significance of 2.4 standard deviations relative to the background prediction, while the expected significance is 2.7 standard deviations. Considering inclusive Higgs boson production and decay into bottom quarks, the signal strength is measured to be mu(incl.)(Hb (b) over bar) = 0.99(-0.41)(+0.48), corresponding to an observed (expected) significance of 2.6 (2.9) standard deviations.

Journal Of High Energy Physics

2024-01-30

num. 1, p. 173.

DOI : 10.1007/JHEP01(2024)173

NMR and MS reveal characteristic metabolome atlas and optimize esophageal squamous cell carcinoma early detection

Y. Zhao; C. Ma; R. Cai; L. Xin; Y. Li et al. 

Metabolic changes precede malignant histology. However, it remains unclear whether detectable characteristic metabolome exists in esophageal squamous cell carcinoma (ESCC) tissues and biofluids for early diagnosis. Here, we conduct NMR- and MS-based metabolomics on 1,153 matched ESCC tissues, normal mucosae, pre- and one-week post-operative sera and urines from 560 participants across three hospitals, with machine learning and WGCNA. Aberrations in ‘alanine, aspartate and glutamate metabolism’ proved to be prevalent throughout the ESCC evolution, consistently identified by NMR and MS, and reflected in 16 serum and 10 urine metabolic signatures in both discovery and validation sets. NMR-based simplified panels of any five serum or urine metabolites outperform clinical serological tumor markers (AUC = 0.984 and 0.930, respectively), and are effective in distinguishing early-stage ESCC in test set (serum accuracy = 0.994, urine accuracy = 0.879). Collectively, NMR-based biofluid screening can reveal characteristic metabolic events of ESCC and be feasible for early detection (ChiCTR2300073613).|Metabolic changes often occur during the early stages of cancer development. Here, the authors develop metabolomics signatures from tissues, pre- and post-operative sera and urines in esophageal squamous cell carcinoma, which may aid in early diagnosis.

Nature Communications

2024-03-19

Vol. 15 , num. 1, p. 2463.

DOI : 10.1038/s41467-024-46837-0

Six-dimensional sphere packing and linear programming

M. De Courcy-Ireland; M. Dostert; M. Viazovska 

We prove that the Cohn-Elkies linear programming bound for sphere packing is not sharp in dimension 6. The proof uses duality and optimization over a space of modular forms, generalizing a construction of Cohn- Triantafillou [Math. Comp. 91 (2021), pp. 491-508] to the case of odd weight and non -trivial character.

Mathematics Of Computation

2024-03-20

DOI : 10.1090/mcom/3959

Accurate and rapid antibiotic susceptibility testing using a machine learning-assisted nanomotion technology platform

A. Sturm; G. Jozwiak; M. P. Verge; L. Munch; G. Cathomen et al. 

Antimicrobial resistance (AMR) is a major public health threat, reducing treatment options for infected patients. AMR is promoted by a lack of access to rapid antibiotic susceptibility tests (ASTs). Accelerated ASTs can identify effective antibiotics for treatment in a timely and informed manner. We describe a rapid growth-independent phenotypic AST that uses a nanomotion technology platform to measure bacterial vibrations. Machine learning techniques are applied to analyze a large dataset encompassing 2762 individual nanomotion recordings from 1180 spiked positive blood culture samples covering 364 Escherichia coli and Klebsiella pneumoniae isolates exposed to cephalosporins and fluoroquinolones. The training performances of the different classification models achieve between 90.5 and 100% accuracy. Independent testing of the AST on 223 strains, including in clinical setting, correctly predict susceptibility and resistance with accuracies between 89.5% and 98.9%. The study shows the potential of this nanomotion platform for future bacterial phenotype delineation.|Sturm et. al developed a 2 to 4 h antibiotic susceptibility test based on bacterial vibrations. This diagnostic test applies to the most frequently found gram-negative bacteria in bloodstream infections and demonstrates its potential in contributing to faster treatment decisions.

Nature Communications

2024-03-18

Vol. 15 , num. 1, p. 2037.

DOI : 10.1038/s41467-024-46213-y

Dynamical simulation via quantum machine learning with provable generalization

J. Gibbs; Z. Holmes; M. C. Caro; N. Ezzell; H-Y. Huang et al. 

Much attention has been paid to dynamical simulation and quantum machine learning (QML) independently as applications for quantum advantage, while the possibility of using QML to enhance dynamical simulations has not been thoroughly investigated. Here we develop a framework for using QML methods to simulate quantum dynamics on near-term quantum hardware. We use generalization bounds, which bound the error a machine learning model makes on unseen data, to rigorously analyze the training data requirements of an algorithm within this framework. Our algorithm is thus resource efficient in terms of qubit and data requirements. Furthermore, our preliminary numerics for the XY model exhibit efficient scaling with problem size, and we simulate 20 times longer than Trotterization on IBMQ-Bogota.

Physical Review Research

2024-03-05

Vol. 6 , num. 1, p. 013241.

DOI : 10.1103/PhysRevResearch.6.013241

The role of computational methods in cardiovascular medicine: a narrative review

I. Fumagalli; S. Pagani; C. Vergara; L. Dede’; D. A. Adebo et al. 

Background and Objective: Computational models of the cardiovascular system allow for a detailed and quantitative investigation of both physiological and pathological conditions, thanks to their ability to combine clinical-possibly patient-specific-data with physical knowledge of the processes underlying the heart function. These models have been increasingly employed in clinical practice to understand pathological mechanisms and their progression, design medical devices, support clinicians in improving therapies. Hinging upon a long-year experience in cardiovascular modeling, we have recently constructed a computational multi-physics and multi-scale integrated model of the heart for the investigation of its physiological function, the analysis of pathological conditions, and to support clinicians in both diagnosis and treatment planning. This narrative review aims to systematically discuss the role that such model had in addressing specific clinical questions, and how further impact of computational models on clinical practice are envisaged. Methods: We developed computational models of the physical processes encompassed by the heart function myocardial perfusion) and of their inherently strong coupling. To solve the equations of such models, we devised advanced numerical methods, implemented in a flexible and highly efficient software library. We also developed computational procedures for clinical data post-processing-like the reconstruction of the heart geometry and motion from diagnostic images-and for their integration into computational models. Key Content and Findings: Our integrated computational model of the heart function provides noninvasive measures of indicators characterizing the heart function and dysfunctions, and sheds light on its underlying processes and their coupling. Moreover, thanks to the close collaboration with several clinical partners, we addressed specific clinical questions on pathological conditions, such as arrhythmias, ventricular dyssynchrony, hypertrophic cardiomyopathy, degeneration of prosthetic valves, and the way coronavirus disease 2019 (COVID-19) infection may affect the cardiac function. In multiple cases, we were also able to provide quantitative indications for treatment. Conclusions: Computational models provide a quantitative and detailed tool to support clinicians in patient care, which can enhance the assessment of cardiac diseases, the prediction of the development of pathological conditions, and the planning of treatments and follow-up tests.

Translational Pediatrics

2024-01-01

Vol. 13 , num. 1, p. 146-163.

DOI : 10.21037/tp-23-184

A Spectral Ansatz for The Long-Time Homogenization of The Wave Equation

M. Duerinckx; A. Gloria; M. Ruf 

– Consider the wave equation with heterogeneous coefficients in the homogenization regime. At large times, the wave interacts in a nontrivial way with the heterogeneities, giving rise to effective dispersive effects. The main achievement of the present work is a new ansatz for the long-time two -scale expansion inspired by spectral analysis. Based on this spectral ansatz, we extend and refine all previous results in the field, proving homogenization up to optimal timescales with optimal error estimates, and covering all the standard assumptions on heterogeneities (both periodic and stationary random settings).

Journal De L Ecole Polytechnique-Mathematiques

2024-01-01

Vol. 11 .

DOI : 10.5802/jep.259

A Generalized Adjusted Min-Sum Decoder for 5G LDPC Codes: Algorithm and Implementation

Y. Ren; H. Harb; Y. Shen; A. Balatsoukas-Stimming; A. Burg 

5G New Radio (NR) has stringent demands on both performance and complexity for the design of low-density parity-check (LDPC) decoding algorithms and corresponding VLSI implementations. Furthermore, decoders must fully support the wide range of all 5G NR blocklengths and code rates, which is a significant challenge. In this paper, we present a high-performance and low-complexity LDPC decoder, tailor-made to fulfill the 5G requirements. First, to close the gap between belief propagation (BP) decoding and its approximations in hardware, we propose an extension of adjusted min-sum decoding, called generalized adjusted min-sum (GA-MS) decoding. This decoding algorithm flexibly truncates the incoming messages at the check node level and carefully approximates the non-linear functions of BP decoding to balance the error-rate and hardware complexity. Numerical results demonstrate that the proposed fixed-point GA-MS has only a minor gap of 0.1 dB compared to floating-point BP under various scenarios of 5G standard specifications. Secondly, we present a fully reconfigurable 5G NR LDPC decoder implementation based on GA-MS decoding. Given that memory occupies a substantial portion of the decoder area, we adopt multiple data compression and approximation techniques to reduce 42.2% of the memory overhead. The corresponding 28nm FD-SOI ASIC decoder has a core area of 1.823 mm(2) and operates at 895 MHz. It is compatible with all 5G NR LDPC codes and achieves a peak throughput of 24.42 Gbps and a maximum area efficiency of 13.40 Gbps/mm(2) at 4 decoding iterations.

Ieee Transactions On Circuits And Systems I-Regular Papers

2024-03-08

DOI : 10.1109/TCSI.2024.3368056

Surface properties of clinker phases and clay minerals characterized by inverse gas chromatography (IGC) and their link to reactivity

F. Zunino; M. Palacios; P. Bowen; K. Scrivener 

This paper presents a preliminary study of the characterization of the surface energy properties of clinker phases (C3S and C3A), kaolin and metakaolin by Inverse Gas Chromatography (IGC). For this, a reliable measurement methodology was developed. By looking at changes in the whole series of results (dispersive surface energy, specific polar interaction parameter, acid and base constants, morphology index, nanoroughness and adsorption energy distribution function), it is possible to discern changes between the same powders with different surface treatments. A promising correlation between surface properties and the reactivity of studied materials have been found. However, based on the IGC characterization, the increased reactivity of metakaolin compared to the raw kaolinite seems to be strongly linked to the change in local order rather than significant changes in the surface energetics, although a change in the acid/base nature of the surface has been observed.

Cement And Concrete Research

2024-02-16

Vol. 178 , p. 107458.

DOI : 10.1016/j.cemconres.2024.107458

Automated all-functionals infrared and Raman spectra

L. Bastonero; N. Marzari 

Infrared and Raman spectroscopies are ubiquitous techniques employed in many experimental laboratories, thanks to their fast and non-destructive nature able to capture materials’ features as spectroscopic fingerprints. Nevertheless, these measurements frequently need theoretical and computational support in order to unambiguously decipher and assign complex spectra. Linear-response theory provides an effective way to obtain the higher-order derivatives needed, but its applicability to modern exchange-correlation functionals and pseudopotential formalism remains limited. Here, we devise an automated, open-source, user-friendly approach based on density-functional theory and the electric-enthalpy functional to allow seamless calculation from first principles of infrared absorption and reflectivity, together with zone-center phonons, static dielectric tensor, and Raman spectra. By employing a finite-displacement and finite-field approach, we allow for the use of any functional, as well as an efficient treatment of large low-symmetry structures. Additionally, we propose a simple scheme for efficiently sampling the Brillouin zone at different electric fields. To demonstrate the capabilities of the present approach, we study ferroelectric LiNbO3 crystal as a paradigmatic example, and predict infrared and Raman spectra using various (semi)local, Hubbard corrected, and hybrid functionals. Our results also show how PBE0 and extended Hubbard functionals (PBEsol+U+V) yield for this case the best match in term of peak positions and intensities, respectively.

Npj Computational Materials

2024-03-15

Vol. 10 , num. 1, p. 55.

DOI : 10.1038/s41524-024-01236-3

Inhibition of urease-mediated ammonia production by 2-octynohydroxamic acid in hepatic encephalopathy

D. Evstafeva; F. Ilievski; Y. Bao; Z. Luo; B. Abramovic et al. 

Hepatic encephalopathy is a neuropsychiatric complication of liver disease which is partly associated with elevated ammonemia. Urea hydrolysis by urease-producing bacteria in the colon is often mentioned as one of the main routes of ammonia production in the body, yet research on treatments targeting bacterial ureases in hepatic encephalopathy is limited. Herein we report a hydroxamate-based urease inhibitor, 2-octynohydroxamic acid, exhibiting improved in vitro potency compared to hydroxamic acids that were previously investigated for hepatic encephalopathy. 2-octynohydroxamic acid shows low cytotoxic and mutagenic potential within a micromolar concentration range as well as reduces ammonemia in rodent models of liver disease. Furthermore, 2-octynohydroxamic acid treatment decreases cerebellar glutamine, a product of ammonia metabolism, in male bile duct ligated rats. A prototype colonic formulation enables reduced systemic exposure to 2-octynohydroxamic acid in male dogs. Overall, this work suggests that urease inhibitors delivered to the colon by means of colonic formulations represent a prospective approach for the treatment of hepatic encephalopathy.

Nature Communications

2024-03-12

Vol. 15 , num. 1, p. 2226.

DOI : 10.1038/s41467-024-46481-8

Sub-mm3 dimensional scaling of fully-integrated additively-fabricated microsupercapacitors for embedded energy storage applications

A. Hodaei; V. Subramanian 

Microsupercapacitors (MSCs) are attractive energy devices for applications in IoT, wireless sensors, and other microelectronic systems due to their small footprints. In this work, the dimensional scaling of fully-integrated additively-fabricated MSCs is systematically investigated. The dimensions of the MSCs are scaled by varying the length and cross-section of their electrodes to study their scalability to the mm(3) range, making them attractive for even chip-scale embedding. MSCs with the thickest electrodes demonstrate the highest values of capacitance and energy density, while MSCs with the thinnest electrodes show lower capacitance and energy densities, but deliver higher power densities. We observe that as expected, capacitance scales with dimensions. We observe excellent performance levels, including maximum areal capacitance of similar to 731.7 mF cm(-2), areal energy density of similar to 36.59 mu W h cm(-2), areal power density of similar to 2669.8 mW cm(-2), and similar to 95% capacitance retention after 17 000 cycles. These MSCs also show maximum volumetric capacitance, volumetric energy density, and volumetric power density of 8.7 F cm(-3), 0.436 mW h cm(-3), and 31.78 W cm(-3), respectively. Overall, these are the highest values reported to date for such systems. These results are achieved by utilizing novel chemistries for the components of the MSCs and from tuning their geometry. The electrodes of the MSCs are formed from a nanocomposite of edge-oxidized graphite oxide (EOGO)/cerium oxide nanoparticles to benefit from both electrical double-layer capacitance (EDLC) and pseudocapacitance, the electrolyte is a UV-curable hydrogel based on (poly(ethylene glycol) diacrylate (PEGDA) + LiCl + lithium phenyl-2,4,6-trimethylbenzoylphosphinate (LAP) + water), and the current collector is a silver paste. These MSCs are fully packaged and sealed by 3D printing a package using polycaprolactone (PCL) and depositing a UV-curable resin-based encapsulant. Our findings demonstrate that such devices can be scaled to mm(3) volumes while continuing to deliver excellent performance, making them attractive candidates for a range of embedded energy storage applications.

Journal Of Materials Chemistry A

2024-03-07

DOI : 10.1039/d3ta07159f

Muon Collider Forum report

K. M. Black; S. Jindariani; D. Li; F. Maltoni; P. Meade et al. 

A multi-TeV muon collider offers a spectacular opportunity in the direct exploration of the energy frontier. Offering a combination of unprecedented energy collisions in a comparatively clean leptonic environment, a high energy muon collider has the unique potential to provide both precision measurements and the highest energy reach in one machine that cannot be paralleled by any currently available technology. The topic generated a lot of excitement in Snowmass meetings and continues to attract a large number of supporters, including many from the early career community. In light of this very strong interest within the US particle physics community, Snowmass Energy, Theory and Accelerator Frontiers created a cross-frontier Muon Collider Forum in November of 2020. The Forum has been meeting on a monthly basis and organized several topical workshops dedicated to physics, accelerator technology, and detector R&D. Findings of the Forum are summarized in this report.

Journal Of Instrumentation

2024-02-01

Vol. 19 , num. 2, p. T02015.

DOI : 10.1088/1748-0221/19/02/T02015

Report A sensory-motor hand prosthesis with integrated thermal feedback

J. L. Muheim; F. Iberite; O. Akouissi; R. Monney; F. Morosato et al. 

Background: Recently, we reported the presence of phantom thermal sensations in amputees: thermal stimulation of specific spots on the residual arm elicited thermal sensations in their missing hands. Here, we exploit phantom thermal sensations via a standalone system integrated into a robotic prosthetic hand to provide real-time and natural temperature feedback. Methods: The subject (a male adult with unilateral transradial amputation) used the sensorized prosthesis to manipulate objects and distinguish their thermal properties. We tested his ability to discriminate between (1) hot, cold, and ambient temperature objects, (2) different materials (copper, glass, and plastic), and (3) artificial versus human hands. We also introduced the thermal box and block test (thermal BBT), a test to evaluate real-time temperature discrimination during standardized pick -and -place tasks. Findings: The subject performed all three discrimination tasks above chance level with similar accuracies as with his intact hand. Additionally, in all 15 sessions of the thermal BBT, he correctly placed more than half of the samples. Finally, the phantom thermal sensation was stable during the 13 recording sessions spread over 400 days. Conclusion: Our study paves the way for more natural hand prostheses that restore the full palette of sensations.

Med

2024-02-09

Vol. 5 , num. 2.

DOI : 10.1016/j.medj.2023.12.006

Lake surface cooling drives littoral-pelagic exchange of dissolved gases

T. Doda; C. L. Ramon; H. N. Ulloa; M. S. Brennwald; R. Kipfer et al. 

The extent of littoral influence on lake gas dynamics remains debated in the aquatic science community due to the lack of direct quantification of lateral gas transport. The prevalent assumption of diffusive horizontal transport in gas budgets fails to explain anomalies observed in pelagic gas concentrations. Here, we demonstrate through high-frequency measurements in a eutrophic lake that daily convective horizontal circulation generates littoral-pelagic advective gas fluxes one order of magnitude larger than typical horizontal fluxes used in gas budgets. These lateral fluxes are sufficient to redistribute gases at the basin-scale and generate concentration anomalies reported in other lakes. Our observations also contrast the hypothesis of pure, nocturnal littoral-to-pelagic exchange by showing that convective circulation transports gases such as oxygen and methane toward both the pelagic and littoral zones during the daytime. This study challenges the traditional pelagic-centered models of aquatic systems by showing that convective circulation represents a fundamental lateral transport mechanism to be integrated into gas budgets.

Science Advances

2024-01-24

Vol. 10 , num. 4, p. eadi0617.

DOI : 10.1126/sciadv.adi0617

Extremely Red Galaxies at z=5-9 with MIRI and NIRSpec: Dusty Galaxies or Obscured Active Galactic Nuclei?

G. Barro; P. G. Perez-Gonzalez; D. D. Kocevski; E. J. McGrath; J. R. Trump et al. 

We study a new population of extremely red objects (EROs) recently discovered by the James Webb Space Telescope (JWST) based on their NIRCam colors F277W – F444W > 1.5 mag. We find 37 EROs in the Cosmic Evolution Early Release Science Survey (CEERS) field with F444W < 28 mag and photometric redshifts between 5 < z < 7, with median z=6.9(-1.6)(+1.0) . Surprisingly, despite their red long-wavelength colors, these EROs have blue short-wavelength colors (F150W - F200W similar to 0 mag) indicative of bimodal spectral energy distributions (SEDs) with a red, steep slope in the rest-frame optical, and a blue, flat slope in the rest-frame UV. Moreover, all these EROs are unresolved, point-like sources in all NIRCam bands. We analyze the SEDs of eight of them with MIRI and NIRSpec observations using stellar population models and active galactic nucleus (AGN) templates. We find that dusty galaxies or obscured AGNs provide similarly good SED fits but different stellar properties: massive and dusty, logM(star)/M-circle dot similar to 10 and A(V) greater than or similar to 3 mag, or low mass and obscured, logM(star)/M-circle dot similar to 7.5 and A(V) similar to 0 mag, hosting an obscured quasi-stellar object (QSO). SED modeling does not favor either scenario, but their unresolved sizes are more suggestive of AGNs. If any EROs are confirmed to have logM(star)/M-circle dot greater than or similar to 10.5, it would increase the pre-JWST number density at z > 7 by up to a factor similar to 60. Similarly, if they are QSOs with luminosities in the L-bol > 10(45-46) erg s(-1) range, their number would exceed that of bright blue QSOs by more than three orders of magnitude. Additional photometry at mid-infrared wavelengths will reveal the true nature of the red continuum emission in these EROs and will place this puzzling population in the right context of galaxy evolution.

Astrophysical Journal

2024-03-01

Vol. 963 , num. 2, p. 128.

DOI : 10.3847/1538-4357/ad167e

EXPANDING AMJ’S MANUSCRIPT PORTFOLIO: RESEARCH METHODS ARTICLES DESIGNED TO ADVANCE THEORY AND SPAN BOUNDARIES

M. Gruber; P. Bliese 

Academy Of Management Journal

2024-02-01

Vol. 67 , num. 1, p. 1-4.

DOI : 10.5465/amj.2024.4001

Validation of the Scientific Program for the Dark Energy Spectroscopic Instrument

A. G. Adame; J. Aguilar; S. Ahlen; S. Alam; G. Aldering et al. 

The Dark Energy Spectroscopic Instrument (DESI) was designed to conduct a survey covering 14,000 deg(2) over 5 yr to constrain the cosmic expansion history through precise measurements of baryon acoustic oscillations (BAO). The scientific program for DESI was evaluated during a 5 month survey validation (SV) campaign before beginning full operations. This program produced deep spectra of tens of thousands of objects from each of the stellar Milky Way Survey (MWS), Bright Galaxy Survey (BGS), luminous red galaxy (LRG), emission line galaxy (ELG), and quasar target classes. These SV spectra were used to optimize redshift distributions, characterize exposure times, determine calibration procedures, and assess observational overheads for the 5 yr program. In this paper, we present the final target selection algorithms, redshift distributions, and projected cosmology constraints resulting from those studies. We also present a One-Percent Survey conducted at the conclusion of SV covering 140 deg(2) using the final target selection algorithms with exposures of a depth typical of the main survey. The SV indicates that DESI will be able to complete the full 14,000 deg(2) program with spectroscopically confirmed targets from the MWS, BGS, LRG, ELG, and quasar programs with total sample sizes of 7.2, 13.8, 7.46, 15.7, and 2.87 million, respectively. These samples will allow exploration of the Milky Way halo, clustering on all scales, and BAO measurements with a statistical precision of 0.28% over the redshift interval z < 1.1, 0.39% over the redshift interval 1.1 < z < 1.9, and 0.46% over the redshift interval 1.9 < z < 3.5.

Astronomical Journal

2024-02-01

Vol. 167 , num. 2, p. 62.

DOI : 10.3847/1538-3881/ad0b08

Multigraded algebras and multigraded linear series

Y. Cid-Ruiz; F. Mohammadi; L. Monin 

This paper is devoted to the study of multigraded algebras and multigraded linear series. For an Ns$\mathbb {N}<^>s$-graded algebra A$A$, we define and study its volume function FA:N+s -> R$F_A:\mathbb {N}_+<^>s\rightarrow \mathbb {R}$, which computes the asymptotics of the Hilbert function of A$A$. We relate the volume function FA$F_A$ to the volume of the fibers of the global Newton-Okounkov body Delta(A)$\Delta (A)$ of A$A$. Unlike the classical case of standard multigraded algebras, the volume function FA$F_A$ is not a polynomial in general. However, in the case when the algebra A$A$ has a decomposable grading, we show that the volume function FA$F_A$ is a polynomial with nonnegative coefficients. We then define mixed multiplicities in this case and provide a full characterization for their positivity. Furthermore, we apply our results on multigraded algebras to multigraded linear series. Our work recovers and unifies recent developments on mixed multiplicities. In particular, we recover results on the existence of mixed multiplicities for (not necessarily Noetherian) graded families of ideals and on the positivity of the multidegrees of multiprojective varieties.

Journal Of The London Mathematical Society-Second Series

2024-03-01

Vol. 109 , num. 3, p. e12880.

DOI : 10.1112/jlms.12880

Flood, farms and credit: The role of branch banking in the era of climate change

P. Abedifar; S. J. Kashizadeh; S. Ongena 

Using Iran’s unexpected flood in April 2019 as a natural experiment, we show that local branches bridge the time gap between the disaster and governmental aids by immediately increasing their lending for two months following the flood. Analyzing proprietary information on more than 53,000 farmers, we find that farmers with a stronger relationship with their branch – particularly younger and females – are more likely to receive a recovery loan. Our findings underscore that despite recent technological advancements, relationship -based branch banking is still important for agrarian societies during catastrophic events.

Journal Of Corporate Finance

2024-02-09

Vol. 85 , p. 102544.

DOI : 10.1016/j.jcorpfin.2024.102544

Nanostructure and Optical Property Tailoring of Zinc Tin Nitride Thin Films through Phenomenological Decoupling: A Pathway to Enhanced Control

C. Hain; K. Wieczerzak; D. Casari; A. Sharma; A. Xomalis et al. 

This work addresses the need for precise control of thin film sputtering processes to enable thin film material tailoring on the example of zinc tin nitride (ZTN) thin films deposited via microwave plasma-assisted high power reactive magnetron sputtering (MAR-HiPIMS). The applied in situ diagnostic techniques (Langmuir probe and energy-resolved time-of-flight mass spectrometry) supported monitoring changes in the deposition environment with respect to microwave (MW) power. During MAR-HiPIMS, the presence of nitride ions in the gas phase (ZnN+, ZnN2+, SnN+, SnN2+) was detected. This indicates that the MW plasma facilitated their production, as opposed to pure R-HiPIMS. Additionally, MW plasma caused post-ionisation of sputtered atoms and reduced the overall energy-per-charge range of incoming charged species. By varying the MW power and substrate biasing, films with comparable chemical compositions (approximately Zn0.92Sn1.08N2) but different structures, ranging from polycrystalline to preferentially textured, were successfully produced. The application of density functional theory (DFT) further enabled the relationship between the lattice parameters and the optical properties of ZTN to be explored, where the material’s optical anisotropy nature was determined. It was found that despite considerable differences in crystallinity, the changes induced in the lattice parameters were subangstrom, causing only minor changes in the final optical properties of ZTN.

Acs Applied Nano Materials

2024-03-11

DOI : 10.1021/acsanm.3c06178

Dual-shot approach for polarization retrieval through a scattering medium

A. Roy; R. Parvin; A. Karmakar; A. Mandal; R. K. Singh et al. 

A dual-shot technique based on the field basis addition of two statistically independent speckle patterns is developed to recover an input polarization through a scattering layer. It is proposed theoretically, and demonstrated both numerically and experimentally that by tuning the linear polarization orientation of the reference speckle pattern to 0 degrees and 45 degrees w.r.t. the x-axis, polarization retrieval of an object beam through a scattering layer can be achieved by measuring the degree of polarization of the superposed speckle pattern. The proposed technique can have a wide range of applications in polarization sensing and biomedical imaging.

Journal Of Optics

2024-04-01

Vol. 26 , num. 4, p. 045608.

DOI : 10.1088/2040-8986/ad2ed9

Flux correlators and semiclassics

E. C. Firat; A. Monin; R. Rattazzi; M. T. Walters 

We consider correlators for the flux of energy and charge in the background of operators with large global U(1) charge in conformal field theory (CFT). It has recently been shown that the corresponding Euclidean correlators generically admit a semiclassical description in terms of the effective field theory (EFT) for a conformal superfluid. We adapt the semiclassical description to Lorentzian observables and compute the leading large charge behavior of the flux correlators in general U(1) symmetric CFTs. We discuss the regime of validity of the large charge EFT for these Lorentzian observables and the subtleties in extending the EFT approach to subleading corrections. We also consider the Wilson-Fisher fixed point in d = 4 – epsilon dimensions, which offers a specific weakly coupled realization of the general setup, where the subleading corrections can be systematically computed without relying on an EFT.

Journal Of High Energy Physics

2024-03-12

num. 3, p. 67.

DOI : 10.1007/JHEP03(2024)067

Dislocation Hardening in a New Manufacturing Route of Ferritic Oxide Dispersion-Strengthened Fe-14Cr Cladding Tube

F. Salliot; A. Borbely; D. Sornin; R. E. Loge; G. Spartacus et al. 

The microstructure evolution associated with the cold forming sequence of an Fe-14Cr-1W-0.3Ti-0.3Y2O3 grade ferritic stainless steel strengthened by dispersion of nano oxides (ODS) was investigated. The material, initially hot extruded at 1100 degrees C and then shaped into cladding tube geometry via HPTR cold pilgering, shows a high microstructure stability that affects stress release heat treatment efficiency. Each step of the process was analyzed to better understand the microstructure stability of the material. Despite high levels of stored energy, heat treatments, up to 1350 degrees C, do not allow for recrystallization of the material. The Vickers hardness shows significant variations along the manufacturing steps. Thanks to a combination of EBSD and X-ray diffraction measurements, this study gives a new insight into the contribution of statistically stored dislocation (SSD) recovery on the hardness evolution during an ODS steel cold forming sequence. SSD density, close to 4.1015 m-2 after cold rolling, drops by only an order of magnitude during heat treatment, while geometrically necessary dislocation (GND) density, close to 1.1015 m-2, remains stable. Hardness decrease during heat treatments appears to be controlled only by the evolution of SSD.

Materials

2024-03-01

Vol. 17 , num. 5, p. 1146.

DOI : 10.3390/ma17051146

Collimation simulations for the FCC-ee

A. Abramov; G. Broggi; R. Bruce; F. Carlier; M. Hofer et al. 

The collimation system of the Future Circular Collider, operating with leptons (FCC-ee), must protect not only the experiments against backgrounds, but also the machine itself from beam losses. With a 17.8 MJ stored energy of the electron and positron beams, they are highly destructive, and beam losses risk to cause damage or a quench of superconducting elements. Accurate collimation simulation tools and models are needed to design the collimation system and optimize the collimation performance, including magnetic tracking, synchrotron radiation and optics tapering, as well as particle -matter interactions. As no existing code was found that incorporated all these features, a new simulation software tool has been developed. The tool is based on an interface between a particle tracking engine, pyAT or Xtrack, and a Monte -Carlo particle -matter interaction engine for collimator scattering, BDSIM, which is based on Geant4. Results from a simulation of edge scattering from a beam halo collimator in the FCC-ee are presented to demonstrate the capabilities of the tool.

Journal Of Instrumentation

2024-02-01

Vol. 19 , num. 2, p. T02004.

DOI : 10.1088/1748-0221/19/02/T02004

Impact of anthropogenic emission control in reducing future PM2.5 concentrations and the related oxidative potential across different regions of China

J. Liu; Z. Ye; J. H. Christensen; S. Dong; C. Geels et al. 

Affected by both future anthropogenic emissions and climate change, future prediction of PM2.5 and its Oxidative Potential (OP) distribution is a significant challenge, especially in developing countries like China. To overcome this challenge, we estimated historical and future PM2.5 concentrations and associated OP using the Danish Eulerian Hemispheric Model (DEHM) system with meteorological input from WRF weather forecast model. Considering different future socio-economic pathways and emission scenario assumptions, we quantified how the contribution from various anthropogenic emission sectors will change under these scenarios. Results show that compared to the CESM_SSP2-4.5_CLE scenario (based on moderate radiative forcing and Current Legislation Emission), the CESM_SSP1-2.6_MFR scenario (based on sustainability development and Maximum Feasible Reductions) is projected to yield greater environmental and health benefits in the future. Under the CESM_SSP1-2.6_MFR scenario, annual average PM2.5 concentrations (OP) are expected to decrease to 30 jig m- 3 (0.8 nmol min -1 m- 3) in almost all regions by 2030, which will be 65 % (67 %) lower than that in 2010. From a long-term perspective, it is anticipated that OP in the Fen -Wei Plain region will experience the maximum reduction (82.6 %) from 2010 to 2049. Largely benefiting from the effective control of PM2.5 in the region, it has decreased by 82.1 %. Crucially, once emission reduction measures reach a certain level (in 2040), further reductions become less significant. This study also emphasized the significant role of secondary aerosol formation and biomass -burning sources in influencing OP during both historical and future periods. In different scenarios, the reduction range of OP from 2010 to 2049 is estimated to be between 71 % and 85 % by controlling precursor emissions involved in secondary aerosol formation and emissions from biomass burning. Results indicate that strengthening the control of anthropogenic emissions in various regions are key to achieving air quality targets and safeguarding human health in the future.

Science Of The Total Environment

2024-03-25

Vol. 918 , p. 170638.

DOI : 10.1016/j.scitotenv.2024.170638

Processing factors affecting roughness, optical and mechanical properties of nanocellulose films for optoelectronics

J. J. Kaschuk; Y. Al Haj; J. V. Garcia; A. Kamppinen; O. J. Rojas et al. 

This work aims to understand how nanocellulose (NC) processing can modify the key characteristics of NC films to align with the main requirements for high-performance optoelectronics. The performance of these devices relies heavily on the light transmittance of the substrate, which serves as a mechanical support and optimizes light interactions with the photoactive component. Critical variables that determine the optical and mechanical properties of the films include the morphology of cellulose nanofibrils (CNF), as well as the concentration and turbidity of the respective aqueous suspensions. This study demonstrates that achieving high transparency was possible by reducing the grammage and adjusting the drying temperature through hot pressing. Furthermore, the use of modified CNF, specifically carboxylated CNF, resulted in more transparent films due to a higher nanosized fraction and lower turbidity. The mechanical properties of the films depended on their structure, homogeneity (spatial uniformity of local grammage), and electrokinetic factors, such as the presence of electrostatic charges on CNF. Additionally, we investigated the angle-dependent transmittance of the CNF films, since solar devices usually operate under indirect light. This work demonstrates the importance of a systematic approach to the optimization of cellulose films, providing valuable insight into the optoelectronic field.

Carbohydrate Polymers

2024-02-07

Vol. 332 , p. 121877.

DOI : 10.1016/j.carbpol.2024.121877

Weak gravitational lensing measurements of Abell 2744 using JWST and shear measurement algorithm pyRRG-JWST

D. R. Harvey; R. Massey 

We update the publicly available weak lensing shear measurement algorithm pyRRG for the JWST, and apply it to UNCOVER DR1 imaging of galaxy cluster Abell 2744. At short wavelengths (<2.5 mu m), shear measurements are consistent between independent observations through different JWST bandpasses, and calibrated within 1.5 per cent of those from the Hubble Space Telescope. At longer wavelengths, shear is underestimated by similar to 5 per cent, probably due to coarser pixellization. We model the spatially varying point spread function using WebbPSF, whose moments are within 0.05 of real stars near the centre of the mosaic, where there are sufficient stars to also generate an empirical model. We measure shear from up to 162 galaxies arcmin(-2) to derive a map of dark plus baryonic mass with 12 arcsec (55 kpc) spatial resolution. All code, catalogues, and maps are available from https://github.com/davidharvey1986/pyRRG.

Monthly Notices Of The Royal Astronomical Society

2024-03-06

Vol. 529 , num. 2, p. 802-809.

DOI : 10.1093/mnras/stae370

The CRL5-SPSB3 ubiquitin ligase targets nuclear cGAS for degradation

P. Xu; Y. Liu; C. Liu; B. Guey; L. Li et al. 

Cyclic GMP-AMP synthase (cGAS) senses aberrant DNA during infection, cancer and inflammatory disease, and initiates potent innate immune responses through the synthesis of 2 ‘ 3 ‘-cyclic GMP-AMP (cGAMP)1-7. The indiscriminate activity of cGAS towards DNA demands tight regulatory mechanisms that are necessary to maintain cell and tissue homeostasis under normal conditions. Inside the cell nucleus, anchoring to nucleosomes and competition with chromatin architectural proteins jointly prohibit cGAS activation by genomic DNA8-15. However, the fate of nuclear cGAS and its role in cell physiology remains unclear. Here we show that the ubiquitin proteasomal system (UPS) degrades nuclear cGAS in cycling cells. We identify SPSB3 as the cGAS-targeting substrate receptor that associates with the cullin-RING ubiquitin ligase 5 (CRL5) complex to ligate ubiquitin onto nuclear cGAS. A cryo-electron microscopy structure of nucleosome-bound cGAS in a complex with SPSB3 reveals a highly conserved Asn-Asn (NN) minimal degron motif at the C terminus of cGAS that directs SPSB3 recruitment, ubiquitylation and cGAS protein stability. Interference with SPSB3-regulated nuclear cGAS degradation primes cells for type I interferon signalling, conferring heightened protection against infection by DNA viruses. Our research defines protein degradation as a determinant of cGAS regulation in the nucleus and provides structural insights into an element of cGAS that is amenable to therapeutic exploitation.|The ubiquitin proteasomal system degrades nuclear cGAS in cycling cells.

Nature

2024-02-28

DOI : 10.1038/s41586-024-07112-w

Wandering principal optical axes in van der Waals triclinic materials

G. A. Ermolaev; K. V. Voronin; A. N. Toksumakov; D. V. Grudinin; I. M. Fradkin et al. 

Nature is abundant in material platforms with anisotropic permittivities arising from symmetry reduction that feature a variety of extraordinary optical effects. Principal optical axes are essential characteristics for these effects that define light-matter interaction. Their orientation – an orthogonal Cartesian basis that diagonalizes the permittivity tensor, is often assumed stationary. Here, we show that the low-symmetry triclinic crystalline structure of van der Waals rhenium disulfide and rhenium diselenide is characterized by wandering principal optical axes in the space-wavelength domain with above pi/2 degree of rotation for in-plane components. In turn, this leads to wavelength-switchable propagation directions of their waveguide modes. The physical origin of wandering principal optical axes is explained using a multi-exciton phenomenological model and ab initio calculations. We envision that the wandering principal optical axes of the investigated low-symmetry triclinic van der Waals crystals offer a platform for unexplored anisotropic phenomena and nanophotonic applications.|Principal optical axes define light-matter interactions in crystals and they are usually assumed to be stationary. Here, the authors report the observation of wavelength-dependent principal optical axes in ternary van der Waals crystals (ReS2 and ReSe2), leading to wavelength-switchable propagation directions of their waveguide modes.

Nature Communications

2024-03-06

Vol. 15 , num. 1, p. 1552.

DOI : 10.1038/s41467-024-45266-3

Toward responsible face datasets: modeling the distribution of a disentangled latent space for sampling face images from demographic groups

P. Rahimi; C. Ecabert; S. Marcel 

Recently, it has been exposed that some modern facial recognition systems could discriminate specific demographic groups and may lead to unfair attention with respect to various facial attributes such as gender and origin. The main reason are the biases inside datasets, unbalanced demographics, used to train theses models. Unfortunately, collecting a large-scale balanced dataset with respect to various demographics is impracticable. In this paper, we investigate as an alternative the generation of a balanced and possibly bias-free synthetic dataset that could be used to train, to regularize or to evaluate deep learning-based facial recognition models. We propose to use a simple method for modeling and sampling a disentangled projection of a StyleGAN latent space to generate any combination of demographic groups (e.g. hispanic). Our experiments show that we can synthesis any combination of demographic groups effectively and the identities are different from the original training dataset. We also released the source code (1).

2023 Ieee International Joint Conference On Biometrics, Ijcb

2023-01-01

IEEE International Joint Conference on Biometrics (IJCB), Ljubljana, SLOVENIA, SEP 25-28, 2023.

DOI : 10.1109/IJCB57857.2023.10449046

Validation and Application of Hysteresis Loss Model for HTS Stacks and Conductors for Fusion Applications

A. Zappatore; N. Bykovskiy; G. De Marzi 

Numerous conductor designs for pulsed magnets based on High Temperature Superconductors (HTS), featuring stacks of tapes are currently being proposed. A major contribution to the AC losses is expected to be given by hysteresis losses. Several numerical models have been developed for the computation of hysteresis losses, however the lack of experimental data in conditions relevant for the coil operation did not allow extensive validation of those models. Here, we present the AC loss tests performed on HTS conductor with transport current in conditions of partial or full field penetration. After the validation of a numerical model on those data, we analyze the losses expected during the operation of the EU DEMO CS coil, assessing possible analytical formulations for the calculation of hysteresis losses in DEMO-relevant conditions.

Ieee Transactions On Applied Superconductivity

2024-08-01

Vol. 34 , num. 5, p. 4704105.

DOI : 10.1109/TASC.2024.3369584

Machine Learning Security Against Data Poisoning: Are We There Yet?

A. E. Cina; K. Grosse; A. Demontis; B. Biggio; F. Roli et al. 

Poisoning attacks compromise the training data utilized to train machine learning (ML) models, diminishing their overall performance, manipulating predictions on specific test samples, and implanting backdoors. This article thoughtfully explores these attacks while discussing strategies to mitigate them through fundamental security principles or by implementing defensive mechanisms tailored for ML.

Computer

2024-03-01

Vol. 57 , num. 3, p. 26-34.

DOI : 10.1109/MC.2023.3299572

An Optimal Control Formulation of Tool Affordance Applied to Impact Tasks

B. Ti; Y. Gao; J. Zhao; S. Calinon 

Humans use tools to complete impact-aware tasks, such as hammering a nail or playing tennis. The postures adopted to use these tools can significantly influence the performance of these tasks, where the force or velocity of the hand holding a tool plays a crucial role. The underlying motion planning challenge consists of grabbing the tool in preparation for the use of this tool with an optimal body posture. Directional manipulability describes the dexterity of force and velocity in a joint configuration along a specific direction. In order to take directional manipulability and tool affordances into account, we apply an optimal control method combining iterative linear quadratic regulator with the alternating direction method of multipliers. Our approach considers the notion of tool affordances to solve motion planning problems, by introducing a cost based on directional velocity manipulability. The proposed approach is applied to impact tasks in simulation and on a real 7-axis robot, specifically in a nail-hammering task with the assistance of a pilot hole. Our comparison study demonstrates the importance of maximizing directional manipulability in impact-aware tasks.

Ieee Transactions On Robotics

2024-01-01

Vol. 40 , p. 1966-1982.

DOI : 10.1109/TRO.2024.3365993

Hosing of a Long Relativistic Particle Bunch in Plasma

T. Nechaeva; L. Verra; J. Pucek; L. Ranc; M. Bergamaschi et al. 

Experimental results show that hosing of a long particle bunch in plasma can be induced by wakefields driven by a short, misaligned preceding bunch. Hosing develops in the plane of misalignment, selfmodulation in the perpendicular plane, at frequencies close to the plasma electron frequency, and are reproducible. Development of hosing depends on misalignment direction, its growth on misalignment extent and on proton bunch charge. Results have the main characteristics of a theoretical model, are relevant to other plasma -based accelerators and represent the first characterization of hosing.

Physical Review Letters

2024-02-13

Vol. 132 , num. 7, p. 075001.

DOI : 10.1103/PhysRevLett.132.075001

SPAD Developed in 55 nm Bipolar-CMOS-DMOS Technology Achieving Near 90% Peak PDP

W-Y. Ha; E. Park; D. Eom; H-S. Park; F. Gramuglia et al. 

We present a single-photon avalanche diode (SPAD) developed in 55 nm bipolar-CMOS-DMOS (BCD) technology, which achieves high photon detection probability (PDP) while its breakdown voltage is lower than 20 V. To enhance the PDP performance, the SPAD junction is optimized with lightly-doped-drain and high-voltage-well layers which are provided in the BCD process. In addition, the dielectric layers over the SPAD are properly etched to reduce multilayer reflections so that the photon collection efficiency can be maximized. The SPAD achieves a peak PDP of 89.4% at 450 nm wavelength with the excess bias voltage of 7 V, while its breakdown voltage is 16.1 V. At the same bias condition, the device shows a dark count rate (DCR) of 38.2 cps/mu m(2). It also achieves a timing jitter of 55 ps at 940 nm with the 7 V excess bias. This new high-performance SPAD implemented in such an advanced node BCD technology operating at a low breakdown voltage is expected to have a major impact on several single-photon applications, especially biomedical sensing and imaging.

Ieee Journal Of Selected Topics In Quantum Electronics

2024-01-01

Vol. 30 , num. 1, p. 3800410.

DOI : 10.1109/JSTQE.2023.3303678

A Gradient-Gated SPAD Array for Non-Line-of-Sight Imaging

J. Zhao; F. Gramuglia; P. Keshavarzian; E-H. Toh; M. Tng et al. 

Time-resolved non-line-of-sight (NLOS) imaging based on single-photon avalanche diode (SPAD) detectors have demonstrated impressive results in recent years. To acquire adequate number of indirect photons from a hidden scene in the presence of overwhelming amount of early-arrival photons, a single-gated SPAD is widely employed to mitigate pile-up. However, additional prior knowledge of the hidden range and relay surface profile are required to preset the gating position and implement the reconstruction. With this work, we propose a gradient-gated technique to alleviate these shortcomings (pile-up and prior knowledge) in NLOS imaging with the development of a 6 x 6 SPAD array fabricated in a standard 55-nm Bipolar-CMOS-DMOS (BCD) technology. The SPAD sensor includes a delay-locked loop (DLL) block, a gating generator and a pixel array, which can be flexibly configured to free-running, single-gating and gradient-gating modes. The rise time of the gates is less than 450 ps (from 10% to 90%). In gradient-gating mode, the interval time between adjacent gates can be configured from 300 ps to 2 ns. In single-gating mode, the minimum gate window is measured below 5 ns. We demonstrated the sensor in a confocal NLOS imaging system that reconstructs hidden scenes with both retroreflective and diffuse objects. The presented scheme enables the development of calibration-free NLOS imaging modality for practical applications.

Ieee Journal Of Selected Topics In Quantum Electronics

2024-01-01

Vol. 30 , num. 1, p. 8000110.

DOI : 10.1109/JSTQE.2023.3283150

A 73% Peak PDP Single-Photon Avalanche Diode Implemented in 110 nm CIS Technology With Doping Compensation

M-J. Lee; U. Karaca; E. Kizilkan; C. Bruschini; E. Charbon 

In this article, we present 10 mu m diameter SPADs fabricated in 110 nm CIS technology based on an N (+) /HVPW junction, with enhanced sensitivity at short wavelengths. To reduce tunneling noise due to the highly-doped layers in the process, a doping compensation technique is used, which allows to adjust the doping profile of the HVPW. Thanks to this technique, DCR is reduced by a factor of 24 at 2 V excess bias voltage when compared to non-compensated devices. Furthermore, the maximum achievable PDP is enhanced by 49% thanks to the much lower DCR leading to a PDP of 73%, the highest ever reported at 440 nm, while the DCR is 12.5 cps/ mu m(2) , all at the 5 V excess bias. Since the junction is formed very close to the surface, the SPAD has excellent sensitivity in the UV spectrum, with a PDP of 43% at a wavelength of 350 nm. The proposed SPAD also achieves a PDP of 7% with a timing jitter of 68 ps at 850 nm at 5 V excess bias, which makes the device very useful for RGB-Z (RGB-D) sensors.

Ieee Journal Of Selected Topics In Quantum Electronics

2024-01-01

Vol. 30 , num. 1, p. 3800310.

DOI : 10.1109/JSTQE.2023.3288674

Data-driven statistical optimization of a groundwater monitoring network

M. Meggiorin; N. Naranjo-Fernandez; G. Passadore; A. Sottani; G. Botter et al. 

We propose a comparative study of three different methods aimed at optimizing existing groundwater monitoring networks. Monitoring piezometric heads in subsurface porous formations is crucial at regional scales to properly characterize the relevant subsurface hydrology and to assess water resources management and protection. Here, the basic idea to optimize the efficiency of existing gauging networks is to identify correlated timeseries to guide the removal of redundant measurement sites. Three data -driven statistical methods are compared: Oscillation correlation (OC) hierarchical (HC) and timeseries clustering (TSC). These methods are applied to a hydrogeologically complex groundwater system within the Bacchiglione basin (IT). Results suggest that: (i) the OC method returns well -gathered correlation clusters while being fast and easy to apply; (ii) HC underpins more spread clusters but it is useful when considering multiple groundwater characteristics; and (iii) TSC proves the best performing method for the study area, at the cost of being the most complex to implement. The latter identified 30 out of 59 existing timeseries as redundant, i.e., where sensors might be relocated elsewhere thus gaining in information quality (or else simply saving money if dismissed). We also suggest that the microscale of a random piezometric head field is a suitable measure to extract from data the monitoring frequency of manual measures in dismissed locations.

Journal Of Hydrology

2024-02-04

Vol. 631 , p. 130667.

DOI : 10.1016/j.jhydrol.2024.130667

Finding Paths for Explainable MOOC Recommendation: A Learner Perspective

J. A. Frej; N. Shah; M. Knezevic; T. Nazaretsky; T. Kaser 

The increasing availability of Massive Open Online Courses (MOOCs) has created a necessity for personalized course recommendation systems. These systems often combine neural networks with Knowledge Graphs (KGs) to achieve richer representations of learners and courses. While these enriched representations allow more accurate and personalized recommendations, explainability remains a significant challenge which is especially problematic for certain domains with significant impact such as education and online learning. Recently, a novel class of recommender systems that uses reinforcement learning and graph reasoning over KGs has been proposed to generate explainable recommendations in the form of paths over a KG. Despite their accuracy and interpretability on e-commerce datasets, these approaches have scarcely been applied to the educational domain and their use in practice has not been studied. In this work, we propose an explainable recommendation system for MOOCs that uses graph reasoning. To validate the practical implications of our approach, we conducted a user study examining user perceptions of our new explainable recommendations. We demonstrate the generalizability of our approach by conducting experiments on two educational datasets: COCO and Xuetang.

Fourteenth International Conference On Learning Analytics & Knowledge, Lak 2024

2024-01-01

14th Annual International Conference on Learning Analytics and Knowledge (LAK) – Learning Analytics in the Age of Artificial Intelligence, Kyoto, JAPAN, MAR 18-22, 2024.

p. 426-437

DOI : 10.1145/3636555.3636898

Federated Linear Bandit Learning via Over-the-air Computation

J. Wang; Y. Jiang; X. Liu; T. Wang; Y. Shi 

In this paper, we investigate federated contextual linear bandit learning within a wireless system that comprises a server and multiple devices. Each device interacts with the environment, selects an action based on the received reward, and sends model updates to the server. The primary objective is to minimize cumulative regret across all devices within a finite time horizon. To reduce the communication overhead, devices communicate with the server via over-the-air computation (AirComp) over noisy fading channels, where the channel noise may distort the signals. In this context, we propose a customized federated linear bandits scheme, where each device transmits an analog signal, and the server receives a superposition of these signals distorted by channel noise. A rigorous mathematical analysis is conducted to determine the regret bound of the proposed scheme. Both theoretical analysis and numerical experiments demonstrate the competitive performance of our proposed scheme in terms of regret bounds in various settings.

Ieee Conference On Global Communications, Globecom

2023-01-01

IEEE Conference on Global Communications (IEEE GLOBECOM) – Intelligent Communications for Shared Prosperity, Kuala Lumpur, MALAYSIA, DEC 04-08, 2023.

p. 1363-1368

DOI : 10.1109/GLOBECOM54140.2023.10437441

Governing Outer Space as a Commons is Critical for Addressing Commons on Earth

M. A. Janssen; X-S. Yap 

Editorial for the special issue on “Commons in Space”.

International Journal Of The Commons

2024-01-01

Vol. 18 , num. 1, p. 32-38.

DOI : 10.5334/ijc.1378

Fungal mycelia: From innovative materials to promising products: Insights and challenges

W. Sun 

In transitioning toward a sustainable economy, mycelial materials are recognized for their adaptability, biocompatibility, and eco-friendliness. This paper updates the exploration of mycelial materials, defining their scope and emphasizing the need for precise terminology. It discusses the importance of mycelial type and characteristics, reviews existing and future research directions, and highlights the need for improved understanding, clarity, and standardization in this emerging field, aiming to foster and guide future research and development in sustainable material science.

Biointerphases

2024-01-01

Vol. 19 , num. 1, p. 018502.

DOI : 10.1116/6.0003441

High-Throughput and Flexible Belief Propagation List Decoder for Polar Codes

Y. Ren; Y. Shen; L. Zhang; A. T. Kristensen; A. Balatsoukas-Stimming et al. 

Due to its high parallelism, belief propagation (BP)decoding is amenable to high-throughput applications and thusrepresents a promising solution for the ultra-high peak datarate required by future communication systems. To bridge theperformance gap compared to the widely used successive cancel-lation list (SCL) decoding algorithm, BP list (BPL) decoding forpolar codes extends candidate codeword exploration via multiplepermuted factor graphs (PFGs) to improve the error-correctingperformance of BP decoding. However, it is a significant challengeto design a unified and flexible BPL hardware architecture thatsupports various PFGs and code configurations. In this paper,we present the first VLSI implementation of a BPL decoder forpolar codes that overcomes this implementation challenge with ahardware-friendly algorithm for on-the-fly flexible permutations.First, we introduce a sequential generation (SG) algorithm toobtain a near-optimal PFG set. Additionally, we demonstratethat any permutation can be decomposed into a combination ofmultiple fixed routings, and design a low-complexity permutationnetwork to generate graphs in an on-the-fly fashion. Our BPLdecoder has a low decoding latency by executing decoding andpermutation generation in parallel and supports arbitrary listsizes without area overhead. Experimental results based on 28nmFD-SOI technology show that for length-1024 polar codes witha code rate of one-half, our BPL decoder with 32 PFGs exhibitssimilar error-correcting performance to SCL with a list size of 4and achieves an average throughput of 25.63 Gbps and an areaefficiency of 29.46 Gbps/mm2, which is 1.82xand 4.33xfasterthan the state-of-the-art BP flip and SCL decoders, respectively

Ieee Transactions On Signal Processing

2024-01-01

Vol. 72 , p. 1158-1174.

DOI : 10.1109/TSP.2024.3361073

Deep learning approach for identification of H II regions during reionization in 21-cm observations – II. Foreground contamination

M. Bianco; S. K. Giri; D. Prelogovic; T. Chen; F. G. Mertens et al. 

The upcoming Square Kilometre Array Observatory will produce images of neutral hydrogen distribution during the epoch of reionization by observing the corresponding 21-cm signal. However, the 21-cm signal will be subject to instrumental limitations such as noise and galactic foreground contamination that pose a challenge for accurate detection. In this study, we present the SegU-Net v2 framework, an enhanced version of our convolutional neural network, built to identify neutral and ionized regions in the 21-cm signal contaminated with foreground emission. We trained our neural network on 21-cm image data processed by a foreground removal method based on Principal Component Analysis achieving an average classification accuracy of 71 per cent between redshift z = 7 and 11. We tested SegU-Net v2 against various foreground removal methods, including Gaussian Process Regression, Polynomial Fitting, and Foreground-Wedge Removal. Results show comparable performance, highlighting SegU-Net v2’s independence on these pre-processing methods. Statistical analysis shows that a perfect classification score with AUC = 95 is possible for 8 < z < 10. While the network prediction lacks the ability to correctly identify ionized regions at higher redshift and differentiate well the few remaining neutral regions at lower redshift due to low contrast between 21-cm signal, noise, and foreground residual in images. Moreover, as the photon sources driving reionization are expected to be located inside ionized regions, we show that SegU-Net v2 can be used to correctly identify and measure the volume of isolated bubbles with V-ion > (10cmpc)(3 )at z > 9, for follow-up studies with infrared/optical telescopes to detect these sources.

Monthly Notices Of The Royal Astronomical Society

2024-02-07

Vol. 528 , num. 3, p. 5212-5230.

DOI : 10.1093/mnras/stae257

Open-source microscope add-on for structured illumination microscopy

M. T. M. Hannebelle; E. Raeth; S. M. Leitao; T. Lukes; J. Pospisil et al. 

Super-resolution techniques expand the abilities of researchers who have the knowledge and resources to either build or purchase a system. This excludes the part of the research community without these capabilities. Here we introduce the openSIM add-on to upgrade existing optical microscopes to Structured Illumination super-resolution Microscopes (SIM). The openSIM is an open-hardware system, designed and documented to be easily duplicated by other laboratories, making super-resolution modality accessible to facilitate innovative research. The add-on approach gives a performance improvement for pre-existing lab equipment without the need to build a completely new system.|Researchers developed an open-hardware structured illumination microscopy add-on. This affordable upgrade provides super-resolution capabilities for normal optical microscopes. Detailed instructions enable easy reproduction to help democratize advanced microscopy.

Nature Communications

2024-02-20

Vol. 15 , num. 1, p. 1550.

DOI : 10.1038/s41467-024-45567-7

An Ultralow Power Short-Range 60-GHz FMCW Radar in 22-nm FDSOI CMOS

S. C. Rengifo; F. Chicco; E. Le Roux; C. Enz 

This article presents the design of an ultralow power short-range 57-66 GHz frequency-modulated continuous-wave (FMCW) radar. The transmitter (TX) path includes a BPSK modulator in order to implement a low-IF architecture and it is optimized for short-range operation with 0 dBm output power. The receiver (RX) path is designed accordingly as a low-IF I/Q mixer-first for low power. The low-IF modulation minimizes the impact of LO-RX leakage, dc offsets, and flicker noise. It also allows orthogonal modulations for RX separation in multiple-input multiple-output (MIMO) operation. A band-tuning technique is used in the TX and RX for covering the wide band and it is tuned as the frequency is swept. The local oscillator (LO) distribution is designed in a modular approach to be able to extend the number of TX and RX paths for MIMO. The frequency synthesis is based on a quadrature digitally-controlled oscillator (QDCO) exploiting the coupling mechanism to achieve a maximum seamless and ultrawide frequency tuning range up to 11 GHz. A wide-band and low-power divider chain is designed using dynamic topologies. An all-digital phase-locked loop (ADPLL) is closed off-chip by means of an FPGA platform providing flexibility for the design and test of the digital loop filter without the need for extensive calibration. The 2-TX & 2-RX radar is integrated into GF 22-nm FDSOI CMOS technology. The average continuous power consumption is only 44.2 and 68.5 mW for 1-TX & 1-RX and 2-TX & 2-RX configuration, respectively.

Ieee Transactions On Microwave Theory And Techniques

2024-02-13

DOI : 10.1109/TMTT.2023.3348035

Recovering Static and Time-Varying Communities Using Persistent Edges

K. Avrachenkov; M. Dreveton; L. Leskela 

This article focuses on spectral methods for recovering communities in temporal networks. In the case of fixed communities, spectral clustering on the simple time-aggregated graph (i.e., the weighted graph formed by the sum of the interactions over all temporal snapshots) does not always produce satisfying results. To utilise information carried by temporal correlations, we propose to employ different weights on freshly appearing and persistent edges. We show that spectral clustering on such weighted graphs can be explained as a relaxation of the maximum likelihood estimator of an extension of the degree-corrected stochastic block model with Markov interactions. We also study the setting of evolving communities, for which we use the prediction at time t-1 as an oracle for inferring the community labels at time t. We demonstrate the accuracy of the proposed methods on synthetic and real data sets.

Ieee Transactions On Network Science And Engineering

2024-03-01

Vol. 11 , num. 2, p. 2087-2099.

DOI : 10.1109/TNSE.2023.3337281

SPEEDING UP KRYLOV SUBSPACE METHODS FOR COMPUTING f(A)b VIA RANDOMIZATION

A. Cortinovis; D. Kressner; Y. Nakatsukasa 

This work is concerned with the computation of the action of a matrix function f(A), such as the matrix exponential or the matrix square root, on a vector b. For a general matrix A, this can be done by computing the compression of A onto a suitable Krylov subspace. Such compression is usually computed by forming an orthonormal basis of the Krylov subspace using the Arnoldi method. In this work, we propose to compute (nonorthonormal) bases in a faster way and to use a fast randomized algorithm for least -squares problems to compute the compression of A onto the Krylov subspace. We present some numerical examples which show that our algorithms can be faster than the standard Arnoldi method while achieving comparable accuracy.

Siam Journal On Matrix Analysis And Applications

2024-01-01

Vol. 45 , num. 1, p. 619-633.

DOI : 10.1137/22M1543458

Recording physiological history of cells with chemical labeling

M-C. Huppertz; J. Wilhelm; V. Grenier; M. W. Schneider; T. Falt et al. 

Recordings of the physiological history of cells provide insights into biological processes, yet obtaining such recordings is a challenge. To address this, we introduce a method to record transient cellular events for later analysis. We designed proteins that become labeled in the presence of both a specific cellular activity and a fluorescent substrate. The recording period is set by the presence of the substrate, whereas the cellular activity controls the degree of the labeling. The use of distinguishable substrates enabled the recording of successive periods of activity. We recorded protein-protein interactions, G protein-coupled receptor activation, and increases in intracellular calcium. Recordings of elevated calcium levels allowed selections of cells from heterogeneous populations for transcriptomic analysis and tracking of neuronal activities in flies and zebrafish.

Science

2024-02-23

Vol. 383 , num. 6685, p. 890-897.

DOI : 10.1126/science.adg0812

Electronic structure and lattice dynamics of 1T-VSe2:Origin of the three-dimensional charge density wave

J. Diego; D. Subires; A. H. Said; D. A. Chaney; A. Korshunov et al. 

To characterize in detail the charge density wave (CDW) transition of 1T-VSe2, its electronic structure and lattice dynamics are comprehensively studied by means of x-ray diffraction, muon spectroscopy, angle resolved photoemission (ARPES), diffuse and inelastic x-ray scattering, and state-of-the-art first-principles density functional theory calculations. Resonant elastic x-ray scattering does not show any resonant enhancement at either V or Se, indicating that the CDW peak at the K edges describes a purely structural modulation of the electronic ordering. ARPES experiments identify (i) a pseudogap at T>T-CDW, which leads to a depletion of the density of states in the ML-M’L’ plane at T

Physical Review B

2024-01-16

Vol. 109 , num. 3, p. 035133.

DOI : 10.1103/PhysRevB.109.035133

SVGC-AVA: 360-Degree Video Saliency Prediction With Spherical Vector-Based Graph Convolution and Audio-Visual Attention

Q. Yang; Y. Li; C. Li; H. Wang; S. Yan et al. 

Viewers of 360-degree videos are provided with both visual modality to characterize their surrounding views and audio modality to indicate the sound direction. Though both modalities are important for saliency prediction, little work has been done by jointly exploiting them, which is mainly due to the lack of audio-visual saliency datasets and insufficient exploitation of the multi-modality. In this article, we first construct an audio-visual saliency dataset with 57 360-degree videos watched by 63 viewers. Through a deep analysis of the constructed dataset, we find that the human gaze can be attracted by the auditory cues, resulting in a more concentrated saliency map if the sound source’s location is further provided. To jointly exploit the visual and audio features and their correlation, we further design a saliency prediction network for 360-degree videos (SVGC-AVA) based on spherical vector-based graph convolution and audio-visual attention. The proposed spherical vector-based graph convolution can process visual and audio features directly in the sphere domain, thus avoiding projection distortion incurred by traditional CNN-based predictors. In addition, the audio-visual attention scheme explores self-modal and cross-modal correlation for both modalities, which are further hierarchically processed with the U-Net’s multi-scale structure of SVGC-AVA. Evaluations on both our and public datasets validate that SVGC-AVA can achieve higher prediction accuracy, both qualitatively and subjectively.

Ieee Transactions On Multimedia

2024-01-01

Vol. 26 , p. 3061-3076.

DOI : 10.1109/TMM.2023.3306596

High-κ Wide-Gap Layered Dielectric for Two-Dimensional van der Waals Heterostructures

A. Söll; E. Lopriore; A. K. Ottesen; J. Luxa; G. Pasquale et al. 

van der Waals heterostructures of two-dimensional materials have unveiled frontiers in condensed matter physics, unlocking unexplored possibilities in electronic and photonic device applications. However, the investigation of wide-gap, high-kappa layered dielectrics for devices based on van der Waals structures has been relatively limited. In this work, we demonstrate an easily reproducible synthesis method for the rare-earth oxyhalide LaOBr, and we exfoliate it as a 2D layered material with a measured static dielectric constant of 9 and a wide bandgap of 5.3 eV. Furthermore, our research demonstrates that LaOBr can be used as a high-kappa dielectric in van der Waals field-effect transistors with high performance and low interface defect concentrations. Additionally, it proves to be an attractive choice for electrical gating in excitonic devices based on 2D materials. Our work demonstrates the versatile realization and functionality of 2D systems with wide-gap and high-kappa van der Waals dielectric environments.

ACS Nano

2024-04-01

Vol. 18 , num. 15, p. 10397-10406.

DOI : 10.1021/acsnano.3c10411

Linear-Covariance Loss for End-to-End Learning of 6D Pose Estimation

F. Liu; Y. Hu; M. Salzmann 

Most modern image-based 6D object pose estimation methods learn to predict 2D-3D correspondences, from which the pose can be obtained using a PnP solver. Because of the non-differentiable nature of common PnP solvers, these methods are supervised via the individual correspondences. To address this, several methods have designed differentiable PnP strategies, thus imposing supervision on the pose obtained after the PnP step. Here, we argue that this conflicts with the averaging nature of the PnP problem, leading to gradients that may encourage the network to degrade the accuracy of individual correspondences. To address this, we derive a loss function that exploits the ground truth pose before solving the PnP problem. Specifically, we linearize the PnP solver around the ground- truth pose and compute the covariance of the resulting pose distribution. We then define our loss based on the diagonal covariance elements, which entails considering the final pose estimate yet not suffering from the PnP averaging issue. Our experiments show that our loss consistently improves the pose estimation accuracy for both dense and sparse correspondence based methods, achieving state-of-the-art results on both Linemod-Occluded and YCB-Video.

2023 Ieee/Cvf International Conference On Computer Vision (Iccv 2023)

2023-01-01

IEEE/CVF International Conference on Computer Vision (ICCV), Paris, FRANCE, OCT 02-06, 2023.

p. 14061-14071

DOI : 10.1109/ICCV51070.2023.01297

MixCycle: Mixup Assisted Semi-Supervised 3D Single Object Tracking with Cycle Consistency

Q. Wu; J. Yang; K. Sun; C. Zhang; Y. Zhang et al. 

3D single object tracking (SOT) is an indispensable part of automated driving. Existing approaches rely heavily on large, densely labeled datasets. However, annotating point clouds is both costly and time-consuming. Inspired by the great success of cycle tracking in unsupervised 2D SOT, we introduce the first semi-supervised approach to 3D SOT. Specifically, we introduce two cycle-consistency strategies for supervision: 1) Self tracking cycles, which leverage labels to help the model converge better in the early stages of training; 2) forward-backward cycles, which strengthen the tracker’s robustness to motion variations and the template noise caused by the template update strategy. Furthermore, we propose a data augmentation strategy named SOTMixup to improve the tracker’s robustness to point cloud diversity. SOTMixup generates training samples by sampling points in two point clouds with a mixing rate and assigns a reasonable loss weight for training according to the mixing rate. The resulting MixCycle approach generalizes to appearance matching-based trackers. On the KITTI benchmark, based on the P2B tracker [16], MixCycle trained with 10% labels outperforms P2B trained with 100% labels, and achieves a 28.4% precision improvement when using 1% labels. Our code will be released at https://github.com/Mumuqiao/MixCycle.

2023 Ieee/Cvf International Conference On Computer Vision (Iccv 2023)

2023-01-01

IEEE/CVF International Conference on Computer Vision (ICCV), Paris, FRANCE, OCT 02-06, 2023.

p. 13910-13920

DOI : 10.1109/ICCV51070.2023.01283

Learned Compressive Representations for Single-Photon 3D Imaging

F. Gutierrez-Barragan; F. Mu; A. Ardelean; A. Ingle; C. Bruschini et al. 

Single-photon 3D cameras can record the time-of-arrival of billions of photons per second with picosecond accuracy. One common approach to summarize the photon data stream is to build a per-pixel timestamp histogram, resulting in a 3D histogram tensor that encodes distances along the time axis. As the spatio-temporal resolution of the histogram tensor increases, the in-pixel memory requirements and output data rates can quickly become impractical. To overcome this limitation, we propose a family of linear compressive representations of histogram tensors that can be computed efficiently, in an online fashion, as a matrix operation. We design practical lightweight compressive representations that are amenable to an in-pixel implementation and consider the spatio-temporal information of each timestamp. Furthermore, we implement our proposed framework as the first layer of a neural network, which enables the joint end-to-end optimization of the compressive representations and a downstream SPAD data processing model. We find that a well-designed compressive representation can reduce in-sensor memory and data rates up to 2 orders of magnitude without significantly reducing 3D imaging quality. Finally, we analyze the power consumption implications through an on-chip implementation.

2023 Ieee/Cvf International Conference On Computer Vision (Iccv 2023)

2023-01-01

IEEE/CVF International Conference on Computer Vision (ICCV), Paris, FRANCE, OCT 02-06, 2023.

p. 10722-10732

DOI : 10.1109/ICCV51070.2023.00987

AutoSynth: Learning to Generate 3D Training Data for Object Point Cloud Registration

Z. Dang; M. Salzmann 

In the current deep learning paradigm, the amount and quality of training data are as critical as the network architecture and its training details. However, collecting, processing, and annotating real data at scale is difficult, expensive, and time-consuming, particularly for tasks such as 3D object registration. While synthetic datasets can be created, they require expertise to design and include a limited number of categories. In this paper, we introduce a new approach called AutoSynth, which automatically generates 3D training data for point cloud registration. Specifically, AutoSynth automatically curates an optimal dataset by exploring a search space encompassing millions of potential datasets with diverse 3D shapes at a low cost. To achieve this, we generate synthetic 3D datasets by assembling shape primitives, and develop a meta-learning strategy to search for the best training data for 3D registration on real point clouds. For this search to remain tractable, we replace the point cloud registration network with a much smaller surrogate network, leading to a 4056.43 times speedup. We demonstrate the generality of our approach by implementing it with two different point cloud registration networks, BPNet [13] and IDAM [34]. Our results on TUDL [26], LINEMOD [23] and Occluded-LINEMOD [7] evidence that a neural network trained on our searched dataset yields consistently better performance than the same one trained on the widely used ModelNet40 dataset [65].

2023 Ieee/Cvf International Conference On Computer Vision (Iccv 2023)

2023-01-01

IEEE/CVF International Conference on Computer Vision (ICCV), Paris, FRANCE, OCT 02-06, 2023.

p. 8975-8985

DOI : 10.1109/ICCV51070.2023.00827

SoDaCam: Software-defined Cameras via Single-Photon Imaging

V. Sundar; A. Ardelean; T. Swedish; C. Brusschini; E. Charbon et al. 

Reinterpretable cameras are defined by their post-processing capabilities that exceed traditional imaging. We present “SoDaCam” that provides reinterpretable cameras at the granularity of photons, from photon-cubes acquired by single-photon devices. Photon-cubes represent the spatio-temporal detections of photons as a sequence of binary frames, at frame-rates as high as 100 kHz. We show that simple transformations of the photon-cube, or photon-cube projections, provide the functionality of numerous imaging systems including: exposure bracketing, flutter shutter cameras, video compressive systems, event cameras, and even cameras that move during exposure. Our photon-cube projections offer the flexibility of being software-defined constructs that are only limited by what is computable, and shot-noise. We exploit this flexibility to provide new capabilities for the emulated cameras. As an added benefit, our projections provide camera-dependent compression of photon-cubes, which we demonstrate using an implementation of our projections on a novel compute architecture that is designed for single-photon imaging.

2023 Ieee/Cvf International Conference On Computer Vision (Iccv 2023)

2023-01-01

IEEE/CVF International Conference on Computer Vision (ICCV), Paris, FRANCE, OCT 02-06, 2023.

p. 8131-8142

DOI : 10.1109/ICCV51070.2023.00750

Federated Reinforcement Learning for Electric Vehicles Charging Control on Distribution Networks

J. Qian; Y. Jiang; X. Liu; Q. Wang; T. Wang et al. 

With the growing popularity of electric vehicles (EVs), maintaining power grid stability has become a significant challenge. To address this issue, EV charging control strategies have been developed to manage the switch between vehicle-to-grid (V2G) and grid-to-vehicle (G2V) modes for EVs. In this context, multiagent deep reinforcement learning (MADRL) has proven its effectiveness in EV charging control. However, existing MADRL-based approaches fail to consider the natural power flow of EV charging/discharging in the distribution network and ignore driver privacy. To deal with these problems, this article proposes a novel approach that combines multi-EV charging/discharging with a radial distribution network (RDN) operating under optimal power flow (OPF) to distribute power flow in real time. A mathematical model is developed to describe the RDN load. The EV charging control problem is formulated as a Markov decision process (MDP) to find an optimal charging control strategy that balances V2G profits, RDN load, and driver anxiety. To effectively learn the optimal EV charging control strategy, a federated deep reinforcement learning algorithm named FedSAC is further proposed. Comprehensive simulation results demonstrate the effectiveness and superiority of our proposed algorithm in terms of the diversity of the charging control strategy, the power fluctuations on RDN, the convergence efficiency, and the generalization ability.

Ieee Internet Of Things Journal

2024-02-01

Vol. 11 , num. 3, p. 5511-5525.

DOI : 10.1109/JIOT.2023.3306826

Nine lensed quasars and quasar pairs discovered through spatially extended variability in Pan-STARRS

F. Dux; C. A. C. Lemon; F. Courbin; F. Neira; T. Anguita et al. 

We present the proof of concept of a method for finding strongly lensed quasars using their spatially extended photometric variability through difference imaging in cadenced imaging survey data. We applied the method to Pan-STARRS, starting with an initial selection of 14 107 Gaia multiplets with quasar-like infrared colours from WISE. We identified 229 candidates showing notable spatially extended variability during the Pan-STARRS survey period. These include 20 known lenses and an additional 12 promising candidates for which we obtained long-slit spectroscopy follow-up. This process resulted in the confirmation of four doubly lensed quasars, four unclassified quasar pairs, and one projected quasar pair. Only three are pairs of stars or quasar + star projections. The false-positive rate accordingly is 25%. The lens separations are between 0.81 ” and 1.24 ”, and the source redshifts lie between z = 1 :47 and z = 2 :46. Three of the unclassified quasar pairs are promising dual-quasar candidates with separations ranging from 6.6 to 9.3 kpc. We expect that this technique is a particularly e fficient way to select lensed variables in the upcoming Rubin-LSST, which will be crucial given the expected limitations for spectroscopic follow-up.

Astronomy & Astrophysics

2024-01-31

Vol. 682 , p. A47.

DOI : 10.1051/0004-6361/202347598

Rapid Network Adaptation: Learning to Adapt Neural Networks Using Test-Time Feedback

T. Yeo; O. F. Kar; Z. Sodagar; A. Zamir 

We propose a method for adapting neural networks to distribution shifts at test-time. In contrast to training-time robustness mechanisms that attempt to anticipate and counter the shift, we create a closed-loop system and make use of test-time feedback signal to adapt a network on the fly. We show that this loop can be effectively implemented using a learning-based function, which realizes an amortized optimizer for the network. This leads to an adaptation method, named Rapid Network Adaptation (RNA), that is notably more flexible and orders of magnitude faster than the baselines. Through a broad set of experiments using various adaptation signals and target tasks, we study the generality, efficiency, and flexibility of this method. We perform the evaluations using various datasets (Taskonomy, Replica, ScanNet, Hypersim, COCO, ImageNet), tasks (depth, optical flow, semantic segmentation, classification), and distribution shifts (Cross-datasets, 2D and 3D Common Corruptions) with promising results.

2023 Ieee/Cvf International Conference On Computer Vision, Iccv

2023-01-01

IEEE/CVF International Conference on Computer Vision (ICCV), Paris, FRANCE, OCT 02-06, 2023.

p. 4651-4664

DOI : 10.1109/ICCV51070.2023.00431

Center-Based Decoupled Point Cloud Registration for 6D Object Pose Estimation

H. Jiang; Z. Dang; S. Gu; J. Xie; M. Salzmann et al. 

In this paper, we propose a novel center-based decoupled point cloud registration framework for robust 6D object pose estimation in real-world scenarios. Our method decouples the translation from the entire transformation by predicting the object center and estimating the rotation in a center- aware manner. This center offset-based translation estimation is correspondence-free, freeing us from the difficulty of constructing correspondences in challenging scenarios, thus improving robustness. To obtain reliable center predictions, we use a multi-view (bird’s eye view and front view) object shape description of the source-point features, with both views jointly voting for the object center. Additionally, we propose an effective shape embedding module to augment the source features, largely completing the missing shape information due to partial scanning, thus facilitating the center prediction. With the center-aligned source and model point clouds, the rotation predictor utilizes feature similarity to establish putative correspondences for SVD-based rotation estimation. In particular, we introduce a center-aware hybrid feature descriptor with a normal correction technique to extract discriminative, partaware features for high-quality correspondence construction. Our experiments show that our method outperforms the state-of-the-art methods by a large margin on realworld datasets such as TUD-L, LINEMOD, and OccludedLINEMOD. Code is available at https://github.com/JiangHB/CenterReg.

2023 Ieee/Cvf International Conference On Computer Vision, Iccv

2023-01-01

IEEE/CVF International Conference on Computer Vision (ICCV), Paris, FRANCE, OCT 02-06, 2023.

p. 3404-3414

DOI : 10.1109/ICCV51070.2023.00317

GECCO: Geometrically-Conditioned Point Diffusion Models

M. J. Tyszkiewicz; P. Fua; E. Trulls 

Diffusion models generating images conditionally on text, such as Dall-E 2 [51] and Stable Diffusion[53], have recently made a splash far beyond the computer vision community. Here, we tackle the related problem of generating point clouds, both unconditionally, and conditionally with images. For the latter, we introduce a novel geometrically-motivated conditioning scheme based on projecting sparse image features into the point cloud and attaching them to each individual point, at every step in the denoising process. This approach improves geometric consistency and yields greater fidelity than current methods relying on unstructured, global latent codes. Additionally, we show how to apply recent continuous-time diffusion schemes [59, 21]. Our method performs on par or above the state of art on conditional and unconditional experiments on synthetic data, while being faster, lighter, and delivering tractable likelihoods. We show it can also scale to diverse indoors scenes.

2023 Ieee/Cvf International Conference On Computer Vision, Iccv

2023-01-01

IEEE/CVF International Conference on Computer Vision (ICCV), Paris, FRANCE, OCT 02-06, 2023.

p. 2128-2138

DOI : 10.1109/ICCV51070.2023.00203

Data-Driven Behaviour Estimation in Parametric Games

A. M. Maddux; N. Pagan; G. Belgioioso; F. Doerfler 

A central question in multi-agent strategic games deals with learning the underlying utilities driving the agents’ behaviour. Motivated by the increasing availability of large data-sets, we develop an unifying data-driven technique to estimate agents’ utility functions from their observed behaviour, irrespective of whether the observations correspond to equilibrium configurations or to temporal sequences of action profiles. Under standard assumptions on the parametrization of the utilities, the proposed inference method is computationally efficient and finds all the parameters that rationalize the observed behaviour best. We numerically validate our theoretical findings on market share estimation problem under advertising competition, using historical data from the Coca-Cola Company and Pepsi Inc. duopoly.|Copyright (c) 2023 The Authors.

Ifac Papersonline

2023-01-01

22nd World Congress of the International Federation of Automatic Control (IFAC), Yokohama, JAPAN, JUL 09-14, 2023.

p. 9330-9335

DOI : 10.1016/j.ifacol.2023.10.220

Object-oriented modelling of advanced computer cooling solutions

A. Leva; F. Terraneo; T. Cancelliere; M. Chioggi; W. Fornaciari et al. 

Modern computing systems are so energy- intensive to make efficient cooling vital for their operation. This is giving rise to a variety of innovative cooling solutions based on a mix of traditional and new techniques. The design and engineering of these solutions, as well as of the necessarily involved controls, requires dynamic simulation. Cooling simulation models must be capable of representing multi-physics cyber-physical systems, of connecting to specialised 3D chip simulators when high detail is needed, and at the same time of scaling up to the data centre – tailoring the detail level accordingly – when system-level studies need carrying out. In such a challenging scenario, an enabling technology is Object- Oriented Modelling (OOM). Along this approach we here present a Modelica library to serve the purposes just outlined, and that we are releasing as free software for the scientific and engineering community.Copyright (c) 2023 The Authors.

Ifac Papersonline

2023-01-01

22nd World Congress of the International Federation of Automatic Control (IFAC), Yokohama, JAPAN, JUL 09-14, 2023.

p. 6441-6446

DOI : 10.1016/j.ifacol.2023.10.856

Automatic and high-precision microseismic monitoring of progressive failure prior, during, and after tunnel excavation

S. Momeni; M. Ziegler; C. Nussbaum; B. Lecampion 

Acoustic emission (AE) monitoring is commonly used to inspect the health of a structure continuously. During fracture processes elastic waves of AE are created and emitted, and sensors can capture these waves. The acquired signals can be processed to track and describe the spatio-temporal progression of fractures in solid materials in real-time using quantitative geophysics-based approaches. Typically, these data are processed manually due to the complex nature of the recorded signals mainly caused by heterogeneous medium conditions. This method hasn’t found many real-world applications due to its high processing costs of the acquired massive datasets, which may exceed terabytes. Therefore, for use in a structural health monitoring (SHM), an automated methodology that can lower costs while keeping high precision is required. We discuss the application of a new automated and high-precision AE monitoring algorithm and software called SIMORGH (Momeni et al., 2021a, b) suitable for SHM. The primary software has been created for monitoring laboratory-scale (i.e., cm-size specimen) hydraulic fracturing. The algorithm has been scaled up to work also for heterogeneous media at the meters scale. SIMORGH supports a number of common data formats and can handle both continuous and trigger-based data. We show some initial results of implementing SIMORGH for microseismic monitoring of rock mass damage evolution around a large-diameter experiment borehole in faulted Opalinus Clay shale in the Mont Terri rock laboratory, Switzerland. The AE data include time periods prior, during, and after borehole drilling and was produced in the frame of the so-called PF experiment (Progressive failure of structurally-controlled overbreaks; Ziegler & Loew, 2020). Eight piezoelectric sensors installed in four boreholes have been used to continually capture data at a sampling rate of 200 kHz, filling up more than 500 GB of memory per day. Active acoustic scanning measurements of body wave velocities showed a transversely isotropic medium with p-wave velocities varying from 2.5 km/s to 3.5 km/s in slow and fast orientations. Adopting the medium information, our software was able to locate over 2000 AE sources automatically for a monitoring period of two weeks, and with a localization precision of 2 mm. Several AEs were also localized manually and show comparable results with those obtained by SIMORGH. If enough processing units are provided, SIMORGH can perform the calculations in parallel and enable real-time SHM with excellent precision on fracture geometry imaging.

Journal of Acoustic Emission (JAE)

2023-09-28

ACOUSTIC EMISSION WORKING GROUP, Princeton, NJ, USA, September 26-28, 2023.

Automatic and high-precision acoustic emission-based structural health monitoring of concrete structures

S. Momeni; T. Schumacher; L. Linzer; B. Lecampion 

Acoustic emission (AE) monitoring is a useful technique to monitor the health of a structure continuously, helping to prevent potential failure. AE are elastic waves produced and emitted during fracture processes inside a material and are recorded by sensors. Using quantitative geophysics-based methods, the recorded signals can be processed to monitor and describe the spatio-temporal growth of fracture in brittle materials such as concrete in real-time. Because of the complex nature of the recorded elastic signals and the non-homogeneous medium condition of concrete, data are usually processed manually. Combined with the high processing cost of the large datasets collected, which may exceed Terabytes, this approach has not found many real-world applications. Thus, an automated methodology is needed that can reduce costs, while maintaining high-precision, for implementation in a structural health monitoring (SHM) scheme. Here we discuss the application of a new automated and high-precision AE monitoring algorithm and software called SIMRGH [5,6] suitable for SHM of concrete structures. The core software has been developed for the laboratory-scale (in scale of centimeters) hydraulic fracture monitoring. It is up-scaled to the meters scale and works for heterogeneous media. The software works with various standard data formats and can handle trigger-based as well as continuous data. In this paper, we show some initial results of implementing the software for AE monitoring of two 4.88-meter-long concrete beams loaded in the laboratory and compare it with manually processed AE data. We were able to locate at least three up to 10 times more AE sources compared to when manual processing was used and with higher precision. If enough processing units are provided, the software can run in parallel and enable real-time SHM with excellent precision on crack geometry imaging. Future work will include implementing moment tensor inversion (MTI) to characterize AE source physics, providing valuable information for decision makers regarding the nature of the captured data.

2023-09-14

14th International Workshop on Structural Health Monitoring, Stanford University, CA, September 12-14, 2023.

DOI : 10.12783/shm2023/36857

Shaped Laser Pulses for Microsecond Time-Resolved Cryo-EM: Outrunning Crystallization during Flash Melting

C. R. Krüger; N. J. Mowry; M. Drabbels 

Water vitrifies if cooled at rates above 3 × 105 K/s. In contrast, when the resulting amorphous ice is flash heated, crystallization occurs even at a more than 10 times higher heating rate, as we have recently shown. This may present an issue for microsecond time-resolved cryo-electron microscopy experiments, in which vitreous ice samples are briefly melted with a laser pulse because transient crystallization could potentially alter the dynamics of the embedded proteins. Here, we demonstrate how shaped microsecond laser pulses can be used to increase the heating rate and outrun crystallization. Time-resolved electron diffraction experiments reveal that the critical heating rate for amorphous solid water (ASW) is about 108 K/s. Our experiments add to the toolbox of the emerging field of microsecond time-resolved cryo-electron microscopy by demonstrating a straightforward approach for avoiding crystallization during laser melting and for achieving significantly higher heating rates, which paves the way for nanosecond time-resolved experiments.

The Journal of Physical Chemistry Letters

2024-04-11

num. 15, p. 4244−4248.

DOI : 10.1021/acs.jpclett.4c00315

Electromagnetic time reversal for online partial discharge location in power cables: Influence of interfering reflections from grid components

A. Ragusa; P. A. A. F. Wouters; H. Sasse; A. Duffy; F. Rachidi-Haeri et al. 

In online single-sided partial discharge (PD) location, the measured PD reflection patterns are affected by the characteristics of all the components of the associated power network. This paper analyses the performance of a PD location method based on electromagnetic time reversal (EMTR) theory, when interfering reflections contribute to the transient signals emitted by the PD event. The topology analysed is formed from a ring main unit (RMU) in a medium voltage grid with mixed cross-linked polyethylene and paper-insulated lead-covered (PILC) cable sections. The PD reflection patterns, observed at the RMU, are disturbed by the reflections coming from the impedance discontinuities of the circuit and by the reflections coming from the cable ends of the PILC cables connected to the RMU. The simulated configuration is chosen such that classical location techniques tend to fail due to overlapping peaks and other signal distortion. This is because the classic techniques are based on identifying individual reflection peaks from which the PD source can be determined via differences in time of arrival. The numerical investigation shows that the accuracy of the EMTR-based location method is robust against these effects, achieving a PD localisation with an error less than the 0.1%. The results also show that the EMTR-based method can localise PDs using a PD monitoring point located somewhere along the network and not necessarily at the line termination.

IET Science, Measurement & Technology

2024

p. 1-8.

DOI : 10.1049/smt2.12197

Comparison of selected surface level ERA5 variables against in‐situ observations in the continental Arctic

J. B. Pernov; J. Gros-Daillon; J. Schmale 

In this study, data from 17 ground-based, continental Arctic observatories areused to evaluate the performance of the European Centre for Medium-RangeWeather Forecasts Reanalysis version 5 (ERA5) reanalysis model. Three aspectsare evaluated: (i) the overall reproducibility of variables at all stations for allseasons at one-hour time resolution; (ii) the seasonal performance; and (iii)performance between different temporal resolutions (one hour to one month).Performance is evaluated based on the slope,R2value, and root-mean-squarederror (RMSE). We focus on surface meteorological variables including 2-mair temperature (temperature), relative humidity (RH), surface pressure, windspeed, zonal and meridional wind speed components, and short-wave down-ward (SWD) radiation flux. The overall comparison revealed the best resultsfor surface pressure (0.98±0.02,R2mean±standard deviation [σR2]), followedby temperature (0.94±0.02), and SWD radiation flux (0.87±0.03) while windspeed (0.49±0.12), RH (0.42±0.20), zonal (0.163±0.15) and meridional windspeed (0.129±0.17) displayed poor results. We also found that certain variables(surface pressure, wind speed, meridional, and zonal wind speed) showed noseasonal dependency while others (temperature, RH, and SWD radiation flux)performed better during certain seasons. Improved results were observed whendecreasing the temporal resolution from one hour to one month for temper-ature, meridional and zonal wind speed, and SWD radiation flux. However,certain variables (RH and surface pressure) showed comparatively worse resultsfor monthly resolution. Overall, ERA5 performs well in the Arctic, but cautionneeds to be taken with wind speed and RH, which has implications for the useof ERA5 in global climate models. Our results are useful to the scientific com-munity as it assesses the confidence to be placed in each of the surface variablesproduced by ERA5.KEYWORDSArctic, ERA5, meteorology, reanalysis model/in-situ observation comparisonJakob Boyd Pernov and Jules Gros-Daillon contributed equally to this work.This is an open access article under the terms of theCreative Commons AttributionLicense, which permits use, distribution and reproduction in any medium, provided theoriginal work is properly cited.© 2024 The Authors.Quarterly Journal of the Royal Meteorological Societypublished by John Wiley & Sons Ltd on behalf of the Royal Meteorological Society.Q J R Meteorol Soc. 2024;1–24.wileyonlinelibrary.com/journal/qj1

Quarterly Journal of the Royal Meteorological Society

2024

Vol. 1-24 .

DOI : 10.1002/qj.4700

Settlement Layout Optimization: Appropriate Communal Open Space

L. A. Herrera Quiroz; Y. Pedrazzini 

2024

p. 4.

Settlement Layout Optimization: Appropriate Communal Open Space – Annex 1: Public Services & Facilities (PSF)

L. A. Herrera Quiroz; Y. Pedrazzini 

2024

p. 31.

Settlement Layout Optimization: Appropriate Communal Open Space – Annex 2: Efficient Circulation Network (CN)

L. A. Herrera Quiroz; Y. Pedrazzini 

2024

p. 21.

3D Geomechanical Modelling of CO2 Storage with Focus on Fault Stability

E. Gallyamov; B. Lecampion; N. Richart; G. Anciaux; J-F. Molinari 

MEGA Seminar , EPFL, Switzerland, 2024-03-21.

3D Geomechanical Modelling of CO2 Storage with Focus on Fault Stability

E. Gallyamov; N. Richart; B. Lecampion; J-F. Molinari; G. Anciaux 

A digital twin of the subsurface is crucial for all performance and risks assessments of a CO2 storage activities. The goal of the project is to develop an efficient fully-coupled geomechanical simulator for CO2 storage capable to model fluid flow along cracks and faults and their associated opening and slip. To reach this goal, we extend the open-source finite element library Akantu to simulate the time-dependent hydro-mechanical changes associated with CO2 injection. Thanks to the high-performance computing capabilities of Akantu, the solver will allow representing the complete three-dimensional geological structure of a site including the presence of natural fractures and faults whose reactivation potential is critical to assess.

Poroelasticity Minisimposium, Geopolis, University of Lausanne, Switzerland, 4-5 March 2024.

Un modèle pluraliste d’éducation numérique, l’expérience du canton de Vaud en Suisse

D. Boullier; F. Chessel-Lazzarotto; G. Liegeois; F. Mondada; N. Badoux et al. 

Le canton de Vaud en Suisse a lancé depuis 2019 un nouveau format d’éducation numérique pour tous les niveaux, de la maternelle au gymnase, qui associe étroitement informatique et sciences sociales. Dans ce compte-rendu d’expérience, nous présentons à la fois le modèle qui l’a inspiré, les références conceptuelles auxquelles il se rattache, des exemples de sa mise en œuvre ainsi que les conditions de sa réalisation. Le modèle est pluraliste car il combine plusieurs visées pédagogiques : comprendre l’algorithmie comme principe de modularité dans le traitement des problèmes, comprendre les environnements socio-techniques historiques et contemporains dans lesquels sil sont déployés, s’engager dans des décisions de délégation aux machines à divers niveaux, s’engager dans une autorégulation éthique dans ces choix. Dans ce cadre, une variante du modèle centrée sur les enjeux écologiques est présentée.

Distances et Médiations des savoirs

2023-10-13

Vol. 43/2023 .

DOI : 10.4000/dms.9344

La Science Informatique au lycee : Comment assurer des ressources de qualite ?

C. Pulfrey 

La qualité des ressources disponibles pour l’enseignement de la Science Informatique au niveau du lycée est un facteur décisif dans la qualité de l’enseignement et la motivation des jeunes à poursuivre des études dans la matière. Dans cet atelier, nous avons l’occasion en premier d’échanger sur les défis qui confrontent les enseignants de Science Informatique au lycée. Par la suite nous découvrons et testons une collection de nouvelles ressources, spécialement conçus par des enseignants spécialistes et disponibles gratuitement en ligne. Ces ressources couvrent les grands thèmes de la Science informatique, c’est-à- dire la Représentation de l’Information, l’Algorithmique, l’Architecture des ordinateurs et la Programmation et en plus il y a une partie des ressources dédiée à l’enseignement de la Sociologie de la Science Informatique. Nous examinons également les retours des enseignants et des élèves qui les ont testées dans le cadre d’un projet pilote.

2023-11-12

Activités débranchées ludiques pour l’enseignement de concepts d’édu- cation numérique au collège

A. C. Nicole; Y. Secq 

Cet article présente deux ressources pédagogiques permettant d’aborder de manière ludique des éléments d’éducation numérique avec des élèves de collège. La première activité, Captology, est un jeu de cartes inspiré de la mécanique du jeu des 1000 bornes, qui vise à sensibiliser aux techniques mises en œuvre par certains services numériques pour exploiter l’attention des utilisateurs à des fins publicitaires. La seconde activité, Les Cordées du Cervin, est un jeu de plateau permettant d’initier les élèves aux notions de variable et d’affectation. Ces deux ressources ont été développées dans le cadre de la réforme de l’éducation numérique menée au niveau de l’école obligatoire dans le canton de Vaud en Suisse, et sont diffusées sous licence Creative Commons.

2023-11-12

Activités débranchées en Science Informatique pour les 3-8 ans

F. Chessel-Lazzarotto 

Au travers de deux activités phares du manuel Décodage 1-4P vaudois (élèves de 4 à 8 ans), l’atelier du mercredi 17 mai 2023 a proposé à 35 enseignants en formation initiale d’aborder les concepts de Science Informatique pour des élèves de classes primaires. Vous trouverez dans cet article un exposé de l’atelier réalisé en 2022 pour DIDAPRO d’une durée 45 minutes, qui a permis de manipuler quelques étapes des deux activités et de mettre en valeur les notions et les enjeux sous-jacents. La première activité, le jeu de la grue, concerne la création de séquences d’instructions et la formalisation du langage associé. La seconde activité Pixel Paravent concerne la représentation des données et leur encodage. Ensuite, quelques résultats provenant des sessions de formation pilotées dans le Canton de Vaud (Suisse) de 2018 à 2022 sont présentés.

2023-11-12

Concevoir un robot avec des élèves de 10-12 ans Felipe

F. Martinez 

Cet atelier présente une activité débranchée visant la conception d’un robot en réponse à un besoin spécifique. Reposant sur une approche méthodique, elle est principalement destinée à des élèves de 10-12 ans. Avant d’entamer le processus de conception, plusieurs étapes préliminaires sont entreprises. Elles incluent notamment l’observation et la classification de robots selon différents critères, ainsi que la définition et le partage des avantages et des inconvénients associés à leur utilisation. La variété des composants embarqués dans un robot est également abordée afin de saisir l’articulation fonctionnelle “capteurs-programmes-actionneurs”. Ces différentes étapes conduisent les élèves à effectuer des choix réfléchis et à se positionner de façon critique quant à la place des robots dans notre société. Ils·elles sont finalement amené·e·s à concevoir leur robot à l’aide d’un plateau de conception et de cartes à agencer. La présente ressource a été développée dans le cadre du projet EduNum du Canton de Vaud, Suisse, et est diffusée sous licence Creative Common.

2024-04-15

Jeu de rôle sur les enjeux de l’automatisation de la conduite

S. Agrebi 

Jeu de rôle sur les enjeux de l’automatisation de la conduite Des navettes autonomes dans ma commune ? Sonia AGREBI Centre LEARN, École Polytechnique Fédérale de Lausanne, Suisse Numéro thématique 4 / 2024 RÉSUMÉ Cet atelier présente une ressource pédagogique débranchée pour sensibiliser les élèves aux enjeux liés à la conduite autonome, tout en ajoutant une touche ludique à leur apprentissage. Pour cette activité, la classe se transforme en un conseil communal fictif, créant ainsi un jeu de rôle autour de l’introduction des navettes autonomes. Les élèves se voient attribuer divers rôles, ce qui contribue à leur engagement. Ils·elles débattent de l’adoption de ces navettes dans leur commune et explorent les différentes perspectives des acteurs impliqués de manière interactive. Les ressources nécessaires à cette activité ont été conçues dans le cadre de la formation CAS pour l’Enseignement de la Science Informatique en Secondaire 1 faisant partie du projet EduNum du Canton de Vaud, Suisse. Elles sont destinées aux élèves âgés de 12 à 15 ans. Cet atelier offre une opportunité aux participants de découvrir cette ressource pédagogique ainsi que sa mise en pratique en classe.

2024-04-15

Jeux de cartes sérieux sur des notions de cybersécurité

F. Martinez; Y. Secq 

Cet article présente une modalité pédagogique débranchée à la croisée d’un escape game et d’un livre dont vous êtes le héros pour initier des élèves de 13 à 16 ans à des notions de culture informatique liées à la cybersécurité. L’objectif est de plonger les élèves dans un scénario les invitant à comprendre une situation en découvrant des notions de culture informatique lors de leur parcours. À travers deux jeux de cartes, les élèves plongent dans un scénario les invitant à réaliser des choix et à se confronter à une variété de problématiques : le premier jeu se centre principalement sur des situations pouvant être rencontrées quotidiennement par les élèves et le second sur d’autres plus complexes et propres à un contexte professionnel. L’atelier permettra aux participants d’expérimenter cette modalité avant de découvrir la conception scénaristique et technique de ces jeux sérieux. Cette modalité a été développée dans le cadre de la formation continue CAS pour l’Enseignement de la Science Informatique en Secondaire 1 au sein du projet pilote Edunum du canton de Vaud en Suisse.

2024-04-15

Numérique et environnement : cartographie du cycle de vie de nos équipements numériques

S. Agrebi 

Cet article présente une activité pédagogique débranchée pour sensibiliser les élèves aux enjeux environnementaux et sociaux liés à l’utilisation des technologies du numérique sur la base d’une cartographie de leur cycle de vie : fabrication, utilisation et fin de vie. L’activité vise une prise de conscience de la matérialité du numérique et de ses multiples conséquences. Elle encourage également les élèves à réfléchir aux actions possibles, à la fois individuelles et collectives, pouvant être entreprises pour limiter voire réduire les impacts environnementaux du numérique. Les cartes servant à la réalisation de la cartographie ont été réalisées dans le cadre du projet EduNum du Canton de Vaud, Suisse. Elles sont destinées à des élèves de 12 à 15 ans. Des déclinaisons adaptées aux élèves plus jeunes et plus âgés existent également. Cet atelier offre aux participants l’occasion de découvrir cette activité ainsi que sa mise en œuvre avec des élèves.

2024-04-15

Lithium tantalate photonic integrated circuits for volume manufacturing

C. Wang; T. Kippenberg 

Dataset for the manuscript “Lithium tantalate photonic integrated circuits for volume manufacturing”.  DOI: 10.1038/s41586-024-07369-1 Contains all raw data and code used to produce the Figures and Extended Data Figures in the manuscript. 

2023

Bioengineering functional organoid models across scales

T. Hübscher / Director(s) : M. Lütolf 

The last two decades have seen the development of organoid models for many different tissues and organs. Organoids are three-dimensional organ-mimetics derived from stem or progenitor cells comprising various specialized cell types, resembling the architecture of their native organ on a smaller scale, and recapitulating some of its functions. They completely changed the cell culture world, offering highly interesting insights into basic research and beginning to demonstrate their potential for clinical applications. Despite all this, organoid growth relies on poorly controllable stem cell self-organization, which limits their reproducibility and size. Moreover, organoids often mimic only one compartment (e.g. the epithelium) of their native counterparts, and for some organs organoid models do not yet exist. In this thesis, I introduce several bioengineering approaches to help overcome some of these limitations and obtain more robust and functional organoid models. Such engineering approaches were applied at different biological scales. In chapter I, we induced for the first time the formation pathophysiologically relevant tumors in vitro in a highly observable setting based on cell responsiveness to light. With an optogenetic system driving Cre recombinase expression, we controlled the induction of cancer driver mutations in space and time in Apcfl/fl;KrasLSL-G12D/+;Trp53fl/f (AKP) colon organoids. A colon organoid-on-a-chip platform was then used to obtain a defined topology compatible with long-term studies and imaging. These bioengineering approaches provided us with insights into tumor initiation and development processes that would not have been possible with conventional cancer models. In chapter II, I developed a new functional organoid model by applying knowledge gained from other organoids to the thymus, and, in particular, to thymic epithelial cells. The organoids were characterized in detail to show that the newly established culture conditions have the potential to preserve the functional ability of thymic epithelial cells to mediate thymopoiesis. I have demonstrated this by reaggregating thymic epithelial cells cultured as organoids with T cell progenitors and showing that T cell development in these reaggregates recapitulates to a large extent the process that occurs in the native thymus. In addition, when transplanted into mice, the reaggregates were capable of attracting new T cell progenitors, thus reproducing another important feature of the thymus in vivo. In general, this part aimed to bring the fields of organoid and immunology closer together. In chapter III, we used bioprinting as a bioengineering strategy to create larger organoid constructs with a shape and cell type composition resembling their native organ. Specifically, centimeter-scale tissue constructs were printed that assembled different parts of the gastrointestinal tract in one functional epithelial tube. This chapter illustrates the possibility of harnessing the native properties of cells, such as their self-organization capability, and of leveraging bioengineering approaches to extrinsically guide them. Taken together, this thesis demonstrates the potential of combining different fields, such as biology and engineering, to advance basic research. It is hoped that the knowledge gained can be applied to human organoids in the future to develop new functional models for translational applications.

Lausanne: EPFL

2024

p. 187.

DOI : 10.5075/epfl-thesis-9993

Scalable constrained optimization

M-L. Vladarean / Director(s) : N. H. B. Flammarion 

Modern optimization is tasked with handling applications of increasingly large scale, chiefly due to the massive amounts of widely available data and the ever-growing reach of Machine Learning. Consequently, this area of research is under steady pressure to develop scalable and provably convergent methods capable of handling hefty, high-dimensional problems. The present dissertation contributes to recent efforts in this direction by proposing optimization algorithms with improved scalability. Concretely, (1) We develop three novel Frank-Wolfe-type methods for minimizing convex stochastic objectives subject to stochastic linear inclusion constraints. The key feature of our algorithms is that they process only a subset of the constraints per iteration, thus gaining an edge over methods that require full passes through the data for large-scale problems. (2) We generalize Frank-Wolfe-type methods to a class of composite non-differentiable objectives — a setting in which the classical Frank-Wolfe algorithm is known not to converge. We circumvent the difficulties related to non-differentiability by leveraging the problem structure and a modified linear minimization oracle of the constraint set, thus attaining convergence rates akin to the smooth case. (3) We propose an adaptive primal-dual algorithm for solving structured convex-concave saddle point problems, whose empirical convergence is improved as a result of tailoring the stepsizes to the local problem geometry. Importantly, our method achieves adaptivity “for-free” by using readily available quantities such as past gradients, and without relying on more expensive linesearch subroutines. Our methods are theoretically sound and empirically grounded, as they are each accompanied by rigorous convergence guarantees and experiments showcasing their performance against relevant baselines. In a nutshell, this dissertation provides new algorithmic approaches and points of trade-off on the road toward scalably solving large optimization problems.

Lausanne: EPFL

2024

p. 192.

DOI : 10.5075/epfl-thesis-9906

Statistical Inference for Inverse Problems: From Sparsity-Based Methods to Neural Networks

P. N. Bohra / Director(s) : M. Unser 

In inverse problems, the task is to reconstruct an unknown signal from its possibly noise-corrupted measurements. Penalized-likelihood-based estimation and Bayesian estimation are two powerful statistical paradigms for the resolution of such problems. They allow one to exploit prior information about the signal as well as handle the noisy measurements in a principled manner. This thesis is dedicated to the development of novel signal-reconstruction methods within these paradigms, ranging from those that involve classical sparsity-based signal models to those that leverage neural networks. In the first part of the thesis, we focus on sparse signal models in the context of linear inverse problems for one-dimensional (1D) signals. As our first contribution, we devise an algorithm for solving generalized-interpolation problems with $L_p$-norm regularization. Through a series of experiments, we examine features induced by this regularization, namely, sparsity, regularity, and oscillatory behaviour, which gives us new insight about it. As our second contribution, we present a framework based on 1D sparse stochastic processes to objectively evaluate and compare the performance of signal-reconstruction algorithms. Specifically, we derive efficient Gibbs sampling schemes to compute the minimum mean-square-error estimators for these processes. This allows us to specify a quantitative measure of the degree of optimality for any given method. Our framework also provides access to arbitrarily many training data, thus enabling the benchmarking of neural-network-based approaches. The second part of the thesis is devoted to neural networks which have become the focus of much of the current research in inverse problems as they typically outperform the classical sparsity-based methods. First, we develop an efficient module for the learning of component-wise continuous piecewise-linear activation functions in neural networks. We deploy this module to train 1-Lipschitz denoising convolutional neural networks and learnable convex regularizers, both of which can be used to design provably convergent iterative reconstruction methods. Next, we design a complete Bayesian inference pipeline for nonlinear inverse problems that leverages the power of deep generative signal models to produce high-quality reconstructions together with uncertainty maps. Finally, we propose a neural-network-based spatiotemporal regularization scheme for dynamic Fourier ptychography (FP), where the goal is to recover a sequence of high-resolution images from several low-resolution intensity measurements. Our approach does not require training data and yields state-of-the-art reconstructions.

Lausanne: EPFL

2024

p. 259.

DOI : 10.5075/epfl-thesis-9824

Seeking the new, learning from the unexpected: Computational models of surprise and novelty in the brain

A. Modirshanechi / Director(s) : W. Gerstner 

Human babies have a natural desire to interact with new toys and objects, through which they learn how the world around them works, e.g., that glass shatters when dropped, but a rubber ball does not. When their predictions are proven incorrect, such as when a glass does not shatter after a fall, they feel surprised. This, in turn, impacts their subsequent decisions and makes them reconsider their beliefs, e.g., they may continue dropping the glass until they realize it does not shatter because it falls on a carpet. Similarly, human adults and other species react differently to new and surprising events compared to familiar and expected ones, possibly due to the vital importance of these events in a continuously changing world with sparse resources. The influence of novelty and surprise on the brain and behavior has been a prominent topic in neuroscience and psychology. However, quantifying surprise and novelty and their contribution to various brain functions remain unresolved and disputed. In this thesis, I take a mathematical approach to study (i) definitions of surprise and novelty as well as (ii) their computational roles in the brain. I first present an exhaustive analysis of 18 mathematical definitions of surprise, investigating their similarities, differences, and conditions that make them indistinguishable. I classify these definitions into different categories and propose a unified framework for systematic comparison of different approaches to quantifying surprise. Within this framework, I propose a formalism that distinguishes novelty from surprise. I use this mathematical distinction to construct a Reinforcement Learning (RL) model of human behavior that describes surprise as the modulator of the learning speed (‘learning from the unexpected’) and novelty as the drive of goal-directed exploration (‘seeking the new’). I test this model against behavioral and electroencephalogram (EEG) data of human participants and show that both surprise and novelty are crucial determinants of human behavior in volatile environments with sparse rewards. Then, I ask whether these results generalize to stochastic environments where novelty-driven exploration has proven suboptimal. To answer this question, I compare models of exploration driven by novelty and different surprise definitions in stochastic environments. Testing these models against the behavioral data of human participants shows that human exploration closely aligns with novelty-driven models, even when they are not optimal. This establishes novelty as a dominant drive of human goal-directed exploration. This thesis offers a comprehensive comparison of various computational models and definitions of surprise and novelty, from both mathematical and experimental points of view. Our theoretical findings allow fresh insights into previous research and lay a foundation for future theoretical and experimental studies. Moreover, our computational modeling of experimental data expands our understanding of the computational roles of surprise and novelty in learning and exploration.

Lausanne: EPFL

2024

p. 250.

DOI : 10.5075/epfl-thesis-9716

Design for demise applied to spacecraft structural panels and experiments for ClearSpace One platform

A. A. Looten / Director(s) : V. Michaud 

With growing awareness of the vulnerability of the near-Earth space region and the anticipated surge in satellite objects, efforts are underway to assess and implement various mitigation strategies. These aim to minimize the impact of space activities and establish a secure and sustainable space environment. However, challenges from knowledge uncertainties and technology gaps hinder our immediate capacity to act, particularly in adopting a design-for-demise (D4D) approach. D4D seeks to modify spacecraft design processes for the safest possible destructive reentry, employing strategies like material substitution, specific geometries, or dedicated subsystems. Initiated under a Network Partnering Initiative by the Swiss Federal Institute of Technology in Lausanne (EPFL) and the European Space Agency (ESA), this project focuses on designing and experimentally evaluating novel composite components to enhance spacecraft demisability. A comparative analysis with baseline critical systems focuses on achieving higher altitude break-up while preserving mission-relevant properties. The project primarily explores a dual strategy, involving material substitution in a benchmark system comprising an external sandwich panel and its fasteners. The first aspect examines a novel short carbon fiber reinforced polyetheretherketone (CF/PEEK) bolted joint design as a substitute for critical titanium or steel alloys. The second involves evaluating a hybrid reinforcement, combining carbon and demisable flax fibers, to replace aluminum panel skins or critical full carbon composite skins. Additionally, the integration of a thermally conductive and reactive metallic matrix filler composed of aluminum-magnesium alloy micro-powder is investigated. Demisability assessments is performed at material and lab scale component levels. This encompasses measuring material mechanical properties under static loading at room temperature and dynamic loading over a temperature range to identify their softening point. Static and dynamic reentry simulation tests, including a laboratory-scale high-temperature creep test and a plasma wind tunnel test, assess thermo-mechanico-physical property changes over uncontrolled reentry conditions and composite degradation. Results indicate the promising potential of an optimal ply-by-ply carbon-flax hybrid/epoxy reinforcement for the skin, offering a 180% ablation rate improvement starting at a lower temperature compared to CFRP. Meanwhile, the addition of the AlMg filler enhances matrix pyrolysis rate by over 10%, reducing its onset by 40°C. Joint studies reveal that stainless-steel bolts exhibit no effective demise under testing up to 800°C, whereas CF/PEEK bolts start to demise before reaching ~400°C, with superior specific tensile and shear strength within typical space mission temperature ranges. This research project represents a significant milestone in identifying and developing optimal demisable composite structures. The focus on novel material combinations through dedicated test campaigns underscores the commitment to preparing findings for space applications. The direct experiment-to-model approach not only contributes to a better understanding of composite material demise but also effectively reduces uncertainties. The ultimate goal of enhancing the safety of future space debris reentry is clearly articulated, laying an essential foundation for achieving this objective.

Lausanne: EPFL

2024

p. 177.

DOI : 10.5075/epfl-thesis-10719

Toward Wearable Biosensing by Spectroscopy-free Raman Shift Detection and Soft Optofluidics

A. Jedari Golparvar / Director(s) : S. Carrara; A. Boukhayma 

This thesis introduces spectroscopy-free Raman biosensing, which may find increasing use in the next generation of wearable devices for preventive healthcare. While wearables have made substantial advancements in detecting physical biomarkers, they have yet to effectively evaluate the biological and chemical biomarkers associated with body functions. The potential to monitor the patterns or alterations in chemical biomarkers over time presents a promising avenue for identifying disease precursors before clinical symptoms manifest, offering a window for early intervention. However, the dependence of the existing biosensors on biorecognition elements derived from natural sources, such as animals and plants, precludes a “wear and forget” operation in wearable devices. These bioreceptors, with finite lifespans outside their natural environment, progressively deteriorate over time, mandating the periodic replacement of biosensors. In contrast, the Raman effect offers a unique capability to translate the specific vibration modes of molecules into distinctive fingerprint spectra, suggesting a promising biosensing transducer without the reliance on bioreceptors. However, the instrumentation of Raman spectroscopy remains bulky and unsuitable for wearable applications. Consequently, this thesis demonstrates departure from conventional spectroscopic applications by showcasing the efficacy of Raman shift detection for non-invasive biofluid analysis, which obviates the necessity for one of the most oversized components in Raman instrumentation. First, in static measurements, we demonstrate highly sensitive and selective Raman biosensing of sweat lactate and urea through their single characteristic Raman bands. Subsequently, we engineer a soft epidermal microfluidic device and optimize its integration with Raman biosensing to facilitate in situ monitoring. Our development cycle involves systematic material selection and numerical simulations to optimize the kinetics of microfluidics for effective sweat collection, transportation, and subsequent evaporation post-sampling. Our two-step facile fabrication process utilizes vertically stacked laser-patterned soft materials. We conduct comprehensive investigations with microfluidic-assisted Raman biosensing to validate the device under stationary and dynamic fluid flow conditions. Our findings demonstrate that the microfluidics stabilizes the background of Raman spectra, negating the necessity for its removal. Finally, this thesis introduces spectroscopy-free Raman shift detection achieved by integrating a low-light CMOS image sensor coupled with an optical narrow bandpass filter into a compact optical system crafted solely from off-the-shelf optics and 3D-printed mounts. The compact dimensions of our prototype enable mounting the system on the arm for sedentary sweat analysis post-collection. Extensive testing confirms the alignment precision and optical functionality of the system surpassing those of a conventional bench-top instrument by minimizing optical loss experienced by backscattered Raman photons. A comprehensive measurement shows selectivity (over +30 sweat analytes), stability (across 90 days), and accuracy (assessed against standard methods) of Raman biosensing in ex vivo settings. Therefore, our initial findings catalyze continued exploration, given the potential of the proposed solutions to tackle prevalent challenges, thereby paving the way for advancements in miniaturizing Raman systems.

Lausanne: EPFL

2024

p. 165.

DOI : 10.5075/epfl-thesis-10696

Numerical Study of the Attosecond Free-Electron Laser Pulse Generation in the Soft X-ray Regime at the SwissFEL

L. Zhu / Director(s) : M. Seidel; S. Reiche 

Isolated attosecond pulses from an X-ray free-electron laser are in high demand for attosecond science, which enables the probing of electron dynamics by X-ray nonlinear spectroscopy and single-particle imaging. The aim of this thesis is to simulate attosecond pulse trains at the Athos beamline of the SwissFEL facility. The research project investigates the possibility of generating the shortest pulse duration by incorporating several advanced configurations at Athos, namely the modular undulator, the magnetic chicane after each module, and the transverse gradient undulator configuration. The simulation results confirm the effectiveness of these configurations in reducing the pulse duration. For a radiation wavelength of 1 nm (1240 eV), the slicing method, which is basically an energy chirp-based taper on a modular undulator, is able to produce a pulse train with an average duration of 200 attoseconds. The mode-locking method, realised by delay control through magnetic chicanes after each module, further reduced the average pulse duration to less than 100 attoseconds, exceeding the cooperation length limit. In addition, we explored the possibility of applying a linear taper within the module by incorporating a rotated transverse gradient undulator for each module. For the 1 nm radiation wavelength, a slight linear taper within the undulator module can reduce the pulse duration to 85 attoseconds. For the 4 nm (310 eV) wavelength, the slippage effect is so strong that the pulse duration first decreases and then increases within the undulator module. To solve this problem, we have proposed using a strong undulator taper within the module. A 16 % difference taper range combined with the mode-locking method can generate a pulse train with an average duration of 110 attoseconds to the end of the module. It is important to note that the results presented in this work are primarily used to demonstrate the method’s validity. Experimental results in the SwissFEL machine can differ significantly from the simulation due to many other effects. In addition to the simulation and presentation of simulation results, the thesis has briefly included the FEL theory and used the theory to analyse the simulation results, which makes the result more understanable and plausible. During the discussion of the slicing method, we presented the bunching evolution in the slicing method and suggested that the superradiance dynamics can be used to explain many simulation results in this chapter. In the chapter with TGU, we suggest that the reason for generating such short pulses is mainly because the large taper provides a large spectrum, which is beneficial for generating short pulses when doing mode-locking.

Lausanne: EPFL

2024

p. 147.

DOI : 10.5075/epfl-thesis-10691

Shear and steel-fibre reinforcement for the punching resistance of flat slabs at internal and edge columns

D. Hernández Fraile / Director(s) : A. Muttoni 

Reinforced concrete flat slabs consist of a continuous, thin concrete plate that rests on a grid of columns. The supporting surface of the columns is very small compared to the floor plan dimensions, leading to concentrations of shear forces near the columns which can trigger a punching failure at the slab-column connection. This failure mode is of brittle nature and risks triggering the progressive collapse of the structure. The first applications of this structural system date from the early 1900s, when various solutions were developed, such as the ones patented by Turner or Maillart. Both identified these concentrations of forces as a critical point that jeopardised the structural integrity of a slab, and provided column capitals to increase the supporting area. Nowadays, punching is commonly fought by introducing transverse steel reinforcement in the slab. In this context, this thesis addresses the enhancement of the resistance of flat slabs at internal and edge columns (at the building perimeter) by conventional transverse (shear) reinforcement or steel fibres. The first part of the thesis examines the punching resistance of slabs at edge columns, with and without shear reinforcement. The results of a test programme comprising two specimens with moment continuity in the direction of the load eccentricity are presented. Refined measurements were performed to capture the internal cracking of the slab and the activation of the flexural and shear reinforcement. This allowed understanding the process of failure propagation from the column front towards the free edge of the slab. Additionally, the various punching shear transfer actions and their relative contribution to the slab’s resistance were quantified. The second part of the thesis investigates the maximum punching resistance of shear-reinforced slabs at internal columns. Based on the theoretical principles of the Critical Shear Crack Theory, a refined mechanical model is proposed to evaluate the resistance of a connection by integrating the stresses developing along the failure surface (critical shear crack). A simplified analytical model is derived from this refined approach to calculate the maximum punching resistance of shear-reinforced slabs, which can also be used for slabs without shear reinforcement. A law to describe the relationship between the shear force and the shear deformations is proposed, which allows accounting for redistributions of shear forces around the support perimeter, useful for non-axisymmetric punching scenarios. The third part of the thesis analyses the contribution of fibres to the resistance of a steel fibre reinforced concrete slab as a function of their measured orientation in the concrete volume. The fibre orientation of six slabs tested in punching is evaluated and a formulation is developed to quantify the relationship between the measured fibre orientation and an isotropic distribution. Effectiveness factors for punching and flexure are derived to assess in a simplified manner the actual contribution of fibres to the flexural response and punching resistance of a slab. The proposed analytical model for punching is used in combination with the Variable Engagement Model to evaluate the contribution of steel fibres to the resistance of the investigated slabs.

Lausanne: EPFL

2024

p. 280.

DOI : 10.5075/epfl-thesis-10680

Additively manufactured stretchable zipping electrostatic actuators

G. Grasso / Director(s) : H. Shea; S. Rosset 

The use of soft and stretchable materials allows the development of adaptive robotic systems and human-machine interfaces that are more natural and comfortable to interact with. One of the application fields that benefits the most from these compliant materials is haptic feedback. The rise of Virtual and Augmented Reality applications for training, teleoperation, and entertainment purposes demands interfaces to stimulate the sense of touch with similar fidelity as visual and auditory feedback. Thanks to actuation principles exploiting flexible and stretchable polymeric materials, compliant, lightweight wearable devices providing mechanical stimuli to the user skin have been developed. Most of everyday activities would be impossible without being able to gain information about the physical properties of the surrounding environment through our fingertips, and this is reflected in the development of uncountable haptic feedback platforms for the finger. However, there is always a trade-off between intensity of mechanical output, actuation frequency bandwidth, and unobtrusiveness of the wearable hardware. One actuation principle that stands out for achieved energy density, frequency of produced stimuli, low weight, and silent operation and compactness of power supplies is zipping actuation, which exploit electrostatic forces and hydraulic coupling to produce mechanical work. An important limitation of these actuators is the lack of material solutions and fabrication processes suitable for stretchable, sub-millimetric zipping actuators for wearable haptic devices. The goal of this thesis is to fill this gap by developing additive manufacturing processes for stretchable zipping electro-static actuators. Additive fabrications enable unprecedented design flexibility, limited fabrication-related material waste, fast prototyping and adaptable fabrication processes for customized actuators. Stretchable zipping actuators based on the hydraulically amplified taxel (HAXEL) principle are fabricated by employing a technological platform based on inkjet printing, which allows thin depositions of stretchable materials. A new technical solution for the fabrication of stretchable, independently sealed fluidic pouches is presented, along with the design strategies suitable for on-skin wearable arrays for the fingertip. The presented actuators are first modelled analytically thanks to an energy-based approach capable of synthesizing electrical, mechanical and geometrical properties of the actuator into its electro-mechanical behaviour, which is validated experimentally. The fabricated stretchable HAXELs are less than 0.8 mm-thick, weight less than 25 mg, and are able to generate perceivable mechanical stimuli with a bandwidth spanning from quasi-static to 1 kHz. Actuation under 50% stretch is proven, as well as a lifetime higher than a whole week. Haptic studies on users confirmed detectable and localizable haptic stimuli, with 86% of provided haptic stimuli correctly identified by the users. In the last part of this thesis, an alternative fabrication process is developed in order to encapsulate the filling fluid directly in the printed structures, thus achieving further digital control and automation of the fabrication process. First actuators produced through the new approach are tested, thus opening the way to truly fully-printed liquid filled zipping electrostatic actuators based on thin and stretchable materials.

Lausanne: EPFL

2024

p. 135.

DOI : 10.5075/epfl-thesis-10648

Development and clinical validation of computational imaging biomarkers for neurodegenerative diseases

V. L. Ravano / Director(s) : J-P. Thiran; T. Kober 

Neurodegenerative and neuroinflammatory disorders often involve complex pathophysiological mechanisms that are – to this date – only partially understood. A more comprehensive understanding of those microstructural processes and their characterization in clinical practice are key to ensure effective and individualized patient care. Magnetic resonance imaging (MRI) has become an essential tool to assess neurological pathologies in vivo thanks to its excellent soft tissue contrast. In the last decades, a wide range of MRI clinical decision support tools have been developed, either aimed at replacing tedious and time-consuming radiological reading tasks, or at providing new insights into tissue pathology. However, the clinical adoption of these tools is limited, mainly due to the lack of robustness as a result of the large heterogeneity seen in MRI data. Among the different strategies aimed at overcoming this limitation, image harmonization techniques have the potential to improve the reliability of automated tools by generating a more homogeneous dataset. Additionally, the use of population-averaged atlases can also contribute to reducing the inter-site variability that typically characterizes complex acquisition and image processing techniques. Furthermore, by measuring a specific physical parameter, quantitative MRI (qMRI) techniques reduce inter-site variability while potentially providing additional insights into tissue pathology. This thesis aims at developing new imaging biomarkers for neurodegenerative disorders motivated by real-world clinical challenges and while keeping clinical applicability in mind. To this end, we first explore the use of conditional generative adversarial networks in an image harmonization task and investigate the effect of different reconstruction losses both on image similarity and volumetric consistency using an automated brain morphometry tool. Further pursuing the goal of reducing inter-patient variability, we propose the use of a population-averaged tractography atlas to study structural brain connectivity and validate the clincal relevance of connectivity biomarkers in three different multiple sclerosis (MS) cohorts. Focusing on MS, we further propose novel qMRI-based biomarkers quantifying the extent of microstructural alterations in white matter pathways, and their ability to explain current disability and future progression. The methodological framework established in this thesis work is then complemented with a technique using multi-parametric qMRI alteration maps to differentiate MS lesion subtypes, which provides new insights in microstructural tissue pathology.

Lausanne: EPFL

2024

p. 145.

DOI : 10.5075/epfl-thesis-10632

Global fluid simulations of plasma turbulence in stellarators

A. J. Caeiro Heitor Coelho / Director(s) : P. Ricci; J. Loizu Cisquella 

In order to cope with the decarbonization challenge faced by many countries, fusion is one of the few alternatives to fossil fuels for the production of electricity. Two devices invented in the middle of the previous century have emerged as the most promising to confine a plasma at temperatures larger than $10^7\,$K for sufficiently long times and at high densities: the tokamak and the stellarator. In these machines, fusion reactions release energy that is envisaged to be used for electricity production. Due to the lack of toroidal symmetry, the stellarator has been plagued since its beginning by high levels of transport, preventing a satisfactory confinement of the plasma. However, with the discovery of quasi-symmetry and the advent of high-performance computers, stellarators have been optimized, and recent results of the optimized stellarator Wendelstein 7-X show that it is possible to reduce the stellarator transport level to that of tokamaks. This has lead to an increasing interest in this machine, something that is also reflected in the number of stellarator private companies that appeared in the last few years. While the interest in the stellarator as a viable device for the production of energy has increased, plasma turbulence in the boundary region of this machine is still poorly understood. The main goal of this thesis is to study the turbulent dynamics of the plasma in stellarators through global, fluid, flux-driven simulations. We use the GBS code that solves the drift-reduced Braginskii equations, valid in the limit of high collisionality, typical of the boundary of magnetic fusion devices. The code is extended to accommodate non-axisymmetric magnetic fields, and as a first application we perform a set of simulations of a diverted tokamak with applied 3D perturbations (RMPs). We show that increasing the perturbation amplitude reduces the peak heat flux towards the divertor targets, hence suggesting that RMPs could be used in the future to help mitigating the heat exhaust issue. The first global fluid simulation of a stellarator is then performed. We construct a vacuum magnetic field using the theory of the Dommaschk potentials, and we taylor the simulation domain to create an island divertor stellarator configuration. The simulations show that the plasma dynamics is different from typical tokamak simulations. In particular, a large, coherent mode with low poloidal mode number is responsible for most of the transport, contrasting with the broad-band, blobby turbulence often seen in tokamaks. Moreover, the radial extension of the mode is comparable to the poloidal one, in contrast to previous estimates in tokamak geometry that predict a larger extension in the radial direction. We find out that one of the key parameters leading to these differences — coherent vs. broad-band; small-scale vs. large-scale structures — is the magnetic shear. In fact, simulations of tokamaks with very low magnetic shear share many features with the simulated stellarators (which are shearless). We further explore different stellarator configurations to conclude that not only the shear but also the ellipticity and the torsion have an effect on turbulence. A validation of the GBS code is also presented, by comparing results of simulations of the TJ-K stellarator against experimental data. As in the experiments, transport in the simulations is dominated by a large, coherent mode, with mode numbers in good agreement.

Lausanne: EPFL

2024

p. 191.

DOI : 10.5075/epfl-thesis-10601

Hearing structure in music: An empirical inquiry into listening as representation and processing

G. Cecchetti / Director(s) : M. A. Rohrmeier; S. A. Herff 

As a universal expression of human creativity, music is capable of conveying great subtlety and complexity. Crucially, this complexity is not encoded in the score or in the sounds, but is rather construed in the mind of the listener in the form of nuanced perceptual experiences, commonly referred to as “structural hearing”. While these experiences are to some extent accessible to introspection, which is made explicit in the music-theoretical discourse, the underlying cognitive mechanisms are elusive of empirical investigation. In this thesis, we conceptualise the experience of musical structure in the context of Bayesian cognition as a form of inference: namely, the inference of representations of structure as a way of making sense of music’s sensory signals. Exploiting a computational analogy with linguistic processing, we model the emergence of structural interpretations in terms of grammar-based incremental parsing. In a series of behavioural experiments, we test some crucial implications of this modelling approach: (1) the existence of representations of structure abstracted from sensory information, which we test by adapting a structural-priming paradigm to the musical case, (2) the cognitive relevance of idiom-specific syntactic categories, exemplified by the notion of harmonic function in extended-tonal harmony, (3) the time-course of cognitive computations implementing incremental parsing in real time during listening, and (4) the existence of mechanisms of retrospective reanalysis by analogy with the linguistic garden-path effect. Overall, these results contribute proofs of existence for some cornerstones of a computational- and algorithmic-level theory of structural hearing. They are compatible with an inference process implemented through parsing computations including the integration of newly encountered events into a pre-existing representation, the projection of expected events in the future, and the retrospective revision of the interpretation of past events. Building on the proposed framework, future work may further test implications of different fine-grained algorithmic models of parsing, in order to distinguish between accounts of processing similarly to how models of sentence comprehension are disambiguated in psycholinguistics.

Lausanne: EPFL

2024

p. 291.

DOI : 10.5075/epfl-thesis-10590

Influence of model uncertainty and long term deformations in action effects calculation in reinforced concrete structures

X. Malja / Director(s) : A. Muttoni 

Most codes of practice adopt a semi probabilistic design approach for the dimensioning and assessment of structures. Accordingly, structural safety is ensured by performing limit state verifications using design values determined with adequately calibrated Partial Safety Factors. Depending on the type of structure, the analysis performed and the code of practice used, structural verifications can be performed by comparing actions effects to sectional resistances or by comparing the load bearing capacity directly to the actions. Both verification methods lead to the same result for statically determinate structures, but the results can be different for statically indeterminate structures. While extensive studies have been performed to quantify the model uncertainty on the resistance side, the model uncertainties related to the calculation of actions effects and load bearing capacity in statically indeterminate structures have not been properly investigated yet. Thus, the first contribution of this thesis is to quantify this uncertainty for reinforced concrete structures by considering various mechanical models and failure modes. As there is little experimental data available on statically indeterminate systems, to perform statistical analyses, the experimental response of statically indeterminate systems is obtained by using a simple and effective technique. Practical implications are finally discussed on the basis of parametric analyses and case studies. The second contribution of this thesis is to clarify the influence of high-level sustained loading on the resistance and deformation capacity of reinforced concrete members in compression. While the detrimental effect of high-level sustained loading on the concrete compressive strength is already acknowledged in current codes of practice, its influence in terms of deformation capacity is generally neglected. Besides the uncertainty in calculating the member compressive strength due to a larger activation of the reinforcement, the deformation capacity influences also the calculation of the action effects, which is caused by forces redistribution between elements of the same structural system. On this basis, the effects of high-level sustained loading and its practical consequences are addressed in this thesis on the basis of an experimental programme which consists of 14 prismatic specimens tested under various uniaxial stress rates and a theoretical investigation using a mechanical model. The results allow clarifying the materials responses and validating the mechanical model. Practical implications are discussed based on parametric analyses performed for different concrete ages, reinforcement ratios and materials properties. The last part of the thesis focuses on updating the partial safety factors for permanent loads in road bridges by means of updated statistical distributions. To accurately estimate the sensitivity factors, in addition to permanent loads, the variability of the resistance calculation, materials strength and traffic loads is investigated. Finally, parametric analyses are performed to calibrate the partial safety factors for permanent loads. Two different partial factors are proposed for structural and non structural self weight and, by means of case studies, it is demonstrated that a sufficient level of safety is ensured, both in absolute terms and when compared to the current partial factors.

Lausanne: EPFL

2024

p. 140.

DOI : 10.5075/epfl-thesis-10574

On the Theory and Practice of Modern Secure Messaging

D. P. Collins / Director(s) : S. Vaudenay 

Billions of people now have conversations daily over the Internet. A large portion of this communication takes place via secure messaging protocols that offer “end-to-end encryption'” guarantees and resilience to compromise like the widely-used Double Ratchet protocol of Perrin and Marlinspike. This thesis explores secure messaging from a cryptographic perspective in both the analysis and improvement of existing messaging solutions as well as the design of protocols with new security and efficiency characteristics. The first half of the thesis considers communication between two parties. We first draw our attention to the impending threat of quantum computers on Diffie-Hellman-based key exchange protocols, and in particular on the widely used X3DH key exchange protocol of Perrin and Marlinspike. We propose a new deniable authenticated key exchange protocol, K-Waay, that is based on the relatively conservative plain learning-with-errors (LWE) assumption and is faster than previous proposals. We then consider active attack detection to ensure parties can detect if and when they have been compromised and impersonated by an adversary, even if messages can be delivered out-of-order like in the Double Ratchet protocol. We consider both in-band and out-of-band detection (the latter offering better security but being less convenient for users) and prove formally that immediate active attack detection is sometimes inherently expensive but, despite this, a relaxed yet meaningful notion of active attack detection can be achieved practically. The second half of this thesis then deals with communication between a dynamic group of parties. Firstly, we formalise the group administration problem where a (dynamic) portion of a given group is entrusted with additional privileges: we identify and formalise their core role of enforcing access control. We propose two protocols extending the continuous group key agreement methodology underpinning the recent IETF Messaging Layer Security (MLS) standard, and demonstrate experimentally that administration can be achieved with very little overhead for MLS. Finally, we formalise the practical Sender Keys group messaging protocol used by WhatsApp and Signal (which in fact relies on two-party communication at its core) and prove in a new security model that the core protocol structure is sound. Through our formalisation, we report some drawbacks of Sender Keys, especially in terms of its resilience to state compromise, and propose some tweaks to overcome them using standard cryptographic primitives, each of which either incurs little overhead or in fact improves practical efficiency.

Lausanne: EPFL

2024

p. 295.

DOI : 10.5075/epfl-thesis-10544

Secure and Efficient Cryptographic Algorithms in a Quantum World

L. E. Huguenin-Dumittan / Director(s) : S. Vaudenay 

Since the advent of internet and mass communication, two public-key cryptographic algorithms have shared the monopoly of data encryption and authentication: Diffie-Hellman and RSA. However, in the last few years, progress made in quantum physics — and more precisely in quantum computing — has changed the state of affairs. Indeed, since Shor’s algorithm was published in 1994, we know that both Diffie-Hellman and RSA could be broken by a quantum computer. This motivated the National Institute of Standards and Technology in the US (NIST) to launch in 2017 a call for Key-Encapsulation Mechanism (KEM) and Signature schemes that resist quantum computers, i.e. Post-Quantum schemes. An important building block that is used in the construction of most Post-Quantum KEMs is the Fujisaki-Okamoto (FO) transform, that compiles a passively secure (IND-CPA) KEM into an actively secure (IND-CCA) one. In short, the transform works by modifying the underlying decryption procedure as follows: the ciphertext is decrypted into some plaintext, which is output only if its re-encryption is equal to the input ciphertext. In this thesis, we first focus on the security of Post-Quantum KEMs. In particular, we show that it is critical that the FO transform is properly implemented and never leaks information on the decrypted plaintext unless the re-encryption check passes. More precisely, for many of the KEMs proposed to the NIST standardisation process, we demonstrate that it is possible to recover the secret key with a few thousand decryptions if the leakage mentioned above is present. We then prove that schemes based on the rank metric, such as RQC, are somewhat immune to our kind of attacks. We then focus on combiners, or how to combine several primitives together to obtain a more secure one. We introduce a construction that generalises the FO transform by taking several IND-CPA Public-Key Encryption schemes (PKEs) and outputting one IND-CCA KEM that is secure as long as one of the underlying PKEs is secure. This is an interesting property as many of the assumptions Post-Quantum cryptography is based on are relatively new and have been less studied, and are therefore more likely to suffer a devastating cryptanalysis. Then, based on the observation that the re-encryption step in the FO transform is expensive, we tackle the question of whether this can be improved. It turns out that a previous result by Gertner et al. rules out such a possibility in the classical model, in other words an IND- CPA to IND-CCA black-box transform must re-encrypt in the decryption. We generalise this impossibility result to the post-quantum setting. In a subsequent chapter, we show that if the security requirement can be lowered from IND- CCA to IND-qCCA (i.e. the adversary can only obtain a constant number q of decryptions), the re-encryption is actually not needed. We also observe that this security notion is sufficient in many applications, making this result most impactful. Using similar proof techniques, we then solve a theoretical open question and prove that IND-CPA KEMs can be used in TLS 1.3 instead of Diffie-Hellman. Finally, we present K-Waay, a Post-Quantum replacement for the X3DH key-exchange that is notably used in Signal and WhatsApp. Our protocol is faster than previous work and the only non-standard primitive used is a variant of the well-studied Frodo key-exchange.

Lausanne: EPFL

2024

p. 264.

DOI : 10.5075/epfl-thesis-10522

Optimality principles for the analysis of biological processes across scales: From enzyme kinetics to microbiome dynamics

A. Sahin / Director(s) : V. Hatzimanikatis 

Microorganisms are essential for life on Earth, performing key roles in numerous biological processes. Their influence extends across a wide spectrum, from human health and ecological balance to advancements in biotechnology and industrial applications. These powerful entities do not live in isolation but form complex communities, known as microbiomes, integral to the functioning of natural and engineered environments. Despite their importance, our understanding of how these tiny organisms form and evolve in nature is limited. Metabolism, the network of life-sustaining enzyme-catalyzed biochemical reactions within organisms, is fundamental to the evolution and functioning of microbiomes. From the microscale of cellular enzymes to the broader context of microbial communities, metabolic processes are an outcome of evolution and are thus shaped by certain design and optimality principles. Over the last decades, mathematical and computational models have been pivotal in deciphering these principles. More recently, with the substantial growth of omics data, coupled with advancements in high-throughput technologies, there is a growing necessity to develop computationally efficient frameworks that can shed light on the underlying design principles of metabolism across various scales. In this thesis, we present computational methods to understand the design and optimality principles in biological processes. We address the mathematical and biological challenges involved in their formulation and the uncertainties they introduce. Firstly, we investigated cellular enzymes through an evolutionary approach and introduced the OpEn framework to estimate optimal modes of operations of cellular enzymes, applicable to any complex enzyme mechanism. We then expanded our focus to encompass metabolic networks, devising a unifying framework for studying dynamic metabolic behavior in microorganisms. This approach addressed the uncertainty associated with the multiplicity of solutions and showed how different optimality principles and mathematical formulations lead to different dynamic trajectories. Moving to microbial communities, we introduced the ReMIND workflow for reconstructing metabolic interaction networks. Utilizing ReMIND, we investigated a range of objective functions, explored the trade-offs between metabolite exchange and biomass yields, identified metabolite hubs with high connectivity, and evaluated the effects of adding or removing species on metabolic interactions. Lastly, we investigated the spatial organization of a synthetic microbial community during colony expansion and studied the effects of environmental and biochemical perturbations on the emerging spatial patterns. Overall, the research in this thesis encompasses a broad spectrum, from cellular enzymes to microbial communities, and extends from steady-state conditions to temporal and spatial dynamics. We introduce mathematical models and methodologies that investigate and clarify the intricate design and optimality principles governing biological processes across different scales. This comprehensive exploration enhances our understanding of microbial emergence and evolution in diverse contexts.

Lausanne: EPFL

2024

p. 237.

DOI : 10.5075/epfl-thesis-10518

Experimental study and interpretative modelling of the Power Exhaust in Configurations with Multiple X-Points in TCV

S. D. A. Gorno / Director(s) : C. G. Theiler 

Nuclear fusion presents a promising clean energy source to mitigate future energy crises, with magnetic confinement fusion well-positioned to provide a baseload scenario to power future reactors. The unmitigated power exhaust of such reactors threatens its divertor region with intolerably high heat fluxes, leading to wall erosion and, subsequently, core fuel dilution and contamination. Novel power exhaust solutions are being developed to address the integration of a high performance fusion core plasma with well-protected divertor targets, should the standard Single Null configuration (SN) not scale favourably to a reactor device. This work aims to further the physics understanding of the power exhaust benefits in configurations with multiple X-points and increased scrape-off layer (SOL) connection length (L||), such as the Snowflake minus configuration (SF-), combined with neutral baffling. To further elucidate these mechanisms, a novel divertor geometry is developed with three nearby divertor X-points in the Tokamak à Configuration Variable (TCV), named the Jellyfish (JF), and the mean-field edge transport code EMC3-EIRENE is employed to interpret experimental results. The TCV Langmuir probes are extensively used to evaluate target conditions, employing an upgraded heat flux analysis. Configurations with multiple nearby divertor X-points exhibit a strong reduction in the outer target heat flux (up to 66%) and the ability to balance the strike-point distribution of heat flux, compared to a reference SN. Furthermore, an earlier detachment onset is observed as well as a local increase in radiated power in flux tubes with increased L||, as predicted by the simplified SOL model SPLEND1D. While this does not necessarily map to higher total divertor radiative losses for multiple X-point configurations, it can, at least, provide some control over the radial position of the spatial radiation distribution. Despite a radiating region located farther from the confined plasma than a reference SN, no change in core confinement is observed in multiple X-point configurations. Core effective charge measurements indicate an increase in core impurity penetration for the SF- compared to the SN and JF. Interpretative modelling using EMC3-EIRENE indicates that this increase is due to the impurity source location, rather than an intrinsic property of multiple X-point configurations. Increasing the divertor closure with gas baffles, achieved for the first time in the SF-, further enhances the target heat flux reduction, without significantly affecting the location of the inter-null radiation region or the core-divertor compatibility. Multi-spectral imaging exhibits radial striations in the emissivity of many spectral lines in the inter-null regions of multiple X-point configurations, indicative of channels of enhanced cross-field transport. Although comparisons with simulations using EMC3-EIRENE support enhanced cross-field transport for the SF-, additional transport physics is required in the model to obtain a quantitative match with experiment. Future work looks to experimentally study and simulate multiple X-point configurations under more reactor relevant conditions, moving to higher power and high confinement scenarios. The datasets collected in this thesis constitute a good starting point for power scans in simulation studies, with the promising power exhaust benefits motivating higher power experiments in TCV and in other devices.

Lausanne: EPFL

2024

p. 199.

DOI : 10.5075/epfl-thesis-10513

Single-Photon Avalanche Diode Image Sensors for Harsh Radiation Environments

M-L. Wu / Director(s) : E. Charbon 

The space industry has experienced substantial growth in recent years, leading to rapid advancements in space exploration and space-based technologies. Consequently, the study of electronics and sensor performance in extreme environments has become crucial. Light sensors play a pivotal role among the detectors utilized in space-based missions. Nonetheless, the space environment poses several challenges for these systems. Among the emerging photodetectors, the single-photon avalanche diode (SPAD) has showcased exceptional timing performance, sensitivity to low light, and scalability due to its increasing compatibility with complementary metal–oxide–semiconductor technology. To investigate the feasibility of implementing SPADs in harsh environments and improving current systems, we first focused on studying the radiation hardness of SPADs. We subjected various SPAD systems to testing using protons and neutrons, which are sources of both ionizing and non-ionizing damage. The impact of radiation on all the figures of merit of SPADs under various operating conditions involving temperature and bias was characterized. Notably, the SPADs were exposed to the highest displacement damage dose (> 1 PeV/g) ever delivered. Furthermore, we explored methods to mitigate damage post-radiation exposure by incorporating annealing steps. Multiple applications using the developed megapixel SPAD camera and individual SPAD pixels were successfully demonstrated. The findings illustrate that a well-engineered SPAD camera is capable of high dynamic range 2D imaging, making it well-suited for space-based imaging scenarios with varying light contrast scenes. Our investigation also encompassed an exploration of how the design of SPAD-based systems and potential radiation-induced damage can influence imaging performance. We presented 3D multi-object ranging utilizing the SPAD camera. Furthermore, the camera’s resolution facilitated the reconstruction of 4D light-in-flight imaging by harnessing the concept of apparent superluminal motion. Additionally, the thesis explores wide-field fluorescence lifetime imaging microscopy (FLIM) and spectral FLIM systems. These systems are integrated with machine learning algorithms for data processing, resulting in a significant reduction in processing time by over four orders of magnitude compared to conventional methods. Furthermore, we found that the sensitivity of SPADs to ionizing radiation and high avalanche gain makes them suitable for particle or radiation detection. A particle coincidence timing precision down to 15.3 ps was achieved, which is the best recorded to date. These applications possess potential for planetary exploration, astronomy, and material studies.

Lausanne: EPFL

2024

p. 144.

DOI : 10.5075/epfl-thesis-10446

Gyrokinetic simulations of turbulence in magnetic fusion plasmas using a delta-f PIC scheme with evolving background

M. Murugappan / Director(s) : L. Villard; S. Brunner 

Using the GKEngine code which simulates an electrostatic plasma with adiabatic electron response under a sheared-slab geometry, an attempt at developing a hybrid approach between the delta-f and full-f schemes to describe plasma profiles exhibiting high fluctuation amplitudes, where the assumption of the delta-f scheme breaks down will, be conducted. This is important as such a hybrid scheme has the flexibility to optimise noise reduction in the applicable plasma regimes, both in space (i.e. core or edge) and time (i.e. pre-burst or long-time relaxation). Accounting for a time-dependent background distribution function will modify the current linear quasi-neutrality equation, resulting in an additional non-linear term. Solution methods and optimised algorithms to do so will be tested. Next, a code to simulate the entire plasma profile should somehow merge both cases of open and closed field-lines. The code PICLS from IPP Garching was developed to describe a 1-dimensional plasma with open field-lines, solved using the full-f scheme with kinetic electrons. This is the code that will most probably be the base on which further features are to be added upon under the TSVV Task. The current work with the GKEngine which employs the delta-f scheme under closed field-lines configuration will serve as a test bed for new features, or could eventually be part of the final end-product. Features to be added that are relevant to this thesis include, firstly, the aforementioned delta-f to full-f transition mechanism. And secondly, the inclusion of both closed and open field-line regions in a simplified cylindrical geometry, with the goal of being able to simulate limiter configurations encompassing core and edge/SOL plasmas. Further features also include the GPU-enabling of PICLS for heavy computation, and the development of a non-linear polarisation equation solver. For the former, support will be searched from the future Advanced Computing Hub (ACH) of EUROfusion and, for the latter, the involvement of IPP Garching will be essential.

Lausanne: EPFL

2024

p. 192.

DOI : 10.5075/epfl-thesis-10414

Advanced Silicon and SWIR Single-Photon Avalanche Diodes: Design, Simulation, and Characterization

E. Kizilkan / Director(s) : E. Charbon 

Low-level light detection with high spatial and timing accuracy is a growing area of interest by virtue of applications such as light detection and ranging (LiDAR), biomedical imaging, time-resolved Raman spectroscopy, and quantum applications. Single-photon avalanche diodes (SPAD) offering the capability of detecting picosecond transients at the single-photon level are becoming a new trend for these needs. Silicon-based SPADs have demonstrated superior performance in the visible wavelength window benefiting from the mature complementary-oxide-metal semiconductor technology. Nevertheless, silicon-based SPADs exhibit a significant efficiency drop in the near-infrared (NIR) and short-wave infrared (SWIR) regions due to their bandgap (1.1 eV) and since silicon is an indirect bandgap material. Extending SPAD’s efficiency towards the NIR/SWIR region is a key requirement for eye-safe LiDAR and fiber optic-based telecommunication applications. This thesis explores high-performance single-photon detectors using Silicon and InGaAs/InP-based SPAD technologies for QKD and LiDAR applications. It aims to develop compact detectors operable at near room temperature. The research extensively characterizes SAG-based and double-diffusion InGaAs/InP SPADs, alongside Silicon SPADs in 55 nm BCD technology, assessing DCR, PDP, timing jitter, and uniformity. The SAG-based design offers a novel InGaAs/InP SPAD structure, reducing the electric field at the edges and improving DCR and uniformity. Moreover, this method does not utilize the standard shallow diffusion and improves the fill factor of the SPAD. The thesis also investigates smaller diameter devices for further DCR reduction. In addition, the thesis introduces a unique simulation environment for PDP, DCR, IV, and breakdown voltage of SPADs using TCAD tools and focusing on 2D simulations. The simulation successfully predicts these performance metrics, allowing an easier and more robust design environment. It will be useful to optimize the device performance for specific target metrics and reduce fabrication iterations to achieve the best performance. Apart from SAG-based InGaAs/InP SPADs, double-diffusion-based InGaAs/InP SPADs are also examined, using both shallow and deep diffusion processes for device fabrication. This technique helps in managing the electric field within the SPAD, thereby reducing-edge breakdown. The research explores the impact of diffusion depths on device performance, especially DCR. Adjusting these depths affects the electric field and TAT generation, influencing the SPAD’s efficiency. The work also looks forward to enhancing SPAD performance and developing SPAD arrays integrated with ROIC. Finally, the thesis explores the implementation and advantages of Silicon SPADs. Leveraging mature silicon fabrication technologies, Silicon SPADs offer ease of implementation, advanced back-end processing, and low defect ratios. Despite their limited efficiency in the NIR range, the benefits of monolithic integration, cost-effectiveness, and widespread availability make them an attractive alternative. Four different SPAD designs were fabricated using 55 nm BCD technology, addressing the challenges and solutions in designing with standard doping layers. A particular focus is given to deep SPAD designs with and without a PW layer, revealing that the inclusion of the PW layer significantly improves efficiency.

Lausanne: EPFL

2024

p. 121.

DOI : 10.5075/epfl-thesis-10381

Network time series forecasting in photovoltaics power production

J. Simeunovic / Director(s) : P. Frossard; R. E. Carrillo Rangel 

Accurate forecasting of photovoltaic (PV) power production is crucial for the integration of more renewable energy sources into the power grid. PV power production is highly intermittent, due to the stochastic cloud behaviour and cloud dynamics. Previous works focused on predicting the dynamics by combining inputs from ground-based cameras, satellite images and numerical weather predictions with physical or statistical models. However, they are costly or have coarse resolution. The focus of this thesis is to advance the state-of-the-art on short-term solar resources forecasting. We take past PV power from a dense network of PV stations as the main input for forecasting. We leverage a graph signal processing perspective and model multi-site PV production data as signals on a graph to capture their spatio-temporal dependencies and achieve higher spatial and temporal resolution forecasts. In our first contribution two graph neural networks, based on graph convolutional layers to exploit the spatial information, are proposed for deterministic multi-site PV forecasting: the graph-convolutional long short-term memory (GCLSTM) and the graph-convolutional transformer (GCTrafo). These methods rely only on production data and exploit the intuition that PV systems provide a network of virtual weather stations. We show that the proposed models outperform state-of-the-art methods for intra-day forecasting with high spatial and temporal resolution. However, they are difficult to interpret. Utility operators and grid managers could use insights derived from interpretable models to make more informed decisions. Therefore, we introduce a novel interpretable temporal-spatial multi-windows graph attention network (TSM-GAT) for predicting future PV power. TSM-GAT captures different dynamical spatio-temporal correlations for different parts of the forecasting horizon. Thus, it is possible to interpret which PV stations have the most influence when making a prediction for short-, medium- and long-term intra-day forecasts. We show that the proposed model outperforms multi-site state-of-the-art models for four to six hours ahead predictions and that it yields predicted signals with a closer shape to ground truth. Although machine learning models for PV production achieve high resolution forecasts without loss in accuracy using only PV power data, they are often black box models, leading to overly smoothed predictions. These models might overlook the impact of variable weather conditions on PV power, indicating the model cannot fully capture cloud dynamics. Since physically informed neural networks have shown great success when modelling physical phenomena, we introduce a physics-informed graph neural network (PING) for forecasting the future concentrations in the advection-diffusion processes on an irregular grid. PING captures the dynamics by estimating historical velocities. It outperforms baseline models for forecasting cloud concentration index and when combined with GCLSTM outperforms baselines for forecasting PV production. In this thesis, we introduce state-of-the-art models for high resolution and interpretable PV power production forecasts. Even though the accuracy of the physics-informed model is not better than state of the art, it provides insight into the physical behaviour of the cloud dynamics. This insight into cloud dynamics holds potential for future integration with deep learning models to further enhance forecasting capabilities.

Lausanne: EPFL

2024

p. 166.

DOI : 10.5075/epfl-thesis-10335

Charge-Transfer States in Organic Nanowires

L. A. Chassat / Director(s) : H. Frauenrath 

Charge separation processes in organic semiconductors play a pivotal role in diverse applications ranging from photovoltaics to photocatalysis. Understanding these mechanisms, particularly the role of hybrid charge-transfer (CT) states, is essential for advancing these technologies. This thesis presents an extensive investigation into organic 1D aggregates, specifically dicyanoperylene bisimide derivatives imide-substituted with oligopeptide-polymer chains, and their emerging unusual charged states. Emphasis is placed on understanding the mechanisms leading to the formation of long-lived radicals. The study integrates experimental, computational, and theoretical approaches, offering a comprehensive insight into the photophysical properties of these nanowires. Initially, an in-depth examination of the structural and electronic properties of these nanowires is conducted. Notably, it reveals that the radicals within these systems are not only photogenerated but also exhibit an inherent stability. Investigations also confirm the self-doping character of these nanowires, hinting at a role of the oligopeptide substituent in this process. Further explorations into the magnetic properties of these nanowires uncover evidence of antiferromagnetic coupling among like-charged radicals, providing a potential explanation for the unexpected stabilization of these radical ions. The role of collective effects in the phenomenon is further supported by findings suggesting that while charge separation might not require extensive aggregation, the stabilization of polarons is dependent on it. Computational studies shed light on the CT interactions between the lateral substituents and the chromophores at the molecular level. This investigation demonstrates that the CT states in these systems are coupled with both the ground state and the local Frenkel excited state, facilitating the efficient formation of radical ion pairs through either continuous thermally-assisted pathways or photoexcitation. Finally, the thesis explores the kinetics of the decay process, following excitation and thus photopumping of the polaron population, across both short and long time scales. Combined with the computational results and theoretical insights, these investigations allow the derivation of a conceptual model explaining the properties of the radical anion population in these nanowires. This research establishes the oligopeptide-dicyanoperylene bisimide nanowires, and more generally, 1D donor-acceptor aggregates, as promising model systems for advancing the understanding of the CT processes at the molecular level.

Lausanne: EPFL

2024

p. 159.

DOI : 10.5075/epfl-thesis-10163

A Cavity-Microscope for Quantum Simulations with Locally-Controllable All-to-All Interactions

N. J. Sauerwein / Director(s) : J-P. Brantut 

This thesis presents the development, construction, and benchmark of an experimental platform that combines cold fermionic 6Li atoms with locally controllable light-matter interactions. To enable local control, a new device, the cavity-microscope, was created. This device combines a high-finesse cavity with an on-axis high numerical aperture microscope. The cavity allows for strong interactions between photons and atoms, while the microscope enables high-resolution spatial engineering of the optical properties of the atoms. This is achieved by coupling the excited state of the effective two-level system to an auxiliary state with the help of a control laser beam that is focused to a small spot by the cavity-microscope. We provide an overview of our experimental apparatus, with a particular focus on the design and fabrication process for the cavity-microscope. This includes the vibration-damping platform of the cavity-microscope, which helps to reduce the mechanical resonances of the mounting structure. Additionally, we discuss the progress of our newly developed next-generation cavity-microscope, which simplifies the optical design and improves the performance of our current device. We provide a comprehensive description of the Hamiltonian that governs our laboratory system with a particular focus on the various measurement techniques that enable us to analyze the atom-cavity system. In particular, we demonstrate that the measurement of the cavity’s dispersive shift can be used to infer in real-time different properties of the atomic cloud, such as atom count, temperature, and internal-state occupation. We demonstrate the capability of our cavity-microscope to manipulate the interactions between light and matter by inferring the 3D density profile of the trapped atom cloud using the scanning probe technique. In detail, the control is achieved by a combination of Floquet and wavefront engineering of the control beam. With a spatial light modulator, we correct optical aberrations of the cavity-microscope based on a Hartmann–Shack scheme directly on the atomic cloud. In our experiment, we realize an all-to-all interacting, disordered spin system by subjecting the atomic cloud in our cavity to controllable quasi-random light shifts. By spectroscopically probing the low-energy excitations of the system, we explore the competition of interactions with disorder and show disorder-induced breaking of the strong collective coupling. Finally, we investigate the essential requirements for achieving control over high-rank cavity-mediated all-to-all interaction in our system. This control is crucial for enabling accurate quantum simulations of quantum gravity using the holographic duality of the Sachdev–Ye–Kitaev (SYK) model. To validate our findings, we performed two separate numerical experiments that demonstrate the robustness of our results.

Lausanne: EPFL

2024

p. 172.

DOI : 10.5075/epfl-thesis-10108

Beyond fine-tuning: LoRA modules boost near-OOD detection and LLM security

E. Salimbeni; F. Craighero; R. Khasanova; M. Vasic; P. Vandergheynst 

Under resource constraints, LLMs are usually fine- tuned with additional knowledge using Parameter Efficient Fine-Tuning (PEFT), using Low-Rank Adaptation (LoRA) modules. In fact, LoRA injects a new set of small trainable matrices to adapt an LLM to a new task, while keeping the latter frozen. At deployment, LoRA weights are subsequently merged with the LLM weights to speed up inference. In this work, we show how to exploit the unmerged LoRA’s embedding to boost the performance of Out-Of-Distribution (OOD) detectors, especially in the more challenging near- OOD scenarios. Accordingly, we demonstrate how improving OOD detection also helps in characterizing wrong predictions in downstream tasks, a fundamental aspect to improve the reliability of LLMs. Moreover, we will present a use-case in which the sensitivity of LoRA modules and OOD detection are employed together to alert stakeholders about new model updates. This scenario is particularly important when LLMs are out-sourced. Indeed, test functions should be applied as soon as the model changes the version in order to adapt prompts in the downstream applications. In order to validate our method, we performed tests on Multiple Choice Question Answering datasets, by focusing on the medical domain as a fine-tuning task. Our results motivate the use of LoRA modules even after deployment, since they provide strong features for OOD detection for fine-tuning tasks and can be employed to improve the security of LLMs.

2024

7th Deep Learning Security and Privacy Workshop, San Francisco, CA, May 23, 2024.

Towards improving full-length ribosome density prediction by bridging sequence and graph-based representations

M. V. Nallapareddy; F. Craighero; C. Gobet; F. Naef; P. Vandergheynst 

Translation elongation plays an important role in regulating protein concentrations in the cell, and dysregulation of this process has been linked to several human diseases. In this study, we use data from ribo-seq experiments to model ribosome dwell times, and in turn, predict the speed of translation. The proposed method, RiboGL, combines graph and recurrent neural networks to account for both graph and sequence-based features. The model takes a mixed graph representing the secondary structure of the mRNA sequence as input, which incorporates both sequence and structure codon neighbors. In our experiments, RiboGL greatly outperforms the state-of-the-art RiboMIMO model for ribosome density prediction. We also conduct multiple ablation studies to justify the design choices made in building the pipeline. Additionally, we use gradient-based interpretability to understand how the codon context and the structural neighbors affect the ribosome dwell time at the A site. By individually analyzing the genes in the dataset, we elucidate how structure neighbors could also potentially play a role in defining the ribosome dwell times. Importantly, since structure neighbors can be far away in the sequence, a recurrent model alone could not easily extract this information. This study lays the foundation for understanding how the mRNA secondary structure can be exploited for dwell time prediction, and how in the future other graph modalities such as features from the nascent polypeptide can be used to further our understanding.

2024

DOI : 10.1101/2024.04.08.588507

The impact of different methods of increasing the intensity of compassion in engineering ethics cases

N. Kotluk; R. Tormey 

Despite the growing interest in emotions in engineering education, empirical research on incorporating them into engineering ethics education is limited. Therefore, we designed this experimental study to assess how different methods for integrating compassion into engineering ethics cases influenced the intensity of compassion associated with the protagonists of the cases. We utilised modified versions of the Engineering and Science Issues Test (ESIT) cases, employing three methods to intensify compassion associated with the cases’ protagonists: (i) implicit induction, (ii) explicit expression, and (iii) through the description of severe consequences. The participants (n = 415), predominantly engineering students (90%), were divided into one control group and three experimental groups. Results indicated that all three methods increased the intensity of compassion in the cases. However, the implicit method had a relatively weaker impact than the other two methods which had similar effects on the intensity of compassion. Other emotions did not seem to be impacted by the changes. This study provides valuable insights into effective methods to increase the intensity of compassion in engineering ethics cases without affecting other emotions.

2024-04-13

DOI : 10.1080/03043797.2024.2341758

Catalytic Enantioselective Synthesis of Inherently Chiral Macrocycles by Dynamic Kinetic Resolution

Q-L. Lu; X-D. Wang; S. Tong; J. Zhu; M-X. Wang 

Kinetically fast racemization of chiral substrates through an achiral intermediate and enantioselective functionalization of one of the enantiomeric substrates forms the basis of the dynamic kinetic resolution (DKR) of centrally chiral molecules. We report herein DKR of inherently chiral macrocycles through enantioselective alkylation of one of the two rapidly interconverting conformers. Reaction of heteracalixaromatics with bromomethylarenes in the presence of a catalytic amount of Cinchonine- derived chiral phase transfer catalyst (PTC) affords inherently chiral O- alkylated products in 90%−99% yields with up to 95% enaniomeric excess. Density functional theory calculations indicate that a host−guest-like interaction between the macrocyclic substrate and catalyst effectively differentiates the reactivity of two enantiomers devoid of chiral elements.

ACS Catalysis

2024

Vol. 14 , num. 7, p. 5140-5146.

DOI : 10.1021/acscatal.4c00598

Rock Anisotropy Promotes Hydraulic Fracture Containment at Depth

G. Lu; S. Momeni; C. Peruzzo; F-E. Moukhtari; B. Lecampion 

Journal of Geophysical Research: Solid Earth

2024-04-11

Vol. 129 , num. 4, p. e2023JB028011.

DOI : 10.1029/2023JB028011

Lippmann Photography: Past, Present, and Future

A. Latty; A. Hoffet; N. Isaac; P. Prandoni 

The purpose of this project was to bring to a wider public an almost forgotten technique for color photography, invented by Gabriel Lippmann in 1892 and rewarded with a Nobel prize in 1908. The project was born out of a longstanding cooperation between EPFL and the Elysée photography museum in Lausanne, which holds the largest collection of original Lippmann plates, and it was crowned by an extremely successful Lippmann photography exhibition at Plateforme10 in March 2023. This work was made possible by an SNF Agora grant.

2023-07-09

FLO:RE – A new floor system made of reused reinforced concrete and steel elements

N. J. Bertola; C. M. Küpfer; M. Bastien Masse; C. Fivet 

Carefully extracting reinforced concrete (RC) elements from soon-to-be demolished structures and reusing them as load-bearing components is an emerging circular low-carbon alternative to building new structures. As floor construction typically accounts for the most upfront carbon footprint of buildings, this paper presents the design, structural verifications and construction process of FLO:RE, a new floor system built with reused saw-cut RC slab elements and steel beams. To value all preexisting properties, the new system reuses the RC elements in bending, taking advantage of the existing steel reinforcement. The life-cycle assessment (LCA) shows that the upfront carbon footprint of the reused system can be as low as 5 kgCO2,eq/m2, reducing by up to 94 % compared to conventional RC flat slabs. The construction and monitoring of a 30-m2 mock-up demonstrate the new-system construction ease and structural performance. This study proves the technical feasibility of reusing old RC slab elements in new floor systems.

Proceedings of the IABSE Symposium 2024

2024-04-10

IABSE Symposium 2024, Manchester, UK, April 10-12, 2024.

p. 1092-1099

MaskCLR: Attention-Guided Contrastive Learning for Robust Action Representation Learning

M. O. A. Abdelfattah; M. Hassan; A. Alahi 

Current transformer-based skeletal action recognition models tend to focus on a limited set of joints and low-level motion patterns to predict action classes. This results in significant performance degradation under small skeleton perturbations or changing the pose estimator between training and testing. In this work, we introduce MaskCLR, a new Masked Contrastive Learning approach for Robust skeletal action recognition. We propose an Attention-Guided Probabilistic Masking strategy to occlude the most important joints and encourage the model to explore a larger set of discriminative joints. Furthermore, we propose a Multi-Level Contrastive Learning paradigm to enforce the representations of standard and occluded skeletons to be class-discriminative, i.e., more compact within each class and more dispersed across different classes. Our approach helps the model capture the high-level action semantics instead of low-level joint variations, and can be conveniently incorporated into transformer based models. Without loss of generality, we combine MaskCLR with three transformer backbones: the vanilla transformer, DSTFormer, and STTFormer. Extensive experiments on NTU60, NTU120, and Kinetics400 show that MaskCLR consistently outperforms previous state-of-the-art methods on standard and perturbed skeletons from different pose estimators, showing improved accuracy, generalization, and robustness.

Proceedings of the IEEE/CVF conference on Computer Vision and Pattern Recognition (CVPR), 2024

2024-06-17

IEEE Conference on Computer Vision and Pattern Recognition (CVPR), Seattle, Washington, USA, June 17-21, 2024.

Social-Transmotion: Promptable Human Trajectory Prediction

S. Saadatnejad; Y. Gao; K. Messaoud Ben Amor; A. Alahi 

Accurate human trajectory prediction is crucial for applications such as autonomous vehicles, robotics, and surveillance systems. Yet, existing models often fail to fully leverage the non-verbal social cues human subconsciously communicate when navigating the space. To address this, we introduce Social-Transmotion, a generic Transformer-based model that exploits diverse and numerous visual cues to predict human behavior. We translate the idea of a prompt from Natural Language Processing (NLP) to the task of human trajectory prediction, where a prompt can be a sequence of x-y coordinates on the ground, bounding boxes in the image plane, or body poses in either 2D or 3D. This, in turn, augments trajectory data, leading to enhanced human trajectory prediction. Using masking technique, our model exhibits flexibility and adaptability by capturing spatiotemporal interactions between agents based on the available visual cues. We delve into the merits of using 2D versus 3D poses, and a limited set of poses. Additionally, we investigate the spatial and temporal attention map to identify which keypoints and frames of poses are vital for optimizing human trajectory prediction. Our approach is validated on multiple datasets, including JTA, JRDB, Pedestrians and Cyclists in Road Traffic, and ETH-UCY. The code is publicly available: https://github.com/vita-epfl/social-transmotion.

2024-05-01

International Conference on Learning Representations (ICLR), Vienna, Austria, May 7-11, 2024.

Modeling Mode-Dependent Lane Discipline in Hybrid Traffic

G. Anagnostopoulos; N. Geroliminis 

Complex interactions can be observed in hybrid transportation systems, where cars share the same road space with other modes such as motorcycles, bicycles or even e-scooters. In this work we further built upon the concept of mode dependent lane discipline. Mode dependent lane discipline means that motorcycles do not necessarily follow the predefined lanes and may form emergent, virtual lanes in the available free spaces without any prior agreement in a self-organized manner. The other modes, such as cars, follow the lanes as given by the infrastructure. This is different than the traditional dualism between lane-based and lane-free traffic. Motivated from empirical findings, our modelling approach draws inspiration both from vehicular, as well as from pedestrian dynamics literature. At the same time, we recognize that motorcycles are neither pedestrians nor cars, as they have their own special features. Therefore, there is a need for dedicated methods that are not available off-the-shelf. Also, given that our detailed observations come from an urban context, even standard car-following models that have been mainly developed with freeways in mind, are not adequate for reproducing the observed phenomena and consequently we make a first step towards revisiting traffic flow dynamics in general. We utilize high accuracy trajectories from the congested city center of Athens that have been collected from a swarm of drones through the pNEUMA experiment.

2024

TRB Transportation Research Board 103d Annual Meeting, Washington, DC, USA, January 7-11, 2024.

When Your AI Becomes a Target: AI Security Incidents and Best Practices

K. Grosse; L. Bieringer; T. R. Besold; B. Biggio; A. Alahi 

In contrast to vast academic efforts to study AI security, few real-world reports of AI security incidents exist. Released incidents prevent a thorough investigation of the attackers’ motives, as crucial information about the company and AI application is missing. As a consequence, it often remains unknown how to avoid incidents. We tackle this gap and combine previous reports with freshly collected incidents to a small database of 32 AI security incidents. We analyze the attackers’ target and goal, influencing factors, causes, and mitigations. Many incidents stem from non-compliance with best practices in security and privacy-enhancing technologies. In the case of direct AI attacks, access control may provide some mitigation, but there is little scientific work on best practices. Our paper is thus a call for action to address these gaps.

Proceedings of the AAAI Conference on Artificial Intelligence

2024-03-24

Proceedings of the 38th AAAI Conference on Artificial Intelligence, Vancouver, Canada, February 20-27, 2024.

p. 23041-23046

DOI : 10.1609/aaai.v38i21.30347

Adolescent Stress-Induced Ventral Hippocampus Redox Dysregulation Underlies Behavioral Deficits and Excitatory/Inhibitory Imbalance Related to Schizophrenia

T. Santos-Silva; C. F. B. Lopes; D. Hazar Ülgen; D. A. Guimarães; F. S. Guimarães et al. 

Background and hypothesis: Redox dysregulation has been proposed as a convergent point of childhood trauma and the emergence of psychiatric disorders, such as schizophrenia (SCZ). A critical region particularly vulnerable to environmental insults during adolescence is the ventral hippocampus (vHip). However, the impact of severe stress on vHip redox states and their functional consequences, including behavioral and electrophysiological changes related to SCZ, are not entirely understood. Study design: After exposing adolescent animals to physical stress (postnatal day, PND31-40), we explored social and cognitive behaviors (PND47-49), the basal activity of pyramidal glutamate neurons, the number of parvalbumin (PV) interneurons, and the transcriptomic signature of the vHip (PND51). We also evaluated the impact of stress on the redox system, including mitochondrial respiratory function, reactive oxygen species (ROS) production, and glutathione (GSH) levels in the vHip and serum. Study results: Adolescent-stressed animals exhibited loss of sociability, cognitive impairment, and vHip excitatory/inhibitory (E/I) imbalance. Genome-wide transcriptional profiling unveiled the impact of stress on redox system- and synaptic-related genes. Stress impacted mitochondrial respiratory function and changes in ROS levels in the vHip. GSH and glutathione disulfide (GSSG) levels were elevated in the serum of stressed animals, while GSSG was also increased in the vHip and negatively correlated with sociability. Additionally, PV interneuron deficits in the vHip caused by adolescent stress were associated with oxidative stress. Conclusions: Our results highlight the negative impact of adolescent stress on vHip redox regulation and mitochondrial function, which are partially associated with E/I imbalance and behavioral abnormalities related to SCZ.

Schizophrenia Bulletin

2024

p. 1-12.

DOI : 10.1093/schbul/sbae033

Intermediate Address Space: virtual memory optimization of heterogeneous architectures for cache-resident workloads

Q. Liu; D. Huang; L. M. Costero Valero; M. Zapater Sancho; D. Atienza Alonso 

The increasing demand for computing power and the emergence of heterogeneous computing architectures have driven the exploration of innovative techniques to address current limitations in both the compute and memory subsystems. One such solution is the use of \textit{Accelerated Processing Units} (APUs), processors that incorporate both a \textit{central processing unit} (CPU) and an \textit{integrated graphics processing unit} (iGPU). However, the performance of both APU and CPU systems can be significantly hampered by address translation overhead, leading to a decline in overall performance, especially for cache-resident workloads. To address this issue, we propose the introduction of a new \textit{intermediate address space} (IAS) in both APU and CPU systems. IAS serves as a bridge between \textit{virtual address} (VA) spaces and \textit{physical address} (PA) spaces, optimizing the address translation process. In the case of APU systems, our research indicates that the iGPU suffers from significant \textit{translation look-aside buffer} (TLB) misses in certain workload situations. Using an IAS, we can divide the initial address translation into front- and back-end phases, effectively shifting the bottleneck in address translation from the cache side to the memory controller side, a technique that proves to be effective for cache-resident workloads. Our simulations demonstrate that implementing IAS in the CPU system can boost performance by up to 40\% compared to conventional CPU systems. Furthermore, we evaluate the effectiveness of APU systems, comparing the performance of IAS-based systems with traditional systems, showing up to a 185\% improvement in APU system performance with our proposed IAS implementation. Furthermore, our analysis indicates that over 90\% of TLB misses can be filtered by the cache, and employing a larger cache within the system could potentially result in even greater improvements. The proposed IAS offers a promising and practical solution to enhance the performance of both APU and CPU systems, contributing to state-of-the-art research in the field of computer architecture.

ACM Transactions on Architecture and Code Optimization

2024-04-20

DOI : 10.1145/3659207

Self-catalysed frontal polymerisation enables fast and low-energy processing of fibre reinforced polymer composites

J. Staal; B. Caglar; V. Michaud 

Frontal polymerisation has the potential to bring unprecedented reductions in energy demand and process time to produce fibre reinforced polymer composites. Production of epoxy-based fibre reinforced polymer parts with high fibre volume content, commonly encountered in industry, is however hindered by the heat sink created by the fibres and the mould, overcoming the heat output of the chemical reaction, thus preventing front propagation. We propose a novel self-catalysed frontal polymerisation manufacturing method based on the integration of thin resin channels in thermal contact with the composite stack as a strategy for low-energy production of high fibre volume fraction polymer composites without the need for a continuous energy input. Frontal polymerisation inside the resin channel proceeds faster and preheats the fabric stack, thus catalysing the process. Parts with up to 60% fibre content are successfully produced independently of the sample thickness. Fillers added within the resin channels provide means to tailor the frontal polymerisation process kinetics. The parts have a significantly higher glass transition temperature than those produced in a conventional oven, and comparable mechanical properties while energy consumption is reduced by over 99.5%.

Composites Science and Technology

2024

Vol. 251 , num. 110584.

DOI : 10.1016/j.compscitech.2024.110584

FETCH: A Fast and Efficient Technique for Channel Selection in EEG Wearable Systems

A. Amirshahi; J. Dan; J. A. Miranda Calero; A. Aminifar; D. Atienza Alonso 

The rapid development of wearable biomedical systems now enables real-time monitoring of electroencephalography (EEG) signals. Acquisition of these signals relies on electrodes. These systems must meet the design challenge of selecting an optimal set of electrodes that balances performance and usability constraints. The search for the optimal subset of electrodes from a larger set is a problem with combinatorial complexity. While existing research has primarily focused on search strategies that only explore limited combinations, our methodology proposes a computationally efficient way to explore all combinations. To avoid the computational burden associated with training the model for each combination, we leverage an innovative approach inspired by few-shot learning. Remarkably, this strategy covers all the wearable electrode combinations while significantly reducing training time compared to retraining the network on each possible combination. In the context of an epileptic seizure detection task, the proposed method achieves an AUC value of 0.917 with configurations using eight electrodes. This performance matches that of prior research but is achieved in significantly less time, transforming a process that would span months into a matter of hours on a single GPU device. Our work allows comprehensive exploration of electrode configurations in wearable biomedical device design, yielding insights that enhance performance and real-world feasibility.

2024-04-04

Conference on Health, Inference, and Learning, NewYork, US, June 27-28, 2024.

Mitigating Object Dependencies: Improving Point Cloud Self-Supervised Learning through Object Exchange

Y. Wu; T. Zhang; W. Ke; c. Qiu; S. Süsstrunk et al. 

In the realm of point cloud scene understanding, particularly in indoor scenes, objects are arranged following human habits, resulting in objects of certain semantics being closely positioned and displaying notable inter-object correlations. This can create a tendency for neural networks to exploit these strong dependencies, bypassing the individual object patterns. To address this challenge, we introduce a novel self-supervised learning (SSL) strategy. Our approach leverages both object patterns and contextual cues to produce robust features. It begins with the formulation of an object-exchanging strategy, where pairs of objects with comparable sizes are exchanged across different scenes, effectively disentangling the strong contextual dependencies. Subsequently, we introduce a context-aware feature learning strategy, which encodes object patterns without relying on their specific context by aggregating object features across various scenes. Our extensive experiments demonstrate the superiority of our method over existing SSL techniques, further showing its better robustness to environmental changes. Moreover, we showcase the applicability of our approach by transferring pre-trained models to diverse point cloud datasets.

2024-04-11

Computer Vision and Pattern Recognition (CVPR), Seattle, USA, June 17-21, 2024.

TTool: A Supervised Artificial Intelligence-Assisted Visual Pose Detector for Tool Heads in Augmented Reality Woodworking

A. Settimi; Chutisilp Naravich; F. Aymanns; J. Gamerro; Y. Weinand 

We present TimberTool (TTool v2.1.1), a software designed for woodworking tasks assisted by augmented reality (AR), emphasizing its essential function of the real-time localization of a tool head’s poses within camera frames. The localization process, a fundamental aspect of AR-assisted tool operations, enables informed integration with contextual tracking, facilitating the computation of meaningful feedback for guiding users during tasks on the target object. In the context of timber construction, where object pose tracking has been predominantly explored in additive processes, TTool addresses a noticeable gap by focusing on subtractive tasks with manual tools. The proposed methodology utilizes a machine learning (ML) classifier to detect tool heads, offering users the capability to input a global pose and utilizing an automatic pose refiner for final pose detection and model alignment. Notably, TTool boasts adaptability through a customizable platform tailored to specific tool sets, and its open accessibility encourages widespread utilization. To assess the effectiveness of TTool in AR-assisted woodworking, we conducted a preliminary experimental campaign using a set of tools commonly employed in timber carpentry. The findings suggest that TTool can effectively contribute to AR-assisted woodworking tasks by detecting the six-degrees-of-freedom (6DoF) pose of tool heads to a satisfactory level, with a millimetric positional error of 3.9 ± 1 mm with possible large room for improvement and 1.19 ± 0.6° for what concerns the angular accuracy.

applied sciences

2024-04-03

Vol. 14 , num. 3011, p. 1-27.

DOI : 10.3390/app14073011

Near-Zero Parasitic Shift Flexure Pivots Based on Coupled n-RRR Planar Parallel Mechanisms

L. B. Tissot-Daguette; F. Cosandier; E. Thalmann; S. Henein 

Flexure pivots, which are widely used for precision mechanisms, generally have the drawback of presenting parasitic shifts accompanying their rotation. The known solutions for canceling these undesirable parasitic translations usually induce a loss in radial stiffness, a reduction of the angular stroke, and nonlinear moment–angle characteristics. This article introduces a novel family of kinematic structures based on coupled n-RRR planar parallel mechanisms, which presents exact zero parasitic shifts while alleviating the drawbacks of some known pivoting structures. Based on this invention, three symmetrical architectures have been designed and implemented as flexure-based pivots. The performance of the newly introduced pivots has been compared with two known planar flexure pivots having theoretically zero parasitic shift via Finite Element models and experiments performed on plastic mockups. The results show that the newly introduced flexure pivots are an order of magnitude radially stiffer than the considered pivots from the state-of-the-art while having equivalent angular strokes. To experimentally evaluate the parasitic shift of the novel pivots, one of the architectures was manufactured in titanium alloy using wire-cut electrical discharge machining. This prototype exhibits a parasitic shift under 1.5 µm over a rotation stroke of ±15 deg, validating the near-zero parasitic shift properties of the presented designs. These advantages are key to applications such as mechanical time bases, surgical robotics, or optomechanical mechanisms.

Journal of Mechanisms and Robotics

2024-04-09

Vol. 16 , num. 11, p. 111006.

DOI : 10.1115/1.4065074

Toward Reliable Human Pose Forecasting With Uncertainty

S. Saadatnejad; M. Mirmohammadi; M. Daghyani; P. Saremi; Y. Z. Benisi et al. 

Recently, there has been an arms race of pose forecasting methods aimed at solving the spatio-temporal task of predicting a sequence of future 3D poses of a person given a sequence of past observed ones. However, the lack of unified benchmarks and limited uncertainty analysis have hindered progress in the field. To address this, we first develop an open-source library for human pose forecasting, including multiple models, supporting several datasets, and employing standardized evaluation metrics, with the aim of promoting research and moving toward a unified and consistent evaluation. Second, we devise two types of uncertainty in the problem to increase performance and convey better trust: 1) we propose a method for modeling aleatoric uncertainty by using uncertainty priors to inject knowledge about the pattern of uncertainty. This focuses the capacity of the model in the direction of more meaningful supervision while reducing the number of learned parameters and improving stability; 2) we introduce a novel approach for quantifying the epistemic uncertainty of any model through clustering and measuring the entropy of its assignments. Our experiments demonstrate up to 25% improvements in forecasting at short horizons, with no loss on longer horizons on Human3.6 M, AMSS, and 3DPW datasets, and better performance in uncertainty estimation. The code is available online.

IEEE Robotics and Automation Letters

2024

Vol. 9 , num. 5, p. 4447-4454.

DOI : 10.1109/LRA.2024.3374188

Warum Unternehmen radikal umdenken müssen

S. Nick 

Greenwashing ist ein Ärgernis. Wie aber lassen sich die Prinzipien der Nachhaltigkeit in Projekten und Unternehmen wirklich umsetzen? Mit dieser Frage setzt sich EPFL-Dozent und Unternehmer Sascha Nick intensiv auseinander – bald auch an einem Workshop an der Universität Freiburg.

2024-04-08

Anthropological Insights into the Cultural Heritage and Landscape Surrounding Beijing’s Forbidden City

F. Graezer Bideau 

Open Fields Lunch: Landscape Habitats, EPFL, Switzerland, April 9, 2024.

On the influence of flow-front orientation on stringer stiffened composite panels in water impacts

C. Pearson; M. de Mourgues; M. Battley; V. Michaud; J. Little et al. 

Water impacts form the critical load case for high-performance carbon fibre reinforced polymer (CFRP) racing craft. Such events produce a peaked, non-uniform pressure distribution that travels along a hull panel as it is immersed. Current design standards are based on static, uniform pressure loads that do not account for the directional nature of water impacts. With recent trends towards the use of directionally stiffened hull structures in the form of stringer stiffened composite panels (SSCPs), such simplifications of the load case may no longer be valid. In this study, a marine-based SSCP was tested experimentally and numerically to investigate the effects of flow-front orientation on high-performance hull panels. Parallel and perpendicular impacts at constant velocity were carried out using the novel Servo-hydraulic Slam Testing System (SSTS) and the results were used to validate a one-way coupled computational fluid dynamics — finite element analysis (CFD-FEA) Fluent/Abaqus solution. The highest strains in the monolithic skin and stringer were observed for perpendicular impacts. A parameter sweep across a range of impact orientations between parallel and perpendicular impacts was carried out. An approximately linear relationship between flow orientation angle and key structural strains was observed, with the highest strains reported at 70–90°. Results indicate that the critical load case for SSCPs occurs at 75°orientation angles, where strains in the stringer capping are maximum.

Ocean Engineering

2024

Vol. 303 , p. 117797.

DOI : 10.1016/j.oceaneng.2024.117797

A global framework for data-informed bridge examination

N. Bertola; P. Schiltz; E. Brühwiler 

Examining the performance of an existing bridge requires information on several aspects, such as design choices, material properties, and ongoing degradation processes. It often happens that some critical information is not available. The traditional approach in structural engineering is to take the most conservative assumption for each unknown, following new-design principles. It will often be concluded that structural safety is not ensured and that the bridge must be strengthened or replaced. This conclusion has important economic costs, impacts on users, and environmental burden associated. In this paper, a global data-informed framework is proposed to examine structural safety of existing bridges accurately. Multiple state-of-the-art methodologies are unified to provide a comprehensive framework for bridge examination. Observations, which can include visual inspection, non-destructive testing, and structural sensing, enable the development of more realistic models of structural behaviour. A case study of a reinforced-concrete bridge in Switzerland illustrates the potential of the novel framework. Although almost no information was initially available on the bridge, the monitoring results show that it can be rationally concluded that the bridge is safe. This framework supports engineers in examining existing structures when crucial information is missing based on observations and engineering judgment.

Structure and Infrastructure Engineering

2024

p. 1-20.

DOI : 10.1080/15732479.2024.2337088

Opportunities and Challenges for Generative Adversarial Reconstruction by Distribution Matching (CryoGAN)

M. Unser; P. N. Bohra 

2022-03-21

SIAM Conference on Imaging Science (IS’22), Virtual, March 21-25, 2022.

Development of a Flying Wing UAV and Stochastic Component Characterization of the Dahu4NAV R-IMU

E. Chelly 

2022-01-14

Advisor(s): J. Skaloud; P. Longobardi

Boosting Weakly Convex Ridge Regularizers with Spatial Adaptivity

S. J. Neumayer; M. Pourya; A. Goujon; M. Unser 

2023-12-16

Fourth Workshop on Deep Learning and Inverse Problems (NeurIPS’23), New Orleans LA, USA, December 16, 2023.

La realité augmenté au service de l’usinage de charpente

A. Settimi 

Presentation of the research Augmented Carpentry at the inauguration ceremony of the Forum Construction Bois France.

13e Forum International Bois Construction (FBC), Épinal, Nancy, April 3-5, 2024.

Performance gap in the building sector and its impact on investment decisions for heating requirements

L. C. N. Bernath 

Between the ideal and reality lies the decisive world of the performance gap. This project is conducted within the framework of a Master Thesis at the Industrial Processes and Energy Systems Engineering (IPESE) laboratory of Ecole Polytechnique F´ed´erale de Lausanne (EPFL). The objective is to evaluate the energy performance gap, with a static approach, of the building sector and understand its impact on the global energy system in the context of energy transition. The challenge lies in the conservative assumptions regarding the thermal transmission coefficients and construction details of existing buildings in modelling tools. This study is based on two detailed surveys, one on swiss architectural elements and the other on new thermal transmission coefficient ranges. A methodology is designed and integrated to the existing optimization model: Renewable Energy Hub Optimizer (REHO) for different types of buildings, each having particular features. The idea is to integrate to the REHO model a static approach by varying the thermal transmission coefficients and develop a new method concerning the link between the thermal envelope and energy reference area. In result, the impact of the thermal envelope and the form factor of buildings on space heating requirements is researched. The investment and operation uncertainties resulting from the modelling gap are assessed. Finally, the static model developed in this study is compared with a regulatory approach and real on site data from a clustered neighbourhood in Geneva. The results show an improvement of 13,4 % with a change of method.

2024-02-02

Advisor(s): F. Maréchal; C. Terrier

Direct observations of X-rays produced by upward positive lightning

T. Oregel-Chaumont; A. Sunjerga; P. Hettiarachchi; V. Cooray; M. Rubinstein et al. 

X-rays have been observed in natural downward cloud-to-ground lightning for over 20 years and in rocket-triggered lightning for slightly less. In both cases, this energetic radiation has been detected during the stepped and dart leader phases of downward negative flashes. More recently, X-rays have also been reported during the dart leader phase of upward negative flashes. In this study, we present the observations of four upward positive lightning flashes from the Säntis Tower (2.5 km ASL) in Switzerland. These consist of the simultaneous records of electric current passing through the tower, and electric field strength and X-ray flux 20 m from the tower base. One of the flashes was captured by a high-speed camera operating at 24,000 frames per second, stills from which are also presented. We detected X-rays during the initial phase of upward negative leader propagation, which can be associated with the leader-stepping process from electric field and current waveforms. To the best of our knowledge, this is the first time that such measurements are reported in the literature. The obtained time-synchronised data confirm that the X-ray emissions detected are associated with the initial steps of the upward negative leader. The frequency and energy of X-ray pulses appear to decrease as functions of time, with pulses disappearing altogether within the first millisecond of the leader initiation. X-ray emission also appears to be correlated with the maximum current-derivative and the electric field change of leader steps, consistent with cold electron runaway. These observations contribute to improving our understanding of upward lightning, which is a primary source of damage to tall structures such as wind turbines and telecommunications towers, as well as aircraft during takeoff and landing.

Nature Scientific Reports

2024

Vol. 14 , num. 1.

DOI : 10.1038/s41598-024-58520-x

Vibrio cholerae pathogenicity island 2 encodes two distinct types of restriction systems

G. Vizzarro; A. Lemopoulos; D. W. Adams; M. Blokesch 

In response to predation by bacteriophages and invasion by other mobile genetic elements such as plasmids, bacteria have evolved specialised defence systems that are often clustered together on genomic islands. The O1 El Tor strains of Vibrio cholerae responsible for the ongoing seventh cholera pandemic (7PET) contain a characteristic set of genomic islands involved in host colonisation and disease, many of which contain defence systems. Notably, Vibrio pathogenicity island 2 contains several characterised defence systems as well as a putative Type I restriction-modification system (T1RM), which, interestingly, is interrupted by two genes of unknown function. Here, we demonstrate that the T1RM system is active, methylates the host genomes of a representative set of 7PET strains, and identify a specific recognition sequence that targets non-methylated plasmids for restriction. We go on to show that the two genes embedded within the T1RM system encode a novel two-protein modification-dependent restriction system related to the GmrSD family of Type IV restriction enzymes. Indeed, we show that this system has potent anti-phage activity against diverse members of the Tevenvirinae, a subfamily of bacteriophages with hypermodified genomes. Taken together these results expand our understanding of how this highly conserved genomic island contributes to the defence of pandemic V. cholerae against foreign DNA.

bioRxiv

2024

DOI : 10.1101/2024.04.04.588119

DeepMesh: Differentiable Iso-Surface Extraction

B. Guillard; E. Remelli; A. Lukoaianov; P. Yvernay; S. Richter et al. 

IEEE Transactions on Pattern Analysis and Machine Intelligence

2024

Optimizing Dynamic Aperture Studies with Active Learning

D. Di Croce; M. Giovannozzi; E. Krymova; T. Pieloni; S. Redaelli et al. 

Dynamic aperture is an important concept for the study of non-linear beam dynamics in circular accelerators. It describes the extent of the phase-space region where a particle’s motion remains bounded over a given number of turns. Understanding the features of dynamic aperture is crucial for the design and operation of such accelerators, as it provides insights into nonlinear effects and the possibility of optimising beam lifetime. The standard approach to calculate the dynamic aperture requires numerical simulations of several initial conditions densely distributed in phase space for a sufficient number of turns to probe the time scale corresponding to machine operations. This process is very computationally intensive and practically outside the range of today’s computers. In our study, we introduced a novel method to estimate dynamic aperture rapidly and accurately by utilising a Deep Neural Network model. This model was trained with simulated tracking data from the CERN Large Hadron Collider and takes into account variations in accelerator parameters such as betatron tune, chromaticity, and the strength of the Landau octupoles. To enhance its performance, we integrate the model into an innovative Active Learning framework. This framework not only enables retraining and updating of the computed model, but also facilitates efficient data generation through smart sampling. Since chaotic motion cannot be predicted, traditional tracking simulations are incorporated into the Active Learning framework to deal with the chaotic nature of some initial conditions. The results demonstrate that the use of the Active Learning framework allows faster scanning of the configuration parameters without compromising the accuracy of the dynamic aperture estimates.

2024

DOI : 10.48550/arxiv.2402.11077

4 points sensibles/ Vier Angelpunkte

S. Nichols; D. Dietz 

Culture du bâti dans l’existant : inventaire et contexte / Baukultur im Bestand: Inventar und Kontext; Bern: Stiftung Baukultur Schweiz, 2023. p. 77.

ISBN : 978-3-9525727-2-6

A concrete answer for circular construction: three prototypes reusing saw-cut elements

M. Bastien Masse; C. M. Küpfer; C. Fivet 

Existing concrete buildings should be retained for as long as possible to reduce the environmental burden of demolition and new construction. However, when urban pressure makes demolition unavoidable, salvaging and reusing concrete elements elsewhere in new structures, rather than reducing them to rubble, efficiently prolongs the use of existing resources at their highest structural value. Concrete reuse is not a new approach: pioneer cases have demonstrated its potential, but broader adoption has still not been seen across the wider industry. Three prototypes recently built by Ecole Polytechnique Fédérale de Lausanne researchers and students in Switzerland demonstrate the feasibility and potential of reusing elements saw-cut from cast in situ concrete structures. The prototypes deal with different scales of elements, from small blocks to large slab elements and 3D assemblies. Lifecycle assessments confirm that reusing concrete elements drastically reduces the upfront global warming potential of new construction, providing a new lower-bound benchmark for sustainable, circular construction.

The Structural Engineer

2024

Vol. 102 , num. 4, p. 32-37.

DOI : 10.56330/ZMSY4716

Lumped Drag Model Identification and Real-Time External Force Detection for Rotary-Wing Micro Aerial Vehicles

L. C. Wälti; A. Martinoli 

This work focuses on understanding and identifying the drag forces applied to a rotary-wing Micro Aerial Vehicle (MAV). We propose a lumped drag model that concisely describes the aerodynamical forces the MAV is subject to, with a minimal set of parameters. We only rely on commonly available sensor information onboard a MAV, such as accelerometer data, pose estimate, and throttle commands, which makes our method generally applicable. The identification uses an offline gradient-based method on flight data collected over specially designed trajectories. The identified model allows us to predict the aerodynamical forces experienced by the aircraft due to its own motion in real-time and, therefore, will be useful to distinguish them from external perturbations, such as wind or physical contact with the environment. The results show that we are able to identify the drag coefficients of a rotary-wing MAV through onboard flight data and observe the close correlation between the motion of the MAV, the measured external forces, and the predicted drag forces.

2024

2024 IEEE International Conference on Robotics and Automation, Yokohama, May 13-17, 2024.

A Comparative Analysis of Tools & Task Types for Measuring Computational Problem-Solving

E. Bumbacher; J. Brender; R. L. Davis 

How to measure students’ Computational Problem-Solving (CPS) competencies is an ongoing research topic. Prevalent approaches vary by measurement tools (e.g., interactive programming, multiple-choice tests, or programming-independent tests) and task types (e.g., debugging problems or Parson problems). However, few studies have examined the measurement tools of CPS competencies themselves: affordances and limitations of the measurement tools and how they compare, or whether different task types might elicit CPS competencies differently. Research needs to address these questions in order to better understand how to design robust, generalizable, and effective measurement tools for CPS competencies. This paper presents an exploratory study that contributes to this research direction. It is part of a larger international project to develop an open-access formative assessment platform for CPS, which includes a novel authoring tool for a wide range of task types for interactive block-based programming. We used the tool to create an interactive programming experience with multiple task types and gave it to more than 300 secondary school students from different countries. We also administered a validated multiple-choice measurement of Computational Thinking with block-based programs. We focused on task complexity as a characteristic of task type, using a classification scheme based on task design features. Comparing students’ performances on tasks of different complexity and using two distinct measurement tools, we found that the multiple-choice measurement only partially predicts performance in the interactive programming task. Additionally, its predictive capacity varies significantly between task types of differing complexity.

SIGCSE 2024: Proceedings of the 55thACM Technical Symposium on Computer Science Education

2024

ACM Technical Symposium on Computer Science Education (SIGCSE 2024), Portland OR USA, March 20-23, 2024.

p. 1-1567

DOI : 10.1145/3626253.3635547

Energy-Efficient Particle Accelerators for Research

M. Seidel 

Particle accelerators are the drivers for large-scale research infrastructures for particle physics but also for many branches of condensed matter research. The types of accelerator-driven research infrastructures include particle colliders, neutron, muon or neutrino sources, synchrotron light sources and free-electron lasers, as well as medical applications. These facilities are often large and complex and have a significant carbon footprint, both in construction and operation. In all facilities grid power is converted to beam power and ultimately to the desired type of radiation for research. The energy efficiency of this conversion process can be optimized using efficient technologies, but also with optimal concepts for entire facilities.

Oxford Research Encyclopedia of Physics

2024

DOI : 10.1093/acrefore/9780190871994.013.137

Degrees of Separation: A Flexible Type System for Safe Concurrency

Y. Xu; A. S. Boruch-Gruszecki; M. Odersky 

Data races have long been a notorious problem in concurrent programming. They are subtle to detect, and lead to non-deterministic behaviours. There has been a lot of interest in type systems that statically guarantee data race freedom. Significant progress has been made in this area, and these type systems are increasingly usable and practical. However, their adoption in mainstream programming languages is still limited, which is largely attributed to their strict alias prevention principles that obstruct the usage of existing programming patterns. This is a deterrent to the migration of existing code bases. To tackle this problem, we propose Capture Separation Calculus (System CSC), which statically prevents data races while being compatible with established programming patterns. It follows a \emph{control-as-you-need} philosophy: by default, aliases are allowed, but they are tracked in the type system. When data races are a concern, the tracked aliases are controlled to prevent data-race-prone patterns. We study the formal properties of System CSC. Type soundness is proven via the standard progress and preservation theorems. Additionally, we formally verify the data race freedom property of System CSC by proving that the reduction of a well-typed program is confluent.

2024-04-03

OOPSLA 2024, Pasadena, California, United States, 20 – 25 October 2024.

Numerical investigation of two-dimensional Mode-II delamination in composite laminates

C. Wang; A. Vassilopoulos; T. Keller 

Delamination in real composite structures, which generally tends to grow in two-dimensions, sometimes cannot be appropriately represented by the widely accepted test methods where one-dimensional (1D) beam specimens are typically employed. In order to compare and contrast the two-dimensional (2D) and 1D delamination behavior under Mode-II fracture condition, a numerical investigation was carried out in this work based on previous 2D experiments (Fig. 1) and end-loaded split (ELS) experiments. Three-dimensional finite element models (Fig. 2) were established for the simulation of the experiments, and a new cohesive zone model was developed to take into account the effects of a large-scale fracture process zone (FPZ) in the presence of resin plastic deformation, microcracking and fiber (bundle) bridging. The total strain energy release rate (SERR) for Mode-II delamination in 2D plates were found to be similar to that in 1D beams of the same bulk materials, whereas the cohesive relationship was significantly different. Membrane forces that originated in the 2D plates due to large deformation resulted in reduced mean shear tractions over the microcracking zone, which might lead to significant discrepancies in the fracture behavior compared to that in standardized beam specimens.

9th International Conference on Fracture of Polymers, Composites and Adhesives, Les Diablerets, Switzerland, 24-27 March 2024.

“But of course i’m going to look happy” or “He needed to know I was angry”? Comparing use of emotional labour in teamwork in engineering and hospitality students

R. Germanier; A. Darioly; N. Kotluk; R. Tormey 

Being able to work effectively in a team is a vital professional skill but how do students in different disciplines, engineering and hospitality, display their emotions when working together? We investigated their self-reported use of emotional labour strategies, exploring the circumstances (when) and reasons (why) for using or not using them. We also examined the limitations and effects of emotional labour on their well-being. A mixed-method approach was adopted using participants from two Swiss higher education institutions. Stage 1, a quantitative survey, determined that hospitality students used emotional dissonance strategies less than engineering students and that there was no statistically significant difference on the use of deep acting strategies between the two groups. Stage 2 involved using interpretative phenomenological analysis (IPA) on interview data from 14 students equally distributed across the institutions showing that both groups readily displayed their felt emotions in educational teamwork but used surface acting when in leadership roles, or “for the good of the team”. Undertaking surface acting was reported as more difficult when emotionally or physically drained and hospitality students were more reflective of their interactions. There is an indication that women dialled down their shown emotions in situations of sexism and not feeling respected. Deep acting strategies were dismissed by engineers but enacted by hospitality students through empathising with clients and anticipating their needs. Recommendations include teaching deep acting strategies and providing meaningful team projects enabling students, especially in engineering institutions, to learn how to interact effectively and healthily with others.

EAPRIL Conference Proceedings 2023

2024-03-28

EAPRIL 2023 Conference, Belfast, Northern Ireland (UK), November 22 – 24, 2023.

p. 131-143

Beyond Quiescent and Active: Intermediate Microglial Transcriptomic States in a Mouse Model of Down Syndrome

A. Fernandez-Blanco; C. Sierra; C. Tejido; M. Dierssen 

Research on microglia in Down syndrome (DS) has shown that microglial activation, increased inflammatory gene expression, and oxidative stress occur at different ages in DS brains. However, most studies resulted in simplistic definitions of microglia as quiescent or active, ignoring potential intermediate states. Indeed, recent work on microglial cells in young DS brains indicated that those evolve through different intermediate activation phenotypes before reaching a fully activated state. Here we used single nucleus RNA sequencing, to examine how trisomy affects microglial states in the Ts65Dn mouse model of DS. Despite no substantial changes in the proportion of glial populations, differential expression analysis revealed cell type-specific gene expression changes, most notably in astroglia, microglia, and oligodendroglia. Focusing on microglia, we identified differential expression of genes associated with different microglial states, including disease-associated microglia (DAMs), activated response microglia (ARMs), and human Alzheimer’s disease microglia (HAMs), in trisomic microglia. Furthermore, pseudotime analysis reveals a unique reactivity profile in Ts65Dn microglia, with fewer in a homeostatic state and more in an intermediate aberrantly reactive state than in euploid microglia. This comprehensive understanding of microglial transcriptional dynamics sheds light on potential pathogenetic mechanisms but also possible avenues for therapy for neurodevelopmental disorders.

International Journal Of Molecular Sciences

2024-03-01

Vol. 25 , num. 6, p. 3289.

DOI : 10.3390/ijms25063289

Machine Learning for Screening Small Molecules as Passivation Materials for Enhanced Perovskite Solar Cells

X. Zhang; B. Ding; Y. Wang; Y. Liu; G. Zhang et al. 

Utilization of small molecules as passivation materials for perovskite solar cells (PSCs) has gained significant attention recently, with hundreds of small molecules demonstrating passivation effects. In this study, a high-accuracy machine learning model is established to identify the dominant molecular traits influencing passivation and efficiently screen excellent passivation materials among small molecules. To address the challenge of limited available dataset, a novel evaluation method called random-extracted and recoverable cross-validation (RE-RCV) is proposed, which ensures more precise model evaluation with reduced error. Among 31 examined features, dipole moment is identified, hydrogen bond acceptor count, and HOMO-LUMO gap as significant traits affecting passivation, offering valuable guidance for the selection of passivation molecules. The predictions are experimentally validate with three representative molecules: 4-aminobenzenesulfonamide, 4-Chloro-2-hydroxy-5-sulfamoylbenzoic acid, and Phenolsulfonphthalein, which exhibit capability to increase absolute efficiency values by over 2%, with a champion efficiency of 25.41%. This highlights its potential to expedite advancements in PSCs.|A high-accuracy machine learning model is established to efficiently screen effective passivation small molecules, where random-extracted and recoverable cross-validation is introduced to enhance the model evaluation accuracy. This facilitated the identification of dominant molecular traits influencing passivation effects and the screening of excellent passivation materials. The consistency between predictions and experimental results confirmed the reliability of the machine learning model. image

Advanced Functional Materials

2024-03-27

DOI : 10.1002/adfm.202314529

Ion Adsorption Enhances Apparent Nonelectrostatic Attraction between Monomers in Polyelectrolyte Brushes

M. Li; X. Xu; S. Yasar; H-A. Klok; B. Zhuang et al. 

Polyelectrolyte brushes are responsive to salt in the environment, and this has found broad applications in antifouling, biolubrication, and drug delivery. Salt primarily influences the conformation of the polyelectrolytes through ion adsorption. While ion adsorption is typically associated with electrostatic interactions, our research reveals that in multivalent ion solutions, it also enhances nonelectrostatic interactions by bringing distant polyelectrolyte segments closer together. The finding is based on a comparative study between theoretical, simulation, and experimental data for monovalent, divalent, and trivalent cation solutions of sodium poly(styrenesulfonate) (PSS) and potassium poly(3-sulfopropyl methacrylate) (PSPMA) brushes. By incorporating an apparent Flory-Huggins parameter that is linearly dependent on the extent of ion adsorption, we developed a theoretical model for polyelectrolyte brushes that predicts brush heights in good agreement with experimental and simulation data. This work provides three major contributions to our understanding of polyelectrolyte brushes. (a) The theoretical framework reveals that while electrostatic interactions primarily drive the contraction of short-chain brushes (approximately 50 monomers), nonelectrostatic interactions arising from ion adsorption induce the collapse of long-chain brushes (approximately 500 monomers) in multivalent ion solutions. (b) Traditional scaling theory is applied only to long polymer chains in monovalent cation systems. Our modified framework broadens the scope to include both short and long chains in both monovalent and multivalent systems, while most of the traditional scaling theory can only be applied to long-chain systems. (c) We provided a comprehensive quantitative examination of the inter- and intrachain cross-links.

Macromolecules

2024-03-26

DOI : 10.1021/acs.macromol.3c01800

Structural Basis of Ligand Selectivity by a Bacterial Adhesin Lectin Involved in Multispecies Biofilm Formation

S. Guo; T. D. R. Vance; H. Zahiri; R. Eves; C. A. Stevens et al. 

Carbohydrate recognition by lectins governs critical host-microbe interactions. MpPA14 (Marinomonas primoryensis PA14 domain) lectin is a domain of a 1.5-MDa adhesin responsible for a symbiotic bacterium-diatom interaction in Antarctica. Here, we show that MpPA14 binds various monosaccharides, with L-fucose and N-acetylglucosamine being the strongest ligands (dissociation constant [K-d],similar to 150 mu M). High-resolution structures of MpPA14 with 15 different sugars bound elucidated the molecular basis for the lectin’s apparent binding promiscuity but underlying selectivity. MpPA14 mediates strong Ca2+-dependent interactions with the 3,4-diols of L-fucopyranose and glucopyranoses, and it binds other sugars via their specific minor isomers. Thus, MpPA14 only binds polysaccharides like branched glucans and fucoidans with these free end groups. Consistent with our findings, adhesion of MpPA14 to diatom cells was selectively blocked by L-fucose, but not by N-acetyl galactosamine. The MpPA14 lectin homolog present in a Vibrio cholerae adhesin was produced and was shown to have the same sugar binding preferences as MpPA14. The pathogen’s lectin was unable to effectively bind the diatom in the presence of fucose, thus demonstrating the antiadhesion strategy of blocking infection via ligand-based antagonists.|IMPORTANCE Bacterial adhesins are key virulence factors that are essential for the pathogen-host interaction and biofilm formation that cause most infections. Many of the adhesin-driven cell-cell interactions are mediated by lectins. Our study reveals for the first time the molecular basis underlying the binding selectivity of a common bacterial adhesin lectin from the marine bacterium Marinomonas primoryensis, homologs of which are found in both environmental and pathogenic species. The lectinligand interactions illustrated at the atomic level guided the identification of a ligand that serves as an inhibitor to block bacterium-host adhesion. With conventional bactericidal antibiotics losing their potency due to resistance, our work gives critical insight into an antiadhesion strategy to treat bacterial infections.

Mbio

2021-04-01

Vol. 12 , num. 2, p. e00130-21.

DOI : 10.1128/mBio.00130-21

Harboring CAR-T cells using an injectable scaffold to treat solid tumors

L. Tang 

National Science Review

2024-02-28

p. nwae075.

DOI : 10.1093/nsr/nwae075

Dopant-Free Pyrene-Based Hole Transporting Material Enables Efficient and Stable Perovskite Solar Cells

X. Zhang; X. Liu; F. F. Tirani; B. Ding; J. Chen et al. 

Dopant-free hole transporting materials (HTMs) is significant to the stability of perovskite solar cells (PSCs). Here, we developed a novel star-shape arylamine HTM, termed Py-DB, with a pyrene core and carbon-carbon double bonds as the bridge units. Compared to the reference HTM (termed Py-C), the extension of the planar conjugation backbone endows Py-DB with typical intermolecular pi-pi stacking interactions and excellent solubility, resulting in improved hole mobility and film morphology. In addition, the lower HOMO energy level of the Py-DB HTM provides efficient hole extraction with reduced energy loss at the perovskite/HTM interface. Consequently, an impressive power conversion efficiency (PCE) of 24.33 % was achieved for dopant-free Py-DB-based PSCs, which is the highest PCE for dopant-free small molecular HTMs in n-i-p configured PSCs. The dopant-free Py-DB-based device also exhibits improved long-term stability, retaining over 90 % of its initial efficiency after 1000 h exposure to 25 % humidity at 60 degrees C. These findings provide valuable insights and approaches for the further development of dopant-free HTMs for efficient and reliable PSCs.|Py-DB with an extended conjugated structure is an effective dopant-free HTM when applied in n-i-p-type PSCs, affording an efficiency of 24.33 %, the highest PCE for a dopant-free small-molecule HTM. image

Angewandte Chemie-International Edition

2024-03-26

DOI : 10.1002/anie.202320152

A critical perspective for emerging ultra-thin solar cells with ultra-high power-per-weight outputs

A. Panagiotopoulos; T. Maksudov; G. Kakavelakis; G. Perrakis; E. A. Alharbi et al. 

Ultrathin, solution-processed emerging solar cells with high power-per-weight (PPW) outputs demonstrate unique potential for applications where low weight, high power output, and flexibility are indispensable. The following perspective explores the literature of emerging PVs and highlights the maximum reported PPW values of perovskite solar cells (PSCs) 29.4 W/g, organic solar cells (OSCs) 32.07 W/g, and quantum dot solar cells 15.02 W/g, respectively. The record PPW values of OSCs and PSCs are approximately one order of magnitude higher compared to their inorganic ultrathin solar cells counterparts (approximately 3.2 W/g for CIGS and a-Si). This consists emerging PVs, very attractive for a variety of applications where the PPW is the key parameter. In particular, both OSCs and PSCs can be implemented in different scenarios of applications (indoor and biocompatible applications for OSCs and outdoor and high-energy radiation conversion conditions for the PSCs) due to their unique optoelectronic and physiochemical properties. Finally, our theoretical optical and electrical simulation and optimization study for the most promising and well-suited PV technologies showed an impressive maximum realistic theoretical PPW limit of 74.3 and 93.7 W/g for PSCs and OSCs, respectively. Our finding in the theoretical section shows that the experimental results achieved in the literature of PSCs and OSCs toward high PPW outputs is not quite close to the theoretical maximum (35% and 40% of the theoretical maximum for OSCs and PSCs, respectively), and thus, more work needs to be done to further increase the experimental PPWoutput of these promising PV technologies.

Applied Physics Reviews

2023-12-01

Vol. 10 , num. 4, p. 041303.

DOI : 10.1063/5.0169185

High-Work-Function 2D Perovskites as Passivation Agents in Perovskite Solar Cells

E. Shirzadi; F. Ansari; H. Jinno; S. Tian; O. Ouellette et al. 

Various approaches have been employed to passivate the defects in perovskite films used in perovskite solar cells (PSCs). However, the passivation mechanism is often unclear at a molecular level, and the reason for enhanced PSC performance often remains elusive. Here, we explore the impact of passivation with high-work-function two-dimensional (2D) perovskites in promoting the efficiency of PSCs. We realized that 4-halophenylethylammonium lead iodide possesses a high work function, causing band bending at the perovskite surface, thus suppressing charge carrier recombination at the perovskite/hole transporting material (HTM) interface by forming a barricade for electrons to recombine at the trap states. Utilizing this strategy leads to a similar to 100 mV improvement in voltage and a similar to 2.5% increase in power conversion efficiency (PCE).

Acs Energy Letters

2023-08-29

Vol. 8 , num. 9, p. 3955-3961.

DOI : 10.1021/acsenergylett.3c01326

Direct measurement of key exciton properties: Energy, dynamics, and spatial distribution of the wave function

S. Dong; M. Puppin; T. Pincelli; S. Beaulieu; D. Christiansen et al. 

Excitons, Coulomb-bound electron-hole pairs, are the fundamental excitations governing the optoelectronic properties of semiconductors. Although optical signatures of excitons have been studied extensively, experimental access to the excitonic wave function itself has been elusive. Using multidimensional photoemission spectroscopy, we present a momentum-, energy-, and time-resolved perspective on excitons in the layered semiconductor WSe2. By tuning the excitation wavelength, we determine the energy-momentum signature of bright exciton formation and its difference from conventional single-particle excited states. The multidimensional data allow to retrieve fundamental exciton properties like the binding energy and the exciton-lattice coupling and to reconstruct the real-space excitonic distribution function via Fourier transform. All quantities are in excellent agreement with microscopic calculations. Our approach provides a full characterization of the exciton properties and is applicable to bright and dark excitons in semiconducting materials, heterostructures, and devices.|Key points:|center dot The full life cycle of excitons is recorded with time- and angle-resolved photoemission spectroscopy.|center dot The real-space distribution of the excitonic wave function is visualized.|center dot Direct measurement of the exciton-phonon interaction.

Natural Sciences

2021-06-01

Vol. 1 , num. 1, p. e10010.

DOI : 10.1002/ntls.10010

Drosophila SPG12 ortholog, reticulon-like 1, governs presynaptic ER organization and Ca2+ dynamics

J. Jose Perez-Moreno; R. C. Smith; M. K. Oliva; F. Gallo; S. Ojha et al. 

Neuronal endoplasmic reticulum (ER) appears continuous throughout the cell. Its shape and continuity are influenced by ER-shaping proteins, mutations in which can cause distal axon degeneration in Hereditary Spastic Paraplegia (HSP). We therefore asked how loss of Rtnl1, a Drosophila ortholog of the human HSP gene RTN2 (SPG12), which encodes an ER-shaping protein, affects ER organization and the function of presynaptic terminals. Loss of Rtnl1 depleted ER membrane markers at Drosophila presynaptic motor terminals and appeared to deplete narrow tubular ER while leaving cisternae largely unaffected, thus suggesting little change in resting Ca2+ storage capacity. Nevertheless, these changes were accompanied by major reductions in activity-evoked Ca2+ fluxes in the cytosol, ER lumen, and mitochondria, as well as reduced evoked and spontaneous neurotransmission. We found that reduced STIM-mediated ER-plasma membrane contacts underlie presynaptic Ca2+ defects in Rtnl1 mutants. Our results show the importance of ER architecture in presynaptic physiology and function, which are therefore potential factors in the pathology of HSP.

Journal Of Cell Biology

2023-03-23

Vol. 222 , num. 6, p. e202112101.

DOI : 10.1083/jcb.202112101

Cellular nanomotion as a new signature of life

R. G. Willaert; S. Kasas 

Frontiers In Microbiology

2024-03-11

Vol. 15 , p. 1390002.

DOI : 10.3389/fmicb.2024.1390002

Minkowski Distance Based Pilot Protection for Tie Lines Between Offshore Wind Farms and MMC

Z. Yang; R. Zhu; W. Liao 

Offshore wind farms (OWFs) with modular multilevel converter high-voltage dc (MMC-HVdc) have become an important form of renewable energy utilization. However, if a fault occurs at the tie line between the MMC and the OWF, the fault steady-state current at the fault point will be equal to zero when the negative-sequence current is suppressed, so traditional differential protection may fail to operate. To cope with this issue, this article proposes a new pilot protection method based on Minkowski distance. For internal faults, OWF and MMC will have different transient currents, so the Minkowski distance will be much higher than 0, but it will be equal to 0 for external faults and normal operation since the fault currents on both sides are the opposite. Therefore, the internal fault can be detected reliably. The proposed method does not depend on the power frequency phasor extraction, so it is not affected by the frequency offset in the transient process. In addition, this method operates quickly and has a strong ability to withstand fault resistance and environmental noise. Moreover, since there is always a transient process when a fault occurs, the proposed method applies to different fault ride-through strategies. PSCAD simulation and real-time digital simulator experiments show that the proposed method is suitable for different fault locations and types.

Ieee Transactions On Industrial Informatics

2024-03-18

DOI : 10.1109/TII.2024.3369668

Connectome spectrum electromagnetic tomography: A method to reconstruct electrical brain source networks at high-spatial resolution

J. Rue-Queralt; H. Fluhr; S. Tourbier; Y. Aleman-Gomez; D. Pascucci et al. 

Connectome spectrum electromagnetic tomography (CSET) combines diffusion MRI-derived structural connectivity data with well-established graph signal processing tools to solve the M/EEG inverse problem. Using simulated EEG signals from fMRI responses, and two EEG datasets on visual-evoked potentials, we provide evidence supporting that (i) CSET captures realistic neurophysiological patterns with better accuracy than state-of-the-art methods, (ii) CSET can reconstruct brain responses more accurately and with more robustness to intrinsic noise in the EEG signal. These results demonstrate that CSET offers high spatio-temporal accuracy, enabling neuroscientists to extend their research beyond the current limitations of low sampling frequency in functional MRI and the poor spatial resolution of M/EEG.|Connectome spectrum electromagnetic tomography (CSET) presents a method to reconstruct high-spatial resolution brain source-networks, leveraging diffusion MRI and graph signal processing tools. This study evidences CSET’s superior accuracy and robustness against intrinsic EEG noise, promising a revolution in neuroscience research by overcoming the limitations of current functional MRI and M/EEG technologies. image

Human Brain Mapping

2024-04-01

Vol. 45 , num. 5, p. e26638.

DOI : 10.1002/hbm.26638

White adipose tissue distribution and amount are associated with increased white matter connectivity

L. Okudzhava; S. Schulz; E. Fischi-Gomez; G. Girard; J. Machann et al. 

Obesity represents a significant public health concern and is linked to various comorbidities and cognitive impairments. Previous research indicates that elevated body mass index (BMI) is associated with structural changes in white matter (WM). However, a deeper characterization of body composition is required, especially considering the links between abdominal obesity and metabolic dysfunction. This study aims to enhance our understanding of the relationship between obesity and WM connectivity by directly assessing the amount and distribution of fat tissue. Whole-body magnetic resonance imaging (MRI) was employed to evaluate total adipose tissue (TAT), visceral adipose tissue (VAT), and subcutaneous adipose tissue (SAT), while MR liver spectroscopy measured liver fat content in 63 normal-weight, overweight, and obese males. WM connectivity was quantified using microstructure-informed tractography. Connectome-based predictive modeling was used to predict body composition metrics based on WM connectomes. Our analysis revealed a positive dependency between BMI, TAT, SAT, and WM connectivity in brain regions involved in reward processing and appetite regulation, such as the insula, nucleus accumbens, and orbitofrontal cortex. Increased connectivity was also observed in cognitive control and inhibition networks, including the middle frontal gyrus and anterior cingulate cortex. No significant associations were found between WM connectivity and VAT or liver fat. Our findings suggest that altered neural communication between these brain regions may affect cognitive processes, emotional regulation, and reward perception in individuals with obesity, potentially contributing to weight gain. While our study did not identify a link between WM connectivity and VAT or liver fat, further investigation of the role of various fat depots and metabolic factors in brain networks is required to advance obesity prevention and treatment approaches.|Obesity and brain connectivity: Our study reveals increased connectivity in key brain regions involved in appetite, reward, and cognitive control, providing insights into mechanisms driving overeating and weight gain. image

Human Brain Mapping

2024-04-01

Vol. 45 , num. 5, p. e26654.

DOI : 10.1002/hbm.26654

Twenty years of irrigation acclimation is driven by denser canopies and not by plasticity in twig- and needle-level hydraulics in a Pinus sylvestris forest

A. Gauthey; C. Bachofen; A. Chin; H. Cochard; J. Gisler et al. 

Climate change is predicted to increase atmospheric vapor pressure deficit, exacerbating soil drought, and thus enhancing tree evaporative demand and mortality. Yet, few studies have addressed the longer-term drought acclimation strategy of trees, particularly the importance of morphological versus hydraulic plasticity. Using a long-term (20 years) irrigation experiment in a natural forest, we investigated the acclimation of Scots pine (Pinus sylvestris) morpho-anatomical traits (stomatal anatomy and crown density) and hydraulic traits (leaf water potential, vulnerability to cavitation (Psi(50)), specific hydraulic conductivity (K-s), and tree water deficit) to prolonged changes in soil moisture. We found that low water availability reduced twig water potential and increased tree water deficit during the growing season. Still, the trees showed limited adjustments in most branch-level hydraulic traits (Psi(50) and K-s) and needle anatomy. In contrast, trees acclimated to prolonged irrigation by increasing their crown density and hence the canopy water demand. This study demonstrates that despite substantial canopy adjustments, P. sylvestris may be vulnerable to extreme droughts because of limited adjustment potential in its hydraulic system. While sparser canopies reduce water demand, such shifts take decades to occur under chronic water deficits and might not mitigate short-term extreme drought events.

Journal Of Experimental Botany

2024-02-20

DOI : 10.1093/jxb/erae066

Toward Metantennas: Metamaterial-Based Antennas for Wireless Communications

Z. N. Chen; X. Qing; Y. Su; R. Xu 

Antennas have historically been the most common electromagnetic (EM) technology for wireless communication systems. Antenna as hardware is entirely dependent on the EM properties of the materials used, mostly related to the permittivity and permeability. In addition to natural materials, such as good conductors and low-loss dielectrics, metamaterials (MTMs) have been proposed as artificial structures engineered for unique EM properties that are not found in nature. MTMs have enabled new methods of controlling EM fields and wave propagation, resulting in the rapid development of innovative antennas based on MTMs, otherwise known as metantennas. Metantennas have been mostly developed to address critical challenges by increasing antenna gain and bandwidth while decreasing antenna volume and profile. This article presents three common metantenna designs that demonstrate how the metantenna technology addresses the most critical challenges in antenna design, that is, achieving a wide bandwidth and a high gain, as well as a miniaturized size. These designs include a low-profile wideband metantenna for 5G NR small cells using anisotropic high-permittivity MTM; a wideband antipodal antenna loaded with zero-index MTM for gain enhancement; and compact multiple-beam Luneburg lens antennas using transformation optics methods and MTM implementation. The designs demonstrate the advantages of metantennas over traditional antennas for the fifth and sixth generation communications as well as satellite communications.

Ieee Communications Magazine

2023-11-01

Vol. 61 , num. 11, p. 160-165.

DOI : 10.1109/MCOM.001.2300070

Modified capillary number to standardize droplet generation in suction-driven microfluidics

J. Panwar; R. Roy 

In droplet microfluidic devices with suction-based flow control, the microchannel geometry and suction pressure at the outlet govern the dynamic properties of the two phases that influence the droplet generation. Therefore, it is critical to understand the role of geometry along with suction pressure in the dynamics of droplet generation to develop a predictive model. We conducted a comprehensive characterization of droplet generation in a flow focusing device with varying control parameters. We used these results to formulate a scaling argument and propose a governing parameter, called as modified capillary number (CaL), that combines normalized droplet volume with geometrical parameters (length of dispersed and continuous phase channels) and flow parameters (interfacial tension, phase viscosity and velocity) in a power law relationship. CaL effectively captures the transition from squeezing to dripping regimes of droplet generation, providing essential insights into the design requirements for suction-driven droplet generation. These findings are key to standardize microfluidic flow-focusing devices that can achieve the desired droplet generation behavior with optimal pressure consumption.

Microfluidics And Nanofluidics

2024-04-01

Vol. 28 , num. 4, p. 23.

DOI : 10.1007/s10404-024-02714-2

The AGORA High-resolution Galaxy Simulations Comparison Project. V. Satellite Galaxy Populations in a Cosmological Zoom-in Simulation of a Milky Way-Mass Halo

M. Jung; S. Roca-Fabrega; J-h. Kim; A. Genina; L. Hausammann et al. 

We analyze and compare the satellite halo populations at z similar to 2 in the high-resolution cosmological zoom-in simulations of a 1012 M circle dot target halo (z = 0 mass) carried out on eight widely used astrophysical simulation codes (Art-I, Enzo, Ramses, Changa, Gadget-3, Gear, Arepo-t, and Gizmo) for the AGORA High-resolution Galaxy Simulations Comparison Project. We use slightly different redshift epochs near z = 2 for each code (hereafter “z similar to 2”) at which the eight simulations are in the same stage in the target halo’s merger history. After identifying the matched pairs of halos between the CosmoRun simulations and the DMO simulations, we discover that each CosmoRun halo tends to be less massive than its DMO counterpart. When we consider only the halos containing stellar particles at z similar to 2, the number of satellite galaxies is significantly fewer than that of dark matter halos in all participating AGORA simulations and is comparable to the number of present-day satellites near the Milky Way or M31. The so-called “missing satellite problem” is fully resolved across all participating codes simply by implementing the common baryonic physics adopted in AGORA and the stellar feedback prescription commonly used in each code, with sufficient numerical resolution (less than or similar to 100 proper pc at z = 2). We also compare other properties such as the stellar mass-halo mass relation and the mass-metallicity relation. Our work highlights the value of comparison studies such as AGORA, where outstanding problems in galaxy formation theory are studied simultaneously on multiple numerical platforms.

Astrophysical Journal

2024-04-01

Vol. 964 , num. 2, p. 123.

DOI : 10.3847/1538-4357/ad245b

A benchmark dataset for machine learning in ecotoxicology

C. Schuer; L. Gasser; F. Perez-Cruz; K. Schirmer; M. Baity-Jesi 

The use of machine learning for predicting ecotoxicological outcomes is promising, but underutilized. The curation of data with informative features requires both expertise in machine learning as well as a strong biological and ecotoxicological background, which we consider a barrier of entry for this kind of research. Additionally, model performances can only be compared across studies when the same dataset, cleaning, and splittings were used. Therefore, we provide ADORE, an extensive and well-described dataset on acute aquatic toxicity in three relevant taxonomic groups (fish, crustaceans, and algae). The core dataset describes ecotoxicological experiments and is expanded with phylogenetic and species-specific data on the species as well as chemical properties and molecular representations. Apart from challenging other researchers to try and achieve the best model performances across the whole dataset, we propose specific relevant challenges on subsets of the data and include datasets and splittings corresponding to each of these challenge as well as in-depth characterization and discussion of train-test splitting approaches.

Scientific Data

2023-10-18

Vol. 10 , num. 1, p. 718.

DOI : 10.1038/s41597-023-02612-2

A comprehensive mathematical model for cardiac perfusion

A. Zingaro; C. Vergara; L. Dede; F. Regazzoni; A. Quarteroni 

The aim of this paper is to introduce a new mathematical model that simulates myocardial blood perfusion that accounts for multiscale and multiphysics features. Our model incorporates cardiac electrophysiology, active and passive mechanics, hemodynamics, valve modeling, and a multicompartment Darcy model of perfusion. We consider a fully coupled electromechanical model of the left heart that provides input for a fully coupled Navier-Stokes-Darcy model for myocardial perfusion. The fluid dynamics problem is modeled in a left heart geometry that includes large epicardial coronaries, while the multicompartment Darcy model is set in a biventricular myocardium. Using a realistic and detailed cardiac geometry, our simulations demonstrate the biophysical fidelity of our model in describing cardiac perfusion. Specifically, we successfully validate the model reliability by comparing in-silico coronary flow rates and average myocardial blood flow with clinically established values ranges reported in relevant literature. Additionally, we investigate the impact of a regurgitant aortic valve on myocardial perfusion, and our results indicate a reduction in myocardial perfusion due to blood flow taken away by the left ventricle during diastole. To the best of our knowledge, our work represents the first instance where electromechanics, hemodynamics, and perfusion are integrated into a single computational framework.

Scientific Reports

2023-08-30

Vol. 13 , num. 1, p. 14220.

DOI : 10.1038/s41598-023-41312-0

A simplified version of rapid susceptibility testing of bacteria and yeasts using optical nanomotion detection

M. I. Villalba; V. Gligorovski; S. J. Rahi; R. G. Willaert; S. Kasas 

We present a novel optical nanomotion-based rapid antibiotic and antifungal susceptibility test. The technique consisted of studying the effects of antibiotics or antifungals on the nanometric scale displacements of bacteria or yeasts to assess their sensitivity or resistance to drugs. The technique relies on a traditional optical microscope, a video camera, and custom-made image analysis software. It provides reliable results in a time frame of 2-4 h and can be applied to motile, non-motile, fast, and slowly growing microorganisms. Due to its extreme simplicity and low cost, the technique can be easily implemented in laboratories and medical centers in developing countries.

Frontiers In Microbiology

2024-03-07

Vol. 15 , p. 1328923.

DOI : 10.3389/fmicb.2024.1328923

Slowing gait during turning: how volition of modifying walking speed affects the gait pattern in healthy adults

J. Madrid; L. Benning; M. Selig; B. Ulrich; B. M. Jolles et al. 

Background Turning during walking and volitionally modulating walking speed introduces complexity to gait and has been minimally explored.Research question How do the spatiotemporal parameters vary between young adults walking at a normal speed and a slower speed while making 90 degrees, 180 degrees, and 360 degrees turns?Methods In a laboratory setting, the spatiotemporal parameters of 10 young adults were documented as they made turns at 90 degrees, 180 degrees, and 360 degrees. A generalized linear model was utilized to determine the effect of both walking speed and turning amplitude.Results Young adults volitionally reducing their walking speed while turning at different turning amplitudes significantly decreased their cadence and spatial parameters while increasing their temporal parameters. In conditions of slower movement, the variability of certain spatial parameters decreased, while the variability of some temporal parameters increased.Significance This research broadens the understanding of turning biomechanics in relation to volitionally reducing walking speed. Cadence might be a pace gait constant synchronizing the rhythmic integration of several inputs to coordinate an ordered gait pattern output. Volition might up-regulate or down-regulate this pace gait constant (i.e., cadence) which creates the feeling of modulating walking speed.

Frontiers In Human Neuroscience

2024-02-29

Vol. 18 , p. 1269772.

DOI : 10.3389/fnhum.2024.1269772

The autoregressive neural network architecture of the Boltzmann distribution of pairwise interacting spins systems

I. Biazzo 

Autoregressive Neural Networks (ARNNs) have shown exceptional results in generation tasks across image, language, and scientific domains. Despite their success, ARNN architectures often operate as black boxes without a clear connection to underlying physics or statistical models. This research derives an exact mapping of the Boltzmann distribution of binary pairwise interacting systems in autoregressive form. The parameters of the ARNN are directly related to the Hamiltonian’s couplings and external fields, and commonly used structures like residual connections and recurrent architecture emerge from the derivation. This explicit formulation leverages statistical physics techniques to derive ARNNs for specific systems. Using the Curie-Weiss and Sherrington-Kirkpatrick models as examples, the proposed architectures show superior performance in replicating the associated Boltzmann distributions compared to commonly used designs. The findings foster a deeper connection between physical systems and neural network design, paving the way for tailored architectures and providing a physical lens to interpret existing ones.

Communications Physics

2023-10-14

Vol. 6 , num. 1, p. 296.

DOI : 10.1038/s42005-023-01416-5

Bright and dark Talbot pulse trains on a chip

J. Wu; M. Clementi; E. Nitiss; J. Hu; C. Lafforgue et al. 

Temporal Talbot effect, the intriguing phenomenon of the self-imaging of optical pulse trains, is extensively investigated using macroscopic components. However, the ability to manipulate pulse trains, either bright or dark, through the Talbot effect on integrated photonic chips to replace bulky instruments has rarely been reported. Here, we design and experimentally demonstrate a proof-of-principle integrated silicon nitride device capable of imprinting the Talbot phase relation onto in-phase optical combs and generating the two-fold self-images at the output. We show that the GHz-repetition-rate bright and dark pulse trains can be doubled without affecting their spectra as a key feature of the temporal Talbot effect. The designed chip can be electrically tuned to switch between pass-through and repetition-rate-multiplication outputs and is compatible with other related frequencies. The results of this work lay the foundations for the large-scale system-on-chip photonic integration of Talbot-based pulse multipliers, enabling the on-chip flexible up-scaling of pulse trains’ repetition rate without altering their amplitude spectra.

Communications Physics

2023-09-13

Vol. 6 , num. 1, p. 249.

DOI : 10.1038/s42005-023-01375-x

Technology challenges and integration of the plasma position reflectometer in RFX-mod2

G. De Masi; R. Cavazzana; F. Ruffini; G. Marchiori; M. Moresco et al. 

The integration of the new plasma position reflectometer in the RFX-mod2 experiment (the upgraded version of the previous RFX-mod that operated until 2015) is presented in this contribution. Particular attention has been devoted to the high field side subsystem where an antenna pair will be installed in the inner midplane. Waveguides, insulated through the application of a ZrO painting, will be routed in between the vacuum vessel and the conductive shell to a vertical port. The severe constraints in terms of physical space available guided the antennas design: a hoghorn antenna model was first numerically modeled and, due to the complex geometry, produced through metal additive manufacturing; then, a post -production surface treatment allowed achieving a surface with characteristic roughness and conductivity comparable to traditional manufactured antennas. Different bench tests are presented to assess the system performance.

Fusion Engineering And Design

2024-02-20

Vol. 201 , p. 114257.

DOI : 10.1016/j.fusengdes.2024.114257

Mott physics in the multiflavored age

F. Mila 

The multiflavor Mott insulators, whose local Hilbert space consists of multiple degrees of freedom, occur widely in both quantum materials and ultracold atom systems. This Comment recommends the review article by Chen and Wu that is, to the author’s knowledge, the first one to deal with all aspects and physical realizations of the multiflavor Mott insulators.

Npj Quantum Materials

2024-03-20

Vol. 9 , num. 1, p. 30.

DOI : 10.1038/s41535-024-00639-1

Fluid-structure interactions of bristled wings: the trade-off between weight and drag

Y. L. Lin; M. Pezzulla; P. M. Reis 

The smallest flying insects often have bristled wings resembling feathers or combs. We combined experiments and three-dimensional numerical simulations to investigate the trade-off between wing weight and drag generation. In experiments of bristled strips, a reduced physical model of the bristled wing, we found that the elasto-viscous number indicates when reconfiguration occurs in the bristles. Analysis of existing biological data suggested that bristled wings of miniature insects lie below the reconfiguration threshold, thus avoiding drag reduction. Numerical simulations of bristled strips showed that there exist optimal numbers of bristles that maximize the weighted drag when the additional volume due to the bristles is taken into account. We found a scaling relationship between the rescaled optimal numbers and the dimensionless bristle length. This result agrees qualitatively with and provides an upper bound for the bristled wing morphological data analysed in this study.

Journal Of The Royal Society Interface

2023-09-13

Vol. 20 , num. 206, p. 20230266.

DOI : 10.1098/rsif.2023.0266

Nanofluidic logic with mechano-ionic memristive switches

T. Emmerich; Y. Teng; N. Ronceray; E. Lopriore; R. Chiesa et al. 

Neuromorphic systems are typically based on nanoscale electronic devices, but nature relies on ions for energy-efficient information processing. Nanofluidic memristive devices could thus potentially be used to construct electrolytic computers that mimic the brain down to its basic principles of operation. Here we report a nanofluidic device that is designed for circuit-scale in-memory processing. The device, which is fabricated using a scalable process, combines single-digit nanometric confinement and large entrance asymmetry and operates on the second timescale with a conductance ratio in the range of 9 to 60. In operando optical microscopy shows that the memory capabilities are due to the reversible formation of liquid blisters that modulate the conductance of the device. We use these mechano-ionic memristive switches to assemble logic circuits composed of two interactive devices and an ohmic resistor.

Nature Electronics

2024-03-19

DOI : 10.1038/s41928-024-01137-9

Thermal transport of glasses via machine learning driven simulations

P. Pegolo; F. Grasselli 

Accessing the thermal transport properties of glasses is a major issue for the design of production strategies of glass industry, as well as for the plethora of applications and devices where glasses are employed. From the computational standpoint, the chemical and morphological complexity of glasses calls for atomistic simulations where the interatomic potentials are able to capture the variety of local environments, composition, and (dis)order that typically characterize glassy phases. Machine-learning potentials (MLPs) are emerging as a valid alternative to computationally expensive ab initio simulations, inevitably run on very small samples which cannot account for disorder at different scales, as well as to empirical force fields, fast but often reliable only in a narrow portion of the thermodynamic and composition phase diagrams. In this article, we make the point on the use of MLPs to compute the thermal conductivity of glasses, through a review of recent theoretical and computational tools and a series of numerical applications on vitreous silica and vitreous silicon, both pure and intercalated with lithium.

Frontiers In Materials

2024-03-06

Vol. 11 , p. 1369034.

DOI : 10.3389/fmats.2024.1369034

Synergistic Redox Modulation for High-Performance Nickel Oxide-Based Inverted Perovskite Solar Modules

Y. Liu; B. Ding; G. Zhang; X. Ma; Y. Wang et al. 

Nickel oxide (NiOx)-based inverted perovskite solar cells stand as promising candidates for advancing perovskite photovoltaics towards commercialization, leveraging their remarkable stability, scalability, and cost-effectiveness. However, the interfacial redox reaction between high-valence Ni4+ and perovskite, alongside the facile conversion of iodide in perovskite into I2, significantly deteriorates the performance and reproducibility of NiOx-based perovskite photovoltaics. Here, potassium borohydride (KBH4) is introduced as a dual-action reductant, which effectively avoids the Ni4+/perovskite interface reaction and mitigates the iodide-to-I2 oxidation within perovskite film. This synergistic redox modulation significantly suppresses nonradiative recombination and increases the carrier lifetime. As a result, an impressive power conversion efficiency of 24.17% for NiOx-based perovskite solar cells is achieved, and a record efficiency of 20.2% for NiOx-based perovskite solar modules fabricated under ambient conditions. Notably, when evaluated using the ISOS-L-2 standard protocol, the module retains 94% of its initial efficiency after 2000 h of continuous illumination under maximum power point at 65 degrees C in ambient air.|The dual-action reductant KBH4 is employed to suppress the harmful reaction between NiOx and perovskite while simultaneously avoiding iodide oxidation in perovskite. High-quality perovskite film with low-defect density on NiOx@KBH4 is achieved during the deposition in ambient conditions. This significantly improves the power conversion efficiency and stability of perovskite solar modules. image

Advanced Science

2024-03-19

DOI : 10.1002/advs.202309111

Optical Monitoring of Water Side Permeation in Thin Film Encapsulation

K. Wu; M. Mariello; Y. Leterrier; S. P. Lacour 

The stability of long-term microfabricated implants is hindered by the presence of multiple water diffusion paths within artificially patterned thin-film encapsulations. Side permeation, defined as infiltration of molecules through the lateral surface of the thin structure, becomes increasingly critical with the trend of developing high-density and miniaturized neural electrodes. However, current permeability measurement methods do not account for side permeation accurately nor quantitatively. Here, a novel optical, magnesium (Mg)-based method is proposed to quantify the side water transmission rate (SWTR) through thin film encapsulation and validate the approach using micrometric polyimide (PI) and polyimide-silicon carbide (PI-SiC) multilayers. Through computed digital grayscale images collected with corroding Mg film microcells coated with the thin encapsulation, side and surface WTRs are quantified. A 4.5-fold ratio between side and surface permeation is observed, highlighting the crucial role of the PI-PI interface in lateral diffusion. Universal guidelines for the design of flexible, hermetic neural interfaces are proposed. Increasing encapsulation’s width (interelectrode spacing), creating stronger interfacial interactions, and integrating high-barrier interlayers such as SiC significantly enhance the lateral hermeticity.|This study introduces a magnesium-based optical technique to quantify water permeation in thin film encapsulation, which becomes crucial as devices miniaturize. It highlights that design rules, robust interfacial interactions, and the use of high-barrier materials like silicon carbide significantly enhance the encapsulation’s barrier effectiveness. This offers a novel approach to improving the durability of thin film coatings. image

Advanced Materials

2024-03-19

DOI : 10.1002/adma.202310201

Energy-dependent periodicities of LS I+61°303 in the GeV band

M. Chernyakova; D. Malyshev; A. Neronov; D. Savchenko 

LS I +61 degrees 303 is a rare representative of the gamma-ray binaries with a compact object known to be a pulsar. We report on the periodicity and spectral analysis of this source performed with more than 14 yr of Fermi/LAT data. The periodicity of LS I +61 degrees 303 is strongly energy dependent. Two periods P-1 = 26.932 +/- 0.004(stat) +/- 0.008(syst) and P-2 = 26.485 +/- 0.004(stat) +/- 0.007(syst) are detected only at E > 1 GeV and at E < 0.3 GeV correspondingly. Within 1 sigma (stat + syst) the periods are consistent with orbital (P-2) and beat orbital/superorbital (P-1) periods. We present the orbital light curves of the system in several energy bands and the results of the spectral analysis. We discuss the possible origin of the change in the variability pattern between 0.1 and 1 GeV energy.

Monthly Notices Of The Royal Astronomical Society

2023-10-01

Vol. 525 , num. 2, p. 2202-2207.

DOI : 10.1093/mnras/stad2380

Cosmological constraints with the linear point from the BOSS survey

M. He; C. Zhao; H. Shan 

The Linear Point (LP), defined as the mid-point between the baryon acoustic oscillation (BAO) peak and the associated left dip of the two-point correlation function (2PCF), xi(s), is proposed as a new standard ruler which is insensitive to non-linear effects. In this paper, we use a Bayesian sampler to measure the LP and estimate the corresponding statistical uncertainty, and then perform cosmological parameter constraints with LP measurements. Using the Patchy mock catalogues, we find that the measured LPs are consistent with theoretical predictions at 0.6 per cent level. We find constraints with mid-points identified from the rescaled 2PCF (s(2)xi) more robust than those from the traditional LP based on., as the BAO peak is not always prominent when scanning the cosmological parameter space, with the cost of 2-4 per cent increase of statistical uncertainty. This problem can also be solved by an additional data set that provides strong parameter constraints. Measuring LP from the reconstructed data slightly increases the systematic error but significantly reduces the statistical error, resulting in more accurate measurements. The 1 sconfidence interval of distance scale constraints from LP measurements are 20-30 per cent larger than those of the corresponding BAO measurements. For the reconstructed Sloan Digital Sky Survey Data Release 12 data, the constraints on H-0 and Omega(m) in a flat-Lambda cold dark matter framework with the LP are generally consistent with those from BAO. When combined with Planck cosmic microwave background data, we obtain H-0 = 68.02(-0.37)(+0.36) km s(-1) Mpc(-1) and Omega(m) = 0.3055(+-0.0048)(-0.0049) with the LP.

Monthly Notices Of The Royal Astronomical Society

2023-10-01

Vol. 525 , num. 2, p. 1746-1757.

DOI : 10.1093/mnras/stad2207

Vapor compression and energy dissipation in a collapsing laser-induced bubble

D. B. Preso; D. Fuster; A. B. Sieber; D. Obreschkow; M. FARHAT 

The composition of the gaseous phase of cavitation bubbles and its role on the collapse remains to date poorly understood. In this work, experiments of single cavitation bubbles in aqueous ammonia serve as a novel approach to investigate the effect of the vapor contained in a bubble on its collapse. We find that the higher vapor pressure of more concentrated aqueous ammonia acts as a resistance to the collapse, reducing the total energy dissipation. In line with visual observation, acoustic measurements, and luminescence recordings, it is also observed that higher vapor pressures contribute to a more spherical collapse, likely hindering the growth of interface instabilities by decreasing the collapse velocities and accelerations. Remarkably, we evidence a strong difference between the effective damping and the energy of the shock emission, suggesting that the latter is not the dominant dissipation mechanism at collapse as predicted from classical correction models accounting for slightly compressible liquids. Furthermore, our results suggest that the vapor inside collapsing bubbles gets compressed, consistently with previous studies performed in the context of single bubble sonoluminescence, addressing the question about the ability of vapors to readily condense during a bubble collapse in similar regimes. These findings provide insight into the identification of the influence of the bubble content and the energy exchanges of the bubble with its surrounding media, eventually paving the way to a more efficient use of cavitation in engineering and biomedical applications.

Physics Of Fluids

2024-03-01

Vol. 36 , num. 3, p. 033342.

DOI : 10.1063/5.0200361

Frequent asymmetric migrations suppress natural selection in spatially structured populations

A. Abbara; A-F. Bitbol 

Natural microbial populations often have complex spatial structures. This can impact their evolution, in particular the ability of mutants to take over. While mutant fixation probabilities are known to be unaffected by sufficiently symmetric structures, evolutionary graph theory has shown that some graphs can amplify or suppress natural selection, in a way that depends on microscopic update rules. We propose a model of spatially structured populations on graphs directly inspired by batch culture experiments, alternating within-deme growth on nodes and migration-dilution steps, and yielding successive bottlenecks. This setting bridges models from evolutionary graph theory with Wright-Fisher models. Using a branching process approach, we show that spatial structure with frequent migrations can only yield suppression of natural selection. More precisely, in this regime, circulation graphs, where the total incoming migration flow equals the total outgoing one in each deme, do not impact fixation probability, while all other graphs strictly suppress selection. Suppression becomes stronger as the asymmetry between incoming and outgoing migrations grows. Amplification of natural selection can nevertheless exist in a restricted regime of rare migrations and very small fitness advantages, where we recover the predictions of evolutionary graph theory for the star graph.

Pnas Nexus

2023-11-01

Vol. 2 , num. 11, p. pgad392.

DOI : 10.1093/pnasnexus/pgad392

Disorder and Halide Distributions in Cesium Lead Halide Nanocrystals as Seen by Colloidal 133Cs Nuclear Magnetic Resonance Spectroscopy

M. Aebli; C. J. Kaul; N. Yazdani; F. Krieg; C. Bernasconi et al. 

Colloidal nuclear magnetic resonance (cNMR) spectroscopy on inorganic cesium lead halide nanocrystals (CsPbX3 NCs) is found to serve for noninvasive characterization and quantification of disorder within these structurally soft and labile particles. In particular, we show that Cs-133 cNMR is highly responsive to size variations from 3 to 11 nm or to altering the capping ligands on the surfaces of CsPbX3 NCs. Distinct Cs-133 signals are attributed to the surface and core NC regions. Increased heterogeneous broadening of Cs-133 signals, observed for smaller NCs as well as for long-chain zwitterionic capping ligands (phosphocholines, phosphoethanol(propanol)amine, and sulfobetaines), can be attributed to more significant surface disorder and multifaceted surfaces (truncated cubes). On the contrary, capping with dimethyl-didodecyl-ammonium bromide (DDAB) successfully reduces signal broadening owing to better surface passivation and sharper (001)-bound cuboid shape. DFT calculations on various sizes of NCs corroborate the notion that the surface disorder propagates over several octahedral layers. Cs-133 NMR is a sensitive probe for studying halide gradients in mixed Br/Cl NCs, indicating bromide-rich surfaces and chloride-rich cores. On the contrary, mixed Br/I NCs exhibit homogeneous halide distributions.

Chemistry Of Materials

2024-03-15

Vol. 36 , num. 6, p. 2767-2775.

DOI : 10.1021/acs.chemmater.3c02901

Ion Spectroscopy Reveals Structural Difference for Proteins Microhydrated by Retention and Condensation of Water

A. Zviagin; O. V. Boyarkin 

Protein ubiquitin in its +7 charge state microhydrated by 5 and 10 water molecules has been interrogated in the gas phase by cold ion UV/IR spectroscopy. The complexes were formed either by condensing water onto the unfolded bare proteins in a temperature-controlled ion trap or by incomplete dehydration of the folded proteins. In the case of cryogenic condensation, the UV spectra of the complexes exhibit a resolved vibrational structure, which looks similar to the spectrum of bare unfolded ubiquitin. The spectra become, however, broad-band with no structure when complexes of the same size are produced by incomplete dehydration under soft conditions of electrospray ionization. We attribute this spectroscopic dissimilarity to the structural difference of the protein: condensing a few water molecules cannot refold the gas-phase structure of the bare ubiquitin, while the retained water preserves its solution-like folded motif through evaporative cooling. This assessment is firmly confirmed by IR spectroscopy, which reveals the presence of free NH and carboxylic OH stretching vibrations only in the complexes with condensed water.

Journal Of Physical Chemistry A

2024-03-15

Vol. 128 , num. 12, p. 2317-2322.

DOI : 10.1021/acs.jpca.4c00263

Acetyl-CoA carboxylase 1 controls a lipid droplet-peroxisome axis and is a vulnerability of endocrine-resistant ER+ breast cancer

M. Bacci; N. Lorito; A. Smiriglia; A. Subbiani; F. Bonechi et al. 

Targeting aromatase deprives ER(+ )breast cancers of estrogens and is an effective therapeutic approach for these tumors. However, drug resistance is an unmet clinical need. Lipidomic analysis of long-term estrogen-deprived (LTED) ER+ breast cancer cells, a model of aromatase inhibitor resistance, revealed enhanced intracellular lipid storage. Functional metabolic analysis showed that lipid droplets together with peroxisomes, which we showed to be enriched and active in the LTED cells, controlled redox homeostasis and conferred metabolic adaptability to the resistant tumors. This reprogramming was controlled by acetyl-CoA-carboxylase-1 (ACC1), whose targeting selectively impaired LTED survival. However, the addition of branched- and very long-chain fatty acids reverted ACC1 inhibition, a process that was mediated by peroxisome function and redox homeostasis. The therapeutic relevance of these findings was validated in aromatase inhibitor-treated patient-derived samples. Last, targeting ACC1 reduced tumor growth of resistant patient-derived xenografts, thus identifying a targetable hub to combat the acquisition of estrogen independence in ER+ breast cancers.

Science Translational Medicine

2024-02-28

Vol. 16 , num. 736, p. eadf9874.

DOI : 10.1126/scitranslmed.adf9874

Forward-forward training of an optical neural network

I. Oguz; J. Ke; Q. Weng; F. Yang; M. Yildirim et al. 

Neural networks (NNs) have demonstrated remarkable capabilities in various tasks, but their computation-intensive nature demands faster and more energy-efficient hardware implementations. Optics-based platforms, using technologies such as silicon photonics and spatial light modulators, offer promising avenues for achieving this goal. However, training multiple programmable layers together with these physical systems poses challenges, as they are difficult to fully characterize and describe with differentiable functions, hindering the use of error backpropagation algorithm. The recently introduced forward-forward algorithm (FFA) eliminates the need for perfect characterization of the physical learning system and shows promise for efficient training with large numbers of programmable parameters. The FFA does not require backpropagating an error signal to update the weights, rather the weights are updated by only sending information in one direction. The local loss function for each set of trainable weights enables low-power analog hardware implementations without resorting to metaheuristic algorithms or reinforcement learning. In this paper, we present an experiment utilizing multimode nonlinear wave propagation in an optical fiber demonstrating the feasibility of the FFA approach using an optical system. The results show that incorporating optical transforms in multilayer NN architectures trained with the FFA can lead to performance improvements, even with a relatively small number of trainable weights. The proposed method offers a new path to the challenge of training optical NNs and provides insights into leveraging physical transformations for enhancing the NN performance.

Optics Letters

2023-10-15

Vol. 48 , num. 20, p. 5249-5252.

DOI : 10.1364/OL.496884

A 0.14-nJ/b 200-Mb/s 2.7-3.5-GHz Quasi-Balanced FSK Transceiver With PLL-Based Modulation and Sideband Energy Detection

B. Wang; C. Ding; Y. Nie; W. Rhee; Z. Wang 

This paper describes a balanced frequency shift keying (FSK) modulation, namely quasi-balanced FSK (QB-FSK), for energy-efficient high-data-rate communication. Not suffering from data-pattern dependency, the proposed modulation method enables frequency modulation (FM) over 100 Mb/s by utilizing a wideband phase-locked loop (PLL). The QB-FSK signal is generated with the same baseband clock frequency as the non-return zero (NRZ)-coded binary FSK (BFSK) signal, resulting in improved bandwidth efficiency compared to other balanced FSK signals. For demodulation, the receiver employs a sideband energy detection (SB-ED) method. A FM discriminator converts the QB-FSK signal to an on-off keying (OOK) signal. After that, a band-pass filter (BPF) is used to filter out 1/f noise and dc offset. Based on the proposed QB-FSK modulation and the SB-ED method, a prototype FSK transceiver is implemented in 65-nm CMOS for high-data-rate sub-6-GHz proprietary wireless connectivity. The receiver successfully demodulates data at a rate of 200 Mb/s with a sensitivity of -67 dBm, while the transmitter can achieve a maximum data rate of 400 Mb/s. The 200-Mb/s transceiver achieves an energy efficiency of 0.14 nJ/b.

Ieee Transactions On Circuits And Systems I-Regular Papers

2024-03-07

DOI : 10.1109/TCSI.2024.3365862

Lateral medullary vascular compression manifesting as paroxysmal hypertension

L. Giammattei; G. Wuerzner; K. Theiler; P. Vollenweider; V. Dunet et al. 

Neurovascular compression of the rostral ventrolateral medulla (RVLM) has been described as a possible cause of refractory essential hypertension. We present the case of a patient affected by episodes of severe paroxysmal hypertension, some episodes associated with vago-glossopharyngeal neuralgia. Classical secondary forms of hypertension were excluded. Imaging revealed a neurovascular conflict between the posterior inferior cerebellar artery (PICA) and the ventrolateral medulla at the level of the root entry zone of the ninth and tenth cranial nerves (CN IX-X REZ). A MVD of a conflict between the PICA and the RVLM and adjacent CN IX-X REZ was performed, resulting in reduction of the frequency and severity of the episodes. Brain MRI should be performed in cases of paroxysmal hypertension. MVD can be considered in selected patients.

Acta Neurochirurgica

2024-03-15

Vol. 166 , num. 1, p. 139.

DOI : 10.1007/s00701-024-06032-y

Mapping orthorhombic domains with geometrical phase analysis in rare-earth nickelate heterostructures

B. Mundet; M. Hadjimichael; J. Fowlie; L. Korosec; L. Varbaro et al. 

Most perovskite oxides belong to the Pbnm space group, composed of an anisotropic unit cell, A-site antipolar displacements, and oxygen octahedral tilts. Mapping the orientation of the orthorhombic unit cell in epitaxial heterostructures that consist of at least one Pbnm compound is often needed for understanding and controlling the different degrees of coupling established at their coherent interfaces and, therefore, their resulting physical properties. However, retrieving this information from the strain maps generated with high-resolution scanning transmission electron microscopy can be challenging, because the three pseudocubic lattice parameters are very similar in these systems. Here, we present a novel methodology for mapping the crystallographic orientation in Pbnm systems. It makes use of the geometrical phase analysis algorithm, as applied to aberration-corrected scanning transition electron microscopy images, but in an unconventional way. The method is fast and robust, giving real-space maps of the lattice orientations in Pbnm systems, from both cross section and plan-view geometries, and across large fields of view. As an example, we apply our methodology to rare-earth nickelate heterostructures, in order to investigate how the crystallographic orientation of these films depends on various structural constraints that are imposed by the underlying single crystal substrates. We observe that the resulting domain distributions and associated defect landscapes mainly depend on a competition between the epitaxial compressive/tensile and shear strains, together with the matching of atomic displacements at the substrate/film interface. The results point toward strategies for controlling these characteristics by appropriate substrate choice.

Apl Materials

2024-03-01

Vol. 12 , num. 3, p. 031124.

DOI : 10.1063/5.0180998

Photothermal spectroscopy on-chip sensor for the measurement of a PMMA film using a silicon nitride micro-ring resonator and an external cavity quantum cascade laser

G. Ricchiuti; A. Walsh; J. H. Mendoza-Castro; A. S. Vorobev; M. Kotlyar et al. 

Laser-based mid-infrared (mid-IR) photothermal spectroscopy (PTS) represents a selective, fast, and sensitive analytical technique. Recent developments in laser design permits the coverage of wider spectral regions in combination with higher power, enabling for qualitative reconstruction of broadband absorption features, typical of liquid or solid samples. In this work, we use an external cavity quantum cascade laser (EC-QCL) that emits in pulsed mode in the region between 5.7 and 6.4 mu m (1770-1560 cm-1), to measure the absorption spectrum of a thin film of polymethyl methacrylate (PMMA) spin-coated on top of a silicon nitride (Si3N4) micro-ring resonator (MRR). Being the PTS signal inversely proportional to the volume of interaction, in the classical probe-pump dual beam detection scheme, we exploit a Si3N4 transducer coated with PMMA, as a proof-of-principle for an on-chip photothermal sensor. By tuning the probe laser at the inflection point of one resonance, aiming for highest sensitivity, we align the mid-IR beam on top of the ring’s area, in a transversal configuration. To maximize the amplitude of the photoinduced thermal change, we focus the mid-IR light on top of the ring using a Cassegrain reflector enabling for an optimal match between ring size and beam waist of the excitation source. We briefly describe the transducer design and fabrication process, present the experimental setup, and perform an analysis for optimal operational parameters. We comment on the obtained results showing that PTS allows for miniaturized robust sensors opening the path for on-line/in-line monitoring in several industrial processes.

Nanophotonics

2024-03-15

DOI : 10.1515/nanoph-2024-0033

Measurement of the CKM angle γ in the B0→DK *0 channel using self-conjugate D→ KS0h+ h- decays

R. Aaij; A. S. W. Abdelmotteleb; C. A. Beteta; F. Abudinen; T. Ackernley et al. 

A model-independent study of CP violation in B-0 -> DK (*0) decays is presented using data corresponding to an integrated luminosity of 9 fb(-1) collected by the LHCb experiment at centre-of-mass energies of v s = 7, 8 and 13TeV. The CKM angle. is determined by examining the distributions of signal decays in phase-space bins of the self-conjugate D. K(S)(0)h(+) h(-) decays, where h = p, K. Observables related to CP violation are measured and the angle. is determined to be. = (49+22 -19).. Measurements of the amplitude ratio and strong-phase difference between the favoured and suppressed B-0 decays are also presented.

European Physical Journal C

2024-02-29

Vol. 84 , num. 2.

DOI : 10.1140/epjc/s10052-023-12376-z

Multi-machine benchmark of the self-consistent 1D scrape-off layer model DIV1D from stagnation point to target with SOLPS-ITER

G. L. Derks; E. Westerhof; M. van Berkel; J. H. Jenneskens; J. T. W. Koenders et al. 

This paper extends a 1D dynamic physics-based model of the scrape-off layer (SOL) plasma, DIV1D, to include the core SOL and possibly a second target. The extended model is benchmarked on 1D mapped SOLPS-ITER simulations to find input settings for DIV1D that allow it to describe SOL plasmas from upstream to target-calibrating it on a scenario and device basis. The benchmark shows a quantitative match between DIV1D and 1D mapped SOLPS-ITER profiles for the heat flux, electron temperature, and electron density within roughly 50% on: (1) the Tokamak Configuration Variable (TCV) for a gas puff scan; (2) a single SOLPS-ITER simulation of the Upgraded Mega Ampere Spherical Tokamak; and (3) the Upgraded Axially Symmetric Divertor EXperiment in Garching Tokamak (AUG) for a simultaneous scan in heating power and gas puff. Once calibrated, DIV1D self-consistently describes dependencies of the SOL solution on core fluxes and external neutral gas densities for a density scan on TCV whereas a varying SOL width is used in DIV1D for AUG to match a simultaneous change in power and density. The ability to calibrate DIV1D on a scenario and device basis is enabled by accounting for cross field transport with an effective flux expansion factor and by allowing neutrals to be exchanged between SOL and adjacent domains.

Plasma Physics And Controlled Fusion

2024-05-01

Vol. 66 , num. 5, p. 055004.

DOI : 10.1088/1361-6587/ad2e37

Collective motion in a sheet of microswimmers

D. Bardfalvy; V. Skultety; C. Nardini; A. Morozov; J. Stenhammar 

Self-propelled particles such as bacteria or algae swimming through a fluid are non-equilibrium systems where particle motility breaks microscopic detailed balance, often resulting in large-scale collective motion. Previous theoretical work has identified long-ranged hydrodynamic interactions as the driver of collective motion in unbounded suspensions of rear-actuated (“pusher”) microswimmers. In contrast, most experimental studies of collective motion in microswimmer suspensions have been carried out in restricted geometries where both the swimmers’ motion and their long-range flow fields become altered due to the proximity of a boundary. Here, we study numerically a minimal model of microswimmers in such a restricted geometry, where the particles move in the midplane between two no-slip walls. For pushers, we demonstrate collective motion with short-ranged order, in contrast with the long-ranged flows observed in unbounded systems. For front-actuated (“puller”) microswimmers, we discover a long-wavelength density instability resulting in the formation of dense microswimmer clusters. Both types of collective motion are fundamentally different from their previously studied counterparts in unbounded domains. Our results show that this difference is dictated by the geometrical restriction of the swimmers’ motion, while hydrodynamic screening due to the presence of a wall is subdominant in determining the suspension’s collective state.|Understanding the mechanisms that shape collective swimming of microorganisms is of great interest in biology, ecology and physics. Here the authors show that geometric constraints on the swimmers’ dynamics, such as near a solid surface, significantly alter emergent collective patterns, with relevance to many experimental and biological microswimmer realisations.

Communications Physics

2024-03-14

Vol. 7 , num. 1, p. 93.

DOI : 10.1038/s42005-024-01587-9

An atlas of protein homo-oligomerization across domains of life

H. Schweke; M. Pacesa; T. Levin; C. A. Goverde; P. Kumar et al. 

Protein structures are essential to understanding cellular processes in molecular detail. While advances in artificial intelligence revealed the tertiary structure of proteins at scale, their quaternary structure remains mostly unknown. We devise a scalable strategy based on AlphaFold2 to predict homo-oligomeric assemblies across four proteomes spanning the tree of life. Our results suggest that approximately 45% of an archaeal proteome and a bacterial proteome and 20% of two eukaryotic proteomes form homomers. Our predictions accurately capture protein homo-oligomerization, recapitulate megadalton complexes, and unveil hundreds of homo-oligomer types, including three confirmed experimentally by structure determination. Integrating these datasets with omics information suggests that a majority of known protein complexes are symmetric. Finally, these datasets provide a structural context for interpreting disease mutations and reveal coiled -coil regions as major enablers of quaternary structure evolution in human. Our strategy is applicable to any organism and provides a comprehensive view of homo-oligomerization in proteomes.

Cell

2024-02-15

Vol. 187 , num. 4.

DOI : 10.1016/j.cell.2024.01.022

Decentralized gradient tracking with local steps

Y. Liu; T. Lin; A. Koloskova; S. U. Stich 

Gradient tracking (GT) is an algorithm designed for solving decentralized optimization problems over a network (such as training a machine learning model). A key feature of GT is a tracking mechanism that allows us to overcome data heterogeneity between nodes. We develop a novel decentralized tracking mechanism, K-GT, which enables communication-efficient local updates in GT while inheriting the data-independence property of GT. We prove a convergence rate for K-GT on smooth non-convex functions and prove that it reduces the communication overhead asymptotically by a linear factor K, where K denotes the number of local steps. We illustrate the robustness and effectiveness of this heterogeneity correction on convex and non-convex benchmark problems and a non-convex neural network training task with the MNIST dataset.

Optimization Methods & Software

2024-03-12

DOI : 10.1080/10556788.2024.2322095

Quantitative T2 Mapping of Acute Pancreatitis

F. Poroes; N. Vietti Violi; G. Piazza; E. Uldry; E. Lazaro-Fontanet et al. 

Background: Quantification of the T2 signal by means of T2 mapping in acute pancreatitis (AP) has the potential to quantify the parenchymal edema. Quantitative T2 mapping may overcome the limitations of previously reported scoring systems for reliable assessment of AP. Purpose: To evaluate MR-derived pancreatic T2 mapping values in AP and correlate them with markers of disease severity. Study Type: Prospective single-center study. Population: 76 adults with AP (20-91 years, females/males: 39/37). Field Strength/Sequence: Fat suppressed multiecho spin-echo prototype sequence to quantify T2 signal at 3T MRI. Assessment: The severity of AP was assessed clinically, biologically, and by contrast-enhanced CT (CECT) performed 48-72 hours after symptom onset. MRI was then performed <= 24 hours after CT. Two readers blinded to any clinical information independently evaluated the T2 values by placing three regions of interest inside the pancreatic head, body, and tail on the T2 mapping MR sequence. Results were compared with corresponding CECT images as the standard and clinical severity parameters, using the length of hospital stay as our primary endpoint. Statistical Tests: Continuous variables were compared using the Spearman's rank correlation coefficient, analysis of variance (ANOVA) or Student's t-test. Results: T2 values significantly correlated with the length of hospital stay (r(s)(74) = 0.29), CT severity index (CTSI) (r(s)(73) = 0.61; CTSI 0-3: 72 +/- 14 msec, CTSI 4-10: 88 +/- 15), intensive care unit (ICU) admission (t(2.77) = -3.41) and presence of organ failure (t(6.72) = -3.42), whereas the CTSI and Ranson score were not significantly related with ICU admission (CTSI: P = 0.24; Ranson score: P = 0.24) and organ failure (CTSI: P = 0.11; Ranson score P = 0.11). Conclusion: T2 mapping correlates with AP severity parameters and is useful for assessing the severity of AP with higher sensitivity than the usual clinical and radiological scoring systems.

Journal Of Magnetic Resonance Imaging

2024-03-14

DOI : 10.1002/jmri.29355

The Origins of Gas Accreted by Supermassive Black Holes: The Importance of Recycled Gas

E. Choi; R. S. Somerville; J. P. Ostriker; M. Hirschmann; T. Naab 

We investigate the fueling mechanisms of supermassive black holes (SMBHs) by analyzing 10 zoom-in cosmological simulations of massive galaxies, with stellar masses 1011-12 M circle dot and SMBH masses 108.9-9.7 M circle dot at z = 0, featuring various major and minor merger events. By tracing the gas history in these simulations, we categorize the gas accreted by the central SMBHs based on its origin. Gas that belonged to a different galaxy before accretion onto the BH is labeled as (i) “external,” while smoothly accreted cosmic gas is classified as (ii) “smooth.” Gas produced within the primary halo through stellar evolution and subsequently accreted by the SMBH is classified as (iii) “recycled.” Our analysis, which includes stellar feedback, reveals that the primary fuel source for SMBHs is the recycled gas from dying stars. This recycled gas from stars in the inner region of the galaxy readily collapses toward the center, triggering starbursts and simultaneously fueling the SMBH. Galaxy mergers also play a crucial role in fueling SMBHs in massive galaxies, as SMBHs in massive halos tend to accrete a higher fraction of external gas from mergers compared to smoothly accreted gas. However, on average, it takes approximately 1.85 Gyr for external gas to enter the main galaxy and accrete onto the SMBH. Considering the presence of various other gas triggers for active galactic nucleus (AGN) activity alongside this time delay, the association between AGNs and mergers may not always be obvious.

Astrophysical Journal

2024-03-01

Vol. 964 , num. 1, p. 54.

DOI : 10.3847/1538-4357/ad245a

Near-Room-Temperature Detection of Aromatic Compounds with Inkjet-Printed Plasticized Polymer Composites

M. M. Kiaee; T. Maeder; J. Brugger 

Chemiresistive gas sensors composed of a thermoplastic polymer matrix and conductive fillers offer various advantages for detecting volatile organic compounds (VOCs), including low power consumption due to near-room-temperature operation, high sensitivity, and inherent selectivity toward VOCs. However, such sensors have a slow response time as the polymer matrix often has a glass transition temperature (T-g) higher than the sensor operating temperature slowing the analyte diffusion to/from the polymer. A plasticizer lowers polymer T-g to match the sensor operation temperature, reducing its response time. In this study, the effect of a plasticizer diethylene glycol dibenzoate (DEGDB) on the sensing properties of polystyrene (PS)-carbon black (CB) composite is investigated to obtain sensors with a fast response time and high sensitivity to VOCs. The sensors are fabricated via drop-on-demand inkjet printing, providing a high degree of control over the sensory film morphology and reproducibility. A design-of-experiment (DoE) approach is adopted to find the optimum ink and print parameters with a minimum number of experiments. As a result, sensors with 30 times faster response time and 25 times higher effective sensitivity are obtained while operating near room temperature (27 degrees C). Furthermore, the sensors show high sensitivity toward aromatic hydrocarbons (toluene, benzene, and ethylbenzene), with a sub-10 ppm limit of detection (LoD) and a negligible sensitivity toward humidity. Our results show the potential of PS-DEGDB-CB composite as a selective and cost-effective sensory material compatible with large-scale manufacturing techniques for selective near-room-temperature detection of toxic VOCs.

Acs Sensors

2024-03-13

Vol. 9 , num. 3, p. 1382-1390.

DOI : 10.1021/acssensors.3c02406

Scalable semantic 3D mapping of coral reefs with deep learning

J. Sauder; G. Banc-Prandi; A. Meibom; D. Tuia 

Coral reefs are among the most diverse ecosystems on our planet, and essential to the livelihood of hundreds of millions of people who depend on them for food security, income from tourism and coastal protection. Unfortunately, most coral reefs are existentially threatened by global climate change and local anthropogenic pressures. To better understand the dynamics underlying deterioration of reefs, monitoring at high spatial and temporal resolution is key. However, conventional monitoring methods for quantifying coral cover and species abundance are limited in scale due to the extensive manual labor required. Although computer vision tools have been employed to aid in this process, in particular structure-from-motion (SfM) photogrammetry for 3D mapping and deep neural networks for image segmentation, analysis of the data products creates a bottleneck, effectively limiting their scalability. This paper presents a new paradigm for mapping underwater environments from ego-motion video, unifying 3D mapping systems that use machine learning to adapt to challenging conditions under water, combined with a modern approach for semantic segmentation of images. The method is exemplified on coral reefs in the northern Gulf of Aqaba, Red Sea, demonstrating high-precision 3D semantic mapping at unprecedented scale with significantly reduced required labor costs: given a trained model, a 100 m video transect acquired within 5 min of diving with a cheap consumer-grade camera can be fully automatically transformed into a semantic point cloud within 5 min. We demonstrate the spatial accuracy of our method and the semantic segmentation performance (of at least 80% total accuracy), and publish a large dataset of ego-motion videos from the northern Gulf of Aqaba, along with a dataset of video frames annotated for dense semantic segmentation of benthic classes. Our approach significantly scales up coral reef monitoring by taking a leap towards fully automatic analysis of video transects. The method advances coral reef transects by reducing the labor, equipment, logistics, and computing cost. This can help to inform conservation policies more efficiently. The underlying computational method of learning-based Structure-from-Motion has broad implications for fast low-cost mapping of underwater environments other than coral reefs.

Methods In Ecology And Evolution

2024-03-14

DOI : 10.1111/2041-210X.14307

Well-Defined Ti Surface Sites in Ziegler-Natta Pre-Catalysts from 47/49Ti Solid-State Nuclear Magnetic Resonance Spectroscopy

A. V. Yakimov; C. J. Kaul; Y. Kakiuchi; S. Sabisch; F. M. Bolner et al. 

Treatment of Ziegler-Natta (ZN) catalysts with BCl3 improves their activity by increasing the number of active sites. Here we show how Ti-47/49 solid-state nuclear magnetic resonance (NMR) spectroscopy enables us to understand the electronic structure of the Ti surface sites present in such treated ZN pre-catalysts, prior to activation with alkyl aluminum. High-field (21.1 T) and low-temperature (similar to 100 K) NMR augmented by DFT modeling on the pre-catalyst and corresponding molecular analogues enables the detection of Ti-47/49 NMR signatures and a molecular level understanding of the electronic structure of Ti surface sites. The associated Ti surface sites exhibit Ti-49 NMR signatures (delta(iso, exp) = -170 ppm; C-Q,C- exp = 9.3 MHz; kappa = 0.05) corresponding to well-defined fully chlorinated hexacoordinated Ti sites adsorbed on a distorted surface of the MgCl2 support, formed upon post-treatment with BCl3 and removal of the alkoxo ligands, paralleling the increased polymerization activity.

Journal Of Physical Chemistry Letters

2024-03-13

Vol. 15 , num. 11, p. 3178-3184.

DOI : 10.1021/acs.jpclett.3c03119

Viral peptide conjugates for metal-warhead delivery to chromatin

L. K. Batchelor; L. De Falco; P. J. Dyson; C. A. Davey 

The presence of heavy metal groups can endow compounds with unique structural and chemical attributes beneficial for developing highly potent therapeutic agents and effective molecular labels. However, metallocompound binding site specificity is a major challenge that dictates the level of off-site targeting, which is a limiting factor in finding safer and more effective metal-based drugs. Here we designed and tested a family of metallopeptide conjugates based on two different chromatin-tethering viral proteins and a drug being repurposed for cancer, the Au(i) anti-arthritic auranofin. The viral peptides associate with the acidic patch of the nucleosome while the gold moiety can bind allosterically to the H3 H113 imidazole. To achieve synthesis of the conjugates, we also engineered a sulfur-free, nucleosome-binding Kaposi’s sarcoma herpesvirus LANA peptide with a methionine-to-ornithine substitution and coupled the peptide to the metal group in a final step using click chemistry. The four conjugates tested are all selectively cytotoxic towards tumor cell lines, but the choice of viral peptide and mode of linkage to the Au(i) group influences metal binding site preference. Our findings suggest that viral peptide-metalloconjugates have potential for use in chromatin delivery of therapeutic warheads and as nucleosome-specific tags.

Rsc Advances

2024-03-14

Vol. 14 , num. 13, p. 8718-8725.

DOI : 10.1039/d4ra01617c

Performance polyamides built on a sustainable carbohydrate core

L. P. Manker; M. A. C. Hedou; C. Broggi; M. J. F. Jones; K. Kortsen et al. 

Sustainably producing plastics with performance properties across a variety of materials chemistries is a major challenge-especially considering that most performance materials use aromatic precursors that are still difficult to source sustainably. Here we demonstrate catalyst-free, melt polymerization of dimethyl glyoxylate xylose, a stabilized carbohydrate that can be synthesized from agricultural waste with 97% atom efficiency, into amorphous polyamides with performances comparable to fossil-based semi-aromatic alternatives. Despite the presence of a carbohydrate core, these materials retain their thermomechanical properties through multiple rounds of high-shear mechanical recycling and could be chemically recycled. Techno-economic and life-cycle analyses suggest selling prices close to those of nylon 66 with a reduction of global warming potential of up to 75%. This work illustrates the versatility of a carbohydrate moiety to impart performance that can compete with that of semi-aromatic polymers across two important materials chemistries.

Nature Sustainability

2024-03-13

DOI : 10.1038/s41893-024-01298-7

Towards a muon collider (vol 83, 864, 2023)

C. Accettura; D. Adams; R. Agarwal; C. Ahdida; C. Aime et al. 

European Physical Journal C

2024-01-15

Vol. 84 , num. 1, p. 36.

DOI : 10.1140/epjc/s10052-023-12257-5

Rare predicted loss-of-function variants of type I IFN immunity genes are associated with life-threatening COVID-19 (vol 15, 22, 2023)

D. Matuozzo; E. Talouarn; A. Marchal; P. Zhang; J. Manry et al. 

Genome Medicine

2024-01-06

Vol. 16 , num. 1, p. 6.

DOI : 10.1186/s13073-023-01278-0

Representation learning algorithms for inferring machine independent latent features in pedestals in JET and AUG

A. E. Jaervinen; A. Kit; Y. R. J. Poels; S. Wiesen; V. Menkovski et al. 

Variational autoencoder (VAE)-based representation learning algorithms are explored for their capability to disentangle tokamak size dependence from other dependencies in a dataset of thousands of observed pedestal electron density and temperature profiles from JET and ASDEX Upgrade tokamaks. Representation learning aims to establish a useful representation that characterizes the dataset. In the context of magnetic confinement fusion devices, a useful representation could be considered to map the high-dimensional observations to a manifold that represents the actual degrees of freedom of the plasma scenario. A desired property for these representations is organization of the information into disentangled variables, enabling interpretation of the latent variables as representations of semantically meaningful characteristics of the data. The representation learning algorithms in this work are based on VAE that encodes the pedestal profile information into a reduced dimensionality latent space and learns to reconstruct the full profile information given the latent representation. Attaching an auxiliary regression objective for the machine control parameter configuration, broadly following the architecture of the domain invariant variational autoencoder (DIVA), the model learns to associate device control parameters with the latent representation. With this multimachine dataset, the representation does encode density scaling with device size that is qualitatively consistent with Greenwald density limit scaling. However, if the major radius of the device is given through a common regression objective with the other machine control parameters, the latent state of the representation struggles to clearly disentangle the device size from changes of the other machine control parameters. When separating the device size as an independent latent variable with dedicated regression objectives, similar to separation of domain and class labels in the original DIVA publication, the latent space becomes well organized as a function of the device size.

Physics Of Plasmas

2024-03-01

Vol. 31 , num. 3, p. 032508.

DOI : 10.1063/5.0177005

Interfacial engineering through lead binding using crown ethers in perovskite solar cells

S-J. Kim; Y. Kim; R. K. Chitumalla; G. Ham; T-D. Nguyen et al. 

In the domain of perovskite solar cells (PSCs), the imperative to reconcile impressive photovoltaic performance with lead-related issue and environmental stability has driven innovative solutions. This study pioneers an approach that not only rectifies lead leakage but also places paramount importance on the attainment of rigorous interfacial passivation. Crown ethers, notably benzo-18-crown-6-ether (B18C6), were strategically integrated at the perovskite-hole transport material interface. Crown ethers exhibit a dual role: efficiently sequestering and immobilizing Pb2+ ions through host-guest complexation and simultaneously establishing a robust interfacial passivation layer. Selected crown ether candidates, guided by density functional theory (DFT) calculations, demonstrated proficiency in binding Pb2+ ions and optimizing interfacial energetics. Photovoltaic devices incorporating these materials achieved exceptional power conversion efficiency (PCE), notably 21.7% for B18C6, underscoring their efficacy in lead binding and interfacial passivation. Analytical techniques, including time-of-flight secondary ion mass spectrometry (ToF-SIMS), ultraviolet photoelectron spectroscopy (UPS), time-resolved photoluminescence (TRPL), and transient absorption spectroscopy (TAS), unequivocally affirmed Pb2+ ion capture and suppression of non-radiative recombination. Notably, these PSCs maintained efficiency even after enduring 300 h of exposure to 85% relative humidity. This research underscores the transformative potential of crown ethers, simultaneously addressing lead binding and stringent interfacial passivation for sustainable PSCs poised to commercialize and advance renewable energy applications. (c) 2024 Science Press and Dalian Institute of Chemical Physics, Chinese Academy of Sciences. Published by ELSEVIER B.V. and Science Press All rights reserved.

Journal Of Energy Chemistry

2024-02-09

Vol. 92 , p. 263-270.

DOI : 10.1016/j.jechem.2024.01.042

Spatio-temporal patterns and drivers of CH4 and CO2 fluxes from rivers and lakes in highly urbanized areas

L. Fan; J. Cheng; Y. Xie; L. Xu; A. Buttler et al. 

Gaseous carbon exchange at the water-air interface of rivers and lakes is an essential process for regional and global carbon cycle assessments. Many studies have shown that rivers surrounding urban landscapes can be hotspots for greenhouse gas (GHG) emissions. Here we investigated the variability of diffusive GHG (methane [CH4] and carbon dioxide [CO2]) emissions from rivers in different landscapes (i.e., urban, agricultural and mixed) and from lakes in Suzhou, a highly urbanized region in eastern China. GHG emissions in the Suzhou metropolitan water network followed a typical seasonal pattern, with the highest fluxes in summer, and were primarily influenced by temperature and dissolved oxygen concentration. Surprisingly, lakes were emission hotspots, with mean CH4 and CO2 fluxes of 2.80 and 128.89 mg m- 2 h-1, respectively, translating to a total CO2- equivalent flux of 0.21 g CO2-eq m- 2 d-1. The global warming potential of urban and mixed rivers (0.19 g CO2- eq m- 2 d-1) was comparable to that for lakes, but about twice the value for agricultural rivers (0.10 g CO2-eq m- 2 d-1). Factors related to the high GHG emissions in lakes included hypoxic water conditions and an adequate nutrient supply. Riverine CH4 emissions were primarily associated with the concentrations of total dissolved solids (TDS), ammonia-nitrogen and chlorophyll a. CO2 emissions in rivers were mainly closely related to TDS, with suitable conditions allowing rapid organic matter decomposition. Compared with other types of rivers, urban rivers had more available organic matter and therefore higher CO2 emissions. Overall, this study em- phasizes the need for a deeper understanding of the impact of GHG emissions from different water types on global warming in rapidly urbanizing regions. Flexible management measures are urgently needed to mitigate CO2 and CH4 emissions more effectively in the context of the shrinking gap between urban and rural areas with growing socio-economic development.

Science Of The Total Environment

2024-03-25

Vol. 918 , p. 170689.

DOI : 10.1016/j.scitotenv.2024.170689

Homogeneous vs. heterogeneous photo-Fenton elimination of antibiotic-resistant bacteria bearing intracellular or extracellular resistance: Do resistance mechanisms interfere with disinfection pathways?

J. Decker; T-T. M. Le; J. M. Entenza; I. d. C. Gonzalez; A. H. Lehmann et al. 

The present study aimed to fill the knowledge gap between the implications of intracellular and extracellular antibiotic resistance mechanisms may inflict on the inactivation pathways of the photo-Fenton process under mild conditions. It was thus designed as a cross-comparison of the effect of homogeneous and heterogeneous photo-Fenton (near-neutral pH, [Fe]=1 mg/L, and [H2O2]=10 mg/L) on seven strains of Staphylococcus aureus exhibiting different mechanisms of antibiotic resistance, or susceptibility. Additionally, variations in antibiotic tolerance (MIC test) and relative changes in the presence of antibiotic resistance genes were qualitatively monitored during treatment using PCR. The results suggest that resistance to antibiotics does not confer enhanced resistance to photo-Fenton, as it attained a 4-logU reduction within 50-100 min for all strains, regardless of resistance status. Strains that express intracellular resistance mechanisms do not pose a risk; however, strains that express external mechanisms for their defense against antibiotics occasionally interfere with the inactivation process. This phenomenon was mainly linked to the cell wall thickening of some of the externally resistant strains as compared to their susceptible homologues. Eventually, by conferring resistance to antibiotics, this cell wall alteration may reduce susceptibility to Fenton-related reagents by either reducing their intracellular diffusion or rendering cell walls less prone to leaching upon extracellular attacks. In addition, the photo-Fenton process either remained unchanged or lowered the antibiotic resistance threshold. Moreover, the homogeneous photo-Fenton system considerably lowered the detection of antibiotic resistance genes within 90 min with respect to hv, hv/H2O2, or heterogeneous photo-Fenton. In conclusion, the results suggest that the homogeneous photo-Fenton system could be an effective treatment for hindering the spread of antibiotic resistance, but treatment conditions should aim to maximize the degradation of ARG, as their concentration decreases more slowly than that of bacteria.

Journal Of Environmental Chemical Engineering

2024-02-10

Vol. 12 , num. 2, p. 112147.

DOI : 10.1016/j.jece.2024.112147

Using deep learning-based approaches to characterise ageing in different tissue components of normal breast tissue of women with different risk of developing breast cancer

S. Y. Chen; M. P. Centeno; G. Verghese; G. Booker; I. Wall et al. 

Journal Of Pathology

2023-12-01

18th Annual Meeting of the European-Association-of-Neuro-Oncology (EANO), Rotterdam, NETHERLANDS, SEP 21-24, 2023.

p. S13-S13

Machine learning models for prediction of electrochemical properties in supercapacitor electrodes using MXene and graphene nanoplatelets

M. Shariq; S. Marimuthu; A. R. Dixit; S. Chattopadhyaya; S. Pandiaraj et al. 

Herein, machine learning (ML) models using multiple linear regression (MLR), support vector regression (SVR), random forest (RF) and artificial neural network (ANN) are developed and compared to predict the output features viz. specific capacitance (Csp), electrical conductivity (sigma) and sheet resistance (Rs) for MXene/Graphene Nanoplatelets (GNPs) based energy storage devices. These output features are modeled as a function of wt.% in different weight ratios of GNPs in MXene, optimum potential window and scan rates. The datasets are obtained by the real time output measurements through the experimental runs of these composites in different weight ratios. Among these models, ANN had achieved the highest performance followed by MLR, SVR and RF. From both the experimental and ANN results, the electrode with 20 wt% of GNPs in MXene (MG-80) exhibited the highest Csp of 226.6F/g at 5 mV/s with a long cycle life having 84.2 % retention even after 5000 cycles of charging-discharging. ANN model is further utilized to predict the cyclic stability of MG-80 electrode upto 10,000 cycles and the results show the accuracy of the ML model to fabricate storage devices. Furthermore, the structure of MXene/GNPs composites are investigated by different characterization techniques. XRD spectra confirmed the successful synthesis of MXene and the successful intercalation of GNPs into MXene sheets. The morphology of the embedded GNPs in layered MXenes are determined through FE-SEM/EDX and HR-TEM analysis. The increase in the surface area and pore volume in the MXene/GNPs composite are revealed by BET measurements. XPS is utilized to find out the chemical element states of the bare MXene as well as its composite with GNPs.

Chemical Engineering Journal

2024-02-15

Vol. 484 , p. 149502.

DOI : 10.1016/j.cej.2024.149502

Measuring electrical properties in semiconductor devices by pixelated STEM and off-axis electron holography (or convergent beams vs. plane waves).

D. Cooper; L. Bruas; M. Bryan; V. Boureau 

We demonstrate the use of both pixelated differential phase contrast (DPC) scanning transmission electron microscopy (STEM) and off-axis electron holography (EH) for the measurement of electric fields and assess the advantages and limitations of each technique when applied to technologically relevant samples. Three different types of samples are examined, firstly a simple highly-doped Si pn junction. Then a SiGe superlattice is examined to evaluate the effects of the mean inner potential on the measured signal. Finally, an InGaN/GaN microwire light-emitting diode (LED) device is examined which has a polarization field, variations of mean inner potential and a wurtzite crystal lattice. We discuss aspects such as spatial resolution and sensitivity, and the concept of pseudo-field is defined. However, the most important point is the need to limit the influence of diffraction contrast to obtain accurate measurements. In this respect, the use of a plane electron wave for EH is clearly beneficial when compared to the use of a convergent beam for pixelated DPC STEM.

Micron

2024-02-09

Vol. 179 , p. 103594.

DOI : 10.1016/j.micron.2024.103594

Detailed asteroseismic modelling of RR Lyrae stars with non-radial modes

H. E. Netzel; L. Molnar; M. Joyce 

Photometric observations from the last decade have revealed additional low-amplitude periodicities in many classical pulsators that are likely due to pulsations in non-radial modes. One group of multimode RR Lyrae stars, the so-called 0.61 stars, is particularly interesting. In these stars, the radial first overtone is accompanied by additional signals with period ratios around 0.61. The most promising explanation for these signals is pulsation in non-radial modes of degrees 8 and 9. If the theory behind the additional signals in the 0.61 stars is substantiated, it would allow us to use non-radial modes to study classical pulsators. We aim to perform asteroseismic modelling of selected 0.61 stars with independently determined physical parameters to test whether this assumption behind the modelling leads to correct results. Namely, we test whether the additional signals are indeed due to non-radial modes of the proposed moderate degrees. We selected a number of RR Lyrae stars that are also 0.61 stars and have good observational constraints on their other physical parameters. We assume that the nature of those modes is correctly explained with non-radial modes of degrees 8 or 9. Using this assumption and observational constraints on physical parameters, we performed asteroseismic modelling to test whether the observed periods and period ratios can be reproduced. For the majority of selected targets, we obtained a good match between observed and calculated periods and period ratios. For a few targets however, the results obtained are ambiguous and not straightforward to interpret.

Monthly Notices Of The Royal Astronomical Society

2023-09-11

Vol. 525 , num. 4, p. 5378-5387.

DOI : 10.1093/mnras/stad2611

Simultaneous Evaluation of Bone Cut and Implant Placement Accuracy in Robotic-Assisted Total Knee Arthroplasty

K. Cosendey; J. Stanovici; H. Cadas; P. Omoumi; B. M. Jolles et al. 

Background: This study aimed to evaluate the accuracy of bone cuts and implant placements, simultaneously, for total knee arthroplasty (TKA) performed using a system with an active robotic arm. Methods: Two experienced orthopaedic surgeons performed TKA on ten cadaveric legs. Computed tomography scans were performed to compare the bone cuts and implant placements with the preoperative planning. The differences between the planned and actual bone cuts and implant placements were assessed using positional and angular errors in the three anatomical planes. Additionally, the cut-implant deviations were calculated. Statistical analysis was performed to detect systematic errors in the bone cuts and implant placements and to quantify the correlations between these errors. Results: The root-mean-square (RMS) errors of the bone cuts (with respect to the planning) were between 0.7-1.5 mm and 0.6-1.7 degrees. The RMS implant placement errors (with respect to the planning) varied between 0.6-1.6 mm and 0.4-1.5 degrees, except for the femur and tibia in the sagittal plane (2.9 degrees). Systematic errors in the bone cuts and implant placements were observed, respectively, in three and two degrees of freedom. For cut-implant deviations, the RMS values ranged between 0.3-2.0 mm and 0.6-1.9 degrees. The bone cut and implant placement errors were significantly correlated in eight degrees-of-freedom (rho >= 0.67, p < 0.05). Conclusions: With most of the errors below 2 mm or 2 degrees, this study supported the value of active robotic TKA in achieving accurate bone cuts and implant placements. The findings also highlighted the need for both accurate bone cuts and proper implantation technique to achieve accurate implant placements.

Journal Of Clinical Medicine

2024-03-01

Vol. 13 , num. 5, p. 1293.

DOI : 10.3390/jcm13051293

Measurements of Σ electromagnetic form factors in the timelike region using the untagged initial-state radiation technique

M. Ablikim; M. N. Achasov; P. Adlarson; O. Afedulidis; X. C. Ai et al. 

The process e thorn e- -> sigma thorn sigma over bar – is studied from threshold up to 3.04 GeV=c2 via the initial -state radiation technique using data with an integrated luminosity of 12.0 fb-1, collected at center-of-mass energies between 3.773 and 4.258 GeV with the BESIII detector at the BEPCII collider. The pair production cross sections and the effective form factors of sigma are measured in eleven sigma thorn sigma over bar – invariant mass intervals from threshold to 3.04 GeV=c2. The results are consistent with the previous results from Belle and BESIII. Furthermore, the branching fractions of the decays J=psi ->sigma thorn sigma over bar – and psi o3686 thorn -> sigma thorn sigma over bar – are determined and the obtained results are consistent with the previous results of BESIII.

Physical Review D

2024-02-28

Vol. 109 , num. 3, p. 034029.

DOI : 10.1103/PhysRevD.109.034029

Hyperthermic Intrathoracic Chemotherapy (HITOC) Improves Malignant Pleural Mesothelioma Control Through a Tumor Specific Cytotoxic Immune Response

S. Cavin; Y. Hao; A. Gkasti; L. E. Chriqui; D. Marie et al. 

British Journal Of Surgery

2023-06-09

Annual Meeting of the Swiss-College-of-Surgeons (SCS), Basel, SWITZERLAND, JUN 07-09, 2023.

p. znad178002

DOI : 10.1093/bjs/znad178.002

Constraining the baryonic feedback with cosmic shear using the DES Year-3 small-scale measurements

A. Chen; G. Arico; D. Huterer; R. E. Angulo; N. Weaverdyck et al. 

We use the small scales of the Dark Energy Survey (DES) Year-3 cosmic shear measurements, which are excluded from the DES Year-3 cosmological analysis, to constrain the baryonic feedback. To model the baryonic feedback, we adopt a baryonic correction model and use the numerical package BACCOEMU to accelerate the evaluation of the baryonic non-linear matter power spectrum. We design our analysis pipeline to focus on the constraints of the baryonic suppression effects, utilizing the implication given by a principal component analysis on the Fisher forecasts. Our constraint on the baryonic effects can then be used to better model and ameliorate the effects of baryons in producing cosmological constraints from the next-generation large-scale structure surveys. We detect the baryonic suppression on the cosmic shear measurements with a similar to 2 sigma significance. The characteristic halo mass for which half of the gas is ejected by baryonic feedback is constrained to be M-c > 10(13.2) h(-1) M-circle dot (95 per cent C.L.). The best-fitting baryonic suppression is similar to 5 per cent at k = 1.0 Mpc h(-1) and similar to 15 per cent at k = 5.0 Mpc h(-1). Our findings are robust with respect to the assumptions about the cosmological parameters, specifics of the baryonic model, and intrinsic alignments.

Monthly Notices Of The Royal Astronomical Society

2022-12-08

Vol. 518 , num. 4, p. 5340-5355.

DOI : 10.1093/mnras/stac3213

Inborn errors of type I interferon immunity in patients with symptomatic acute hepatitis E

A. Saadat; J. Gouttenoire; P. Ripellino; D. Semela; S. Amar et al. 

Background and Aims:The clinical spectrum of human infection by HEV ranges from asymptomatic to severe acute hepatitis. Furthermore, HEV can cause diverse neurological manifestations, especially Parsonage-Turner syndrome. Here, we used a large-scale human genomic approach to search for genetic determinants of severe clinical presentations of HEV infection. Approach and Results:We performed whole genome sequencing in 3 groups of study participants with PCR-proven acute HEV infection: (1) 24 patients with symptomatic acute hepatitis E; (2) 12 patients with HEV-associated Parsonage-Turner syndrome; and (3) 16 asymptomatic blood donors (controls). For variant calling and annotation, we used GATK4 best practices followed by Variant Effect Predictor (VEP) and Annovar. For variant classification, we implemented the American College of Medical Genetics and Genomics/Association for Molecular Pathology Bayesian classification framework in R. Variants with a probability of pathogenicity >0.9 were considered damaging. We used all genes with at least 1 damaging variant as input for pathway enrichment analyses.We observed a significant enrichment of type I interferon response pathways in the symptomatic hepatitis group: 10 out of 24 patients carried a damaging variant in one of 9 genes encoding either intracellular viral sensors (IFIH1, DDX58, TLR3, POLR3B, POLR3C) or other molecules involved in type I interferon response [interferon regulatory factor 7 (IRF7), MYD88, OAS3, GAPDH]. We did not find any enriched pathway in the Parsonage-Turner syndrome group or in the controls. Approach and Results:We performed whole genome sequencing in 3 groups of study participants with PCR-proven acute HEV infection: (1) 24 patients with symptomatic acute hepatitis E; (2) 12 patients with HEV-associated Parsonage-Turner syndrome; and (3) 16 asymptomatic blood donors (controls). For variant calling and annotation, we used GATK4 best practices followed by Variant Effect Predictor (VEP) and Annovar. For variant classification, we implemented the American College of Medical Genetics and Genomics/Association for Molecular Pathology Bayesian classification framework in R. Variants with a probability of pathogenicity >0.9 were considered damaging. We used all genes with at least 1 damaging variant as input for pathway enrichment analyses.We observed a significant enrichment of type I interferon response pathways in the symptomatic hepatitis group: 10 out of 24 patients carried a damaging variant in one of 9 genes encoding either intracellular viral sensors (IFIH1, DDX58, TLR3, POLR3B, POLR3C) or other molecules involved in type I interferon response [interferon regulatory factor 7 (IRF7), MYD88, OAS3, GAPDH]. We did not find any enriched pathway in the Parsonage-Turner syndrome group or in the controls. Conclusions:Our results highlight the essential role of type I interferon in preventing symptomatic acute hepatitis E.

Hepatology

2023-12-08

DOI : 10.1097/HEP.0000000000000701

Towards an Understanding of Hydraulic Sensitivity: Graph Theory Contributions to Water Distribution Analysis

M. Adraoui; E. B. Diop; S. A. Ebnou Abdem; R. Azmi; J. Chenal 

Water distribution systems (WDSs) are complex networks with numerous interconnected junctions and pipes. The robustness and reliability of these systems are critically dependent on their network structure, necessitating detailed analysis for proactive leak detection to maintain integrity and functionality. This study addresses gaps in traditional WDS analysis by integrating hydraulic measures with graph theory to improve sensitivity analysis for leak detection. Through case studies of five distinct WDSs, we investigate the relationship between hydraulic measures and graph theory metrics. Our findings demonstrate the collective impact of these factors on leak detection and system efficiency. The research provides enhanced insights into WDS operational dynamics and highlights the significant potential of graph theory to bolster network resilience and reliability.

Water

2024-03-01

Vol. 16 , num. 5, p. 646.

DOI : 10.3390/w16050646

Autoantibodies against type I IFNs in humans with alternative NF-κB pathway deficiency

T. Le Voyer; A. V. Parent; X. Liu; A. Cederholm; A. Gervais et al. 

Patients with autoimmune polyendocrinopathy syndrome type 1 (APS-1) caused by autosomal recessive AIRE deficiency produce autoantibodies that neutralize type I interferons (IFNs) 1,2 , conferring a predisposition to life-threatening COVID-19 pneumonia 3 . Here we report that patients with autosomal recessive NIK or RELB deficiency, or a specific type of autosomal-dominant NF-kappa B2 deficiency, also have neutralizing autoantibodies against type I IFNs and are at higher risk of getting life-threatening COVID-19 pneumonia. In patients with autosomal-dominant NF-kappa B2 deficiency, these autoantibodies are found only in individuals who are heterozygous for variants associated with both transcription (p52 activity) loss of function (LOF) due to impaired p100 processing to generate p52, and regulatory (I kappa B delta activity) gain of function (GOF) due to the accumulation of unprocessed p100, therefore increasing the inhibitory activity of I kappa B delta (hereafter, p52LOF/I kappa B delta GOF). By contrast, neutralizing autoantibodies against type I IFNs are not found in individuals who are heterozygous for NFKB2 variants causing haploinsufficiency of p100 and p52 (hereafter, p52LOF/I kappa B delta LOF) or gain-of-function of p52 (hereafter, p52GOF/I kappa B delta LOF). In contrast to patients with APS-1, patients with disorders of NIK, RELB or NF-kappa B2 have very few tissue-specific autoantibodies. However, their thymuses have an abnormal structure, with few AIRE-expressing medullary thymic epithelial cells. Human inborn errors of the alternative NF-kappa B pathway impair the development of AIRE-expressing medullary thymic epithelial cells, thereby underlying the production of autoantibodies against type I IFNs and predisposition to viral diseases.|Inborn errors of the alternative NF-kappa B pathway in humans impair the development of AIRE-expressing medullary thymic epithelial cells, thereby underlying the production of autoantibodies against type I IFNs and predisposition to viral diseases

Nature

2023-11-08

DOI : 10.1038/s41586-023-06717-x

Silicon microresonator arrays: A comprehensive study on fabrication techniques and pH-controlled stress-induced variations in cantilever stiffness

G. Brunetti; A. De Pastina; C. Rotella; V. Usov; G. Villanueva et al. 

We introduce a detailed design and fabrication process of Silicon microcantilever arrays for biomolecular detection in liquid environment, utilized with laser readout. We present typical fabrication problems and provide related solutions to obtain high quality resonators via a robust, reproducible and high-yield process. Sensors in these arrays are individually functionalized with self-assembled chemical monolayers exposing various pH-active end-groups into solution. Dynamic-mode controlled frequency measurements in varying pH solutions result in stress-induced change of the sensor spring constant. pH changes in the solution lead to deprotonation of exposed functional chemical groups at high pH and the repulsive charges induced strain is proportional to the quantity and confinement of charges at the sensor interface. These built-up strains that affect the mechanical stiffness can be reversibly relaxed when exposed again to low pH environments.

Microelectronic Engineering

2024-02-08

Vol. 287 , p. 112154.

DOI : 10.1016/j.mee.2024.112154

Asset life, leverage, and debt maturity matching

T. Geelen; J. Hajda; E. Morellec; A. Winegar 

Capital ages and must eventually be replaced. We propose a theory of financing in which firms borrow to finance investment and deleverage as capital ages to have enough financial slack to finance replacement investments. To achieve these dynamics, firms issue debt with a maturity that matches the useful life of assets and a repayment schedule that reflects the need to free up debt capacity as capital ages. In the model, leverage and debt maturity are negatively related to capital age while debt maturity and the length of debt cycles are positively related to asset life. We provide empirical evidence that strongly supports these predictions.

Journal Of Financial Economics

2024-02-09

Vol. 154 , p. 103796.

DOI : 10.1016/j.jfineco.2024.103796

Safety, tolerability and blinding efficiency of non-invasive deep transcranial temporal interference stimulation: first experience from more than 250 sessions

P. Vassiliadis; E. Stiennon; F. Windel; M. J. Wessel; E. Beanato et al. 

Objective. Selective neuromodulation of deep brain regions has for a long time only been possible through invasive approaches, because of the steep depth-focality trade-off of conventional non-invasive brain stimulation (NIBS) techniques. Approach. An approach that has recently emerged for deep NIBS in humans is transcranial Temporal Interference Stimulation (tTIS). However, a crucial aspect for its potential wide use is to ensure that it is tolerable, compatible with efficient blinding and safe. Main results. Here, we show the favorable tolerability and safety profiles and the robust blinding efficiency of deep tTIS targeting the striatum or hippocampus by leveraging a large dataset (119 participants, 257 sessions), including young and older adults and patients with traumatic brain injury. tTIS-evoked sensations were generally rated as ‘mild’, were equivalent in active and placebo tTIS conditions and did not enable participants to discern stimulation type. Significance. Overall, tTIS emerges as a promising tool for deep NIBS for robust double-blind, placebo-controlled designs.

Journal Of Neural Engineering

2024-04-01

Vol. 21 , num. 2, p. 024001.

DOI : 10.1088/1741-2552/ad2d32

NBI optimization on SMART and implications for scenario development

M. Podesta; D. J. Cruz-Zabala; F. M. Poli; J. Dominguez-Palacios; J. W. Berkery et al. 

The SMall Aspect Ratio Tokamak (SMART) under commissioning at the University of Seville, Spain, aims to explore confinement properties and possible advantages in confinement for compact/spherical tokamaks operating at negative vs. positive triangularity. This work explores the benefits of auxiliary heating through Neutral Beam Injection (NBI) for SMART scenarios beyond the initial Ohmic phase of operations, in support of the device’s mission. Expected values of electron and ion temperature achievable with NBI heating are first predicted for the current flat-top phase, including modeling to optimize the NBI injection geometry to maximize NBI absorption and minimize losses for a given equilibrium. Simulations are then extended for a selected case to cover the current ramp-up phase. Differences with results obtained for the flat-top phase indicate the importance of determining the plasma evolution over time, as well as self-consistently determining the edge plasma parameters for reliable time-dependent simulations. Initial simulation results indicate the advantage of auxiliary NBI heating to achieve nearly double values of pressure and stored energy compared to Ohmic discharges, thus significantly increasing the device’s performance. The scenarios developed in this work will also contribute to diagnostic development and optimization for SMART, as well as providing test cases for initial predictions of macro- and micro-instabilities.

Plasma Physics And Controlled Fusion

2024-04-01

Vol. 66 , num. 4, p. 045021.

DOI : 10.1088/1361-6587/ad2edc

Gibbs sampling the posterior of neural networks

G. Piccioli; E. Troiani; L. Zdeborova 

In this paper, we study sampling from a posterior derived from a neural network. We propose a new probabilistic model consisting of adding noise at every pre- and post-activation in the network, arguing that the resulting posterior can be sampled using an efficient Gibbs sampler. For small models, the Gibbs sampler attains similar performances as the state-of-the-art Markov chain Monte Carlo methods, such as the Hamiltonian Monte Carlo or the Metropolis adjusted Langevin algorithm, both on real and synthetic data. By framing our analysis in the teacher-student setting, we introduce a thermalization criterion that allows us to detect when an algorithm, when run on data with synthetic labels, fails to sample from the posterior. The criterion is based on the fact that in the teacher-student setting we can initialize an algorithm directly at equilibrium.

Journal Of Physics A-Mathematical And Theoretical

2024-03-22

Vol. 57 , num. 12, p. 125002.

DOI : 10.1088/1751-8121/ad2c26

Field-controlled multicritical behavior and emergent universality in fully frustrated quantum magnets

Y. Fan; N. Xi; C. Liu; B. Normand; R. Yu 

Phase transitions in condensed matter are a source of exotic emergent properties. We study the fully frustrated bilayer Heisenberg antiferromagnet to demonstrate that an applied magnetic field creates a previously unknown emergent criticality. The quantum phase diagram contains four states with distinctly different symmetries, all but one pair separated by first-order transitions. We show by quantum Monte Carlo simulations that the thermal phase diagram is dominated by a wall of discontinuities extending between the dimer-triplet phases and the singlet-containing phases. This wall is terminated at finite temperatures by a critical line, which becomes multicritical where the Berezinskii-Kosterlitz-Thouless (BKT) transition of the dimer-triplet antiferromagnet and the thermal Ising transition of the singlet-triplet crystal phase also terminate. The combination of merging symmetries leads to a 4-state Potts universality not contained in the microscopic Hamiltonian, which we interpret within the Ashkin-Teller model. Our results represent a systematic step in understanding emergent phenomena in quantum magnetic materials, including the “Shastry-Sutherland compound” SrCu2(BO3)2.

Npj Quantum Materials

2024-03-09

Vol. 9 , num. 1, p. 25.

DOI : 10.1038/s41535-024-00636-4

Roger F. Harrington and the Method of Moments: Part 2: Electrodynamics

J. R. Mosig 

The method of moments (MOM), as introduced by Roger F. Harrington more than 50 years ago, is reviewed in the context of the classic potential integral equation (IE) formulations applied to both electrostatic (part 1) and electrodynamic or full-wave problems (part 2). A systematic treatment is presented, based on the concept of discrete Green’s functions (GFs). For the sake of simplicity and clarity, the development is restricted to geometries composed of 2D metallic plates embedded in a homogeneous medium. Within this framework, original analytical developments are presented that simplify the formulations and enable the implementation of point-matching (PM) and Galerkin strategies without the need for a numerical evaluation of multidimensional integrals. Simple Matlab codes are provided, allowing the reader not only to reproduce but also to go beyond the pioneering results of Harrington, to whom this article pays an undisguised homage.

Ieee Antennas And Propagation Magazine

2024-03-05

DOI : 10.1109/MAP.2024.3362251

Nanolithography of the nanocorral structure of chemisorbed oxygen atoms on the graphitic lattice

S. Li; K. V. Agrawal 

Controlled atomic patterning is an attractive tool to fine tune properties of graphitic lattice. Several O-functionalized derivatives of graphitic lattice have been widely studied, e.g., graphene oxide, reduced graphene oxide, and functionalized carbon nanotubes. A controlled patterning of chemisorbed O atom is highly desired to fine tune physical and chemical properties, e.g., bandgap, conductivity, hydrophilicity, reactivity, etc. However, patterning of chemisorbed O on the graphitic lattice at the nanometer scale has not been reported. In this study, using scanning tunneling microscopy (STM), we manipulate chemisorbed O (epoxy) on the graphitic lattice, on demand, on the desired atom, on an atom-by-atom basis. We show that chemisorbed O can be desorbed when an energy exceeding the energy barrier for desorption (-1.3 eV) is supplied as the bias voltage for imaging. This resulted in pristine, defect-free, and clean graphitic lattice at the site of desorption. Nanometer-scale patterns with resolution of oxygen-free regions surrounded by oxygen-rich regions could be achieved by scanning a predefined area. A distinct imaging effects was observed with low and high bias voltage-based scanning which is attributed to the local density of states of the O-functionalized graphitic lattice. Overall, the novel atomic-oxygen nanolithography of graphitic surface opens pathways for studying physicochemical properties of the functional groups in nanometer-scale confinement.

Carbon

2024-02-11

Vol. 221 , p. 118897.

DOI : 10.1016/j.carbon.2024.118897

Performance Comparison of Cables With Partial Transposition

C. Frittitta; P. Bruzzone; H. Bajas; F. Dematte; K. Sedlak 

The need of full transposition of the current carrying elements (strands) in large cables is frequently retained as top design criterion for conductors operating in pulsed mode. However, when the transposition error, i.e., the inductance difference among the strands, is small and the inter-strand resistance is low, the criterion can be relaxed for a certain range of operating conditions. In this work, two partly transposed cables made of 18 Nb3Sn strands and one copper core (cu +6 + 12) and 19 Nb3Sn strands (1 + 6 + 12) are assembled in a SULTAN sample and tested under various operating conditions. No significant performance difference is observed, i.e., the 19 strands cable has slightly higher current sharing temperature, T-cs, than the 18 strands cable, as predictable from the superconductor cross section. The inductance imbalance in the 1 + 6 + 12 cable does not lead to either instability or performance loss. The test results support the soundness of the conductor layout of EUROfusion DEMO, where the 19 strands assembly is used as the first cable stage of the react & wind conductor.

Ieee Transactions On Applied Superconductivity

2024-08-01

Vol. 34 , num. 5, p. 4803205.

DOI : 10.1109/TASC.2024.3367804

Avoidance of Concave Obstacles Through Rotation of Nonlinear Dynamics

L. Huber; J-J. Slotine; A. Billard 

Controlling complex tasks in robotic systems, such as circular motion for cleaning or following curvy lines, can be dealt with using nonlinear vector fields. This article introduces a novel approach called the rotational obstacle avoidance method (ROAM) for adapting the initial dynamics when obstacles partially occlude the workspace. ROAM presents a closed-form solution that effectively avoids star-shaped obstacles in spaces of arbitrary dimensions by rotating the initial dynamics toward the tangent space. The algorithm enables navigation within obstacle hulls and can be customized to actively move away from surfaces while guaranteeing the presence of only a single saddle point on the boundary of each obstacle. We introduce a sequence of mappings to extend the approach for general nonlinear dynamics. Moreover, ROAM extends its capabilities to handle multiobstacle environments and provides the ability to constrain dynamics within a safe tube. By utilizing weighted vector-tree summation, we successfully navigate around general concave obstacles represented as a tree-of-stars. Through experimental evaluation, ROAM demonstrates superior performance in minimizing occurrences of local minima and maintaining similarity to the initial dynamics, outperforming existing approaches in multiobstacle simulations. Due to its simplicity, the proposed method is highly reactive and can be applied effectively in dynamic environments. This was demonstrated during the collision-free navigation of a 7-degree-of-freedom robot arm around dynamic obstacles.

Ieee Transactions On Robotics

2024-01-01

Vol. 40 , p. 1983-2002.

DOI : 10.1109/TRO.2023.3344034

Gene expression of Pocillopora damicornis coral larvae in response to acidification and ocean warming

Y. Sun; Y. Lan; N. Radecker; H. Sheng; G. Diaz-Pulido et al. 

Objectives The endosymbiosis with Symbiodiniaceae is key to the ecological success of reef-building corals. However, climate change is threatening to destabilize this symbiosis on a global scale. Most studies looking into the response of corals to heat stress and ocean acidification focus on coral colonies. As such, our knowledge of symbiotic interactions and stress response in other stages of the coral lifecycle remains limited. Establishing transcriptomic resources for coral larvae under stress can thus provide a foundation for understanding the genomic basis of symbiosis, and its susceptibility to climate change. Here, we present a gene expression dataset generated from larvae of the coral Pocillopora damicornis in response to exposure to acidification and elevated temperature conditions below the bleaching threshold of the symbiosis. Data description This dataset is comprised of 16 samples (30 larvae per sample) collected from four treatments (Control, High pCO(2), High Temperature, and Combined pCO(2) and Temperature treatments). Freshly collected larvae were exposed to treatment conditions for five days, providing valuable insights into gene expression in this vulnerable stage of the lifecycle. In combination with previously published datasets, this transcriptomic resource will facilitate the in-depth investigation of the effects of ocean acidification and elevated temperature on coral larvae and its implication for symbiosis.

Bmc Genomic Data

2024-03-08

Vol. 25 , num. 1, p. 28.

DOI : 10.1186/s12863-024-01211-3

Controlling crystal cleavage in focused ion beam shaped specimens for surface spectroscopy

A. Hunter; C. M. Putzke; I. Gaponenko; A. Tamai; F. Baumberger et al. 

Our understanding of quantum materials is commonly based on precise determinations of their electronic spectrum by spectroscopic means, most notably angle-resolved photoemission spectroscopy (ARPES) and scanning tunneling microscopy. Both require atomically clean and flat crystal surfaces, which are traditionally prepared by in situ mechanical cleaving in ultrahigh vacuum chambers. We present a new approach that addresses three main issues of the current state-of-the-art methods: (1) Cleaving is a highly stochastic and, thus, inefficient process; (2) fracture processes are governed by the bonds in a bulk crystal, and many materials and surfaces simply do not cleave; and (3) the location of the cleave is random, preventing data collection at specified regions of interest. Our new workflow is based on focused ion beam machining of micro-strain lenses, in which shape (rather than crystalline) anisotropy dictates the plane of cleavage, which can be placed at a specific target layer. As proof-of-principle, we show ARPES results from micro-cleaves of Sr2RuO4 along the ac plane and from two surface orientations of SrTiO3, a notoriously difficult to cleave cubic perovskite.

Review Of Scientific Instruments

2024-03-01

Vol. 95 , num. 3, p. 033905.

DOI : 10.1063/5.0186480

Direct synthesis of nanocrystalline single-layer porous graphene for hydrogen sieving

C. Kocaman; L. S. Bondaz; M. Rezaei; J. Hao; K. V. Agrawal 

Porous single -layer graphene is promising as the selective layer for membrane-based gas separation thanks to the atomic thickness of the pore which can yield high permselective flux. Direct synthesis of porous graphene by chemical vapor deposition (CVD) is highly attractive to reduce the number of steps in membrane fabrication. This has been demonstrated in the past by incorporating pores as grain-boundary defects, however, pore density in graphene has been limited because of challenges in increasing grain density of single layers to nanocrystalline regime. Herein, we systematically tune the CVD conditions including growth temperature, methane partial pressure and methane/hydrogen ratio to find a low-temperature growth regime where continuous unfragmented graphene film could be synthesized while avoiding multilayers. The resulting graphene is nanocrystalline composed of misoriented nanometer-scale grains with a high density of hydrogen-permeable multivacancy defects or pores. Centimeter-scale single -layer porous graphene membranes yield extremely high H2/SF6 selectivity, reaching above 1000, confirming the high-quality of porous graphene with pores smaller than 0.55 nm, consistent with the structure and distribution of vacancy defects revealed with microscopy.

Carbon

2024-02-13

Vol. 221 , p. 118866.

DOI : 10.1016/j.carbon.2024.118866

Invasive palms have more efficient and prolonged CO2 assimilation compared to native sub-Mediterranean vegetation

T. Juillard; C. Grossiord; M. Conedera; J. Deluigi; G. B. Pezzatti et al. 

In sub-Mediterranean ecosystems, shade-tolerant broadleaf evergreens, especially the invasive Trachycarpus fortunei, are spreading uncontrollably in the forest understorey, impeding the regeneration of the native deciduous woody vegetation. Most invasive species benefit from high-light environments, as they often have a resource-acquisitive strategy with high photosynthetic rates. Yet, evergreen neophytes, such as T. fortunei, grow mainly in dark understoreys, which raises the question about the physiological mechanisms allowing it to thrive and, eventually, outcompete the native vegetation. For one year, we compared the photosynthetic light-use efficiency of T. fortunei and seven competitors (one evergreen and six deciduous species) to understand possible physiological drivers of this invasion process. The work was done in invaded sub-Mediterranean forests in Southern Switzerland and Northern Italy. Measurements included the seasonal photosynthetic capacity (Amax), net assimilation (Anet), apparent quantum yield (qLCP), light compensation point of photosynthesis (LCP), chlorophyll content (CC), chlorophyll fluorescence (Fv /Fm), leaf soluble sugar (SSL) and starch concentrations (STL), nitrogen (LNC), and dry matter (LDMC) contents. During the entire year, T. fortunei had similar assimilation rates to the evergreen and deciduous competitors. However, in October, Amax and Anet of T. fortunei were higher than the other evergreen species, while most deciduous plants started losing their foliage. While no photosynthetic disadvantage was found for T. fortunei, we observed less seasonal variability in Anet, qLCP, SSL, STL, and LDMC, and a lower or similar qLCP, Fv/Fm, CC, SSL, STL, and LDMC in this species than in its competitors. We highlight that October was the only month when T. fortunei had a photosynthetic advantage over the native sub-Mediterranean evergreen vegetation, while during the rest of the year, it showed similar assimilation rates as evergreen and deciduous species. Forests with sparse canopies in October might be particularly favourable for T. fortunei, due to the benefits of high light conditions for its assimilation rates compared to native evergreens. Moreover, the low seasonal variability in physiological traits indicates that as winters get milder and growing seasons longer, the invasive palm may take a further competitive advantage over the native vegetation.

Forest Ecology And Management

2024-02-03

Vol. 556 , p. 121743.

DOI : 10.1016/j.foreco.2024.121743

Toward plasma drifts in EMC3: Implementation of gradient, divergence, and particle tracing schemes

R. De Wolf; F. Reimold; Y. Feng; M. B. C. Jacobs; W. Dekeyser et al. 

This paper presents a first implementation of gradient, divergence, and particle tracing schemes for the EMC3 code, a stochastic 3D plasma fluid code widely employed for edge plasma and impurity transport modeling in tokamaks and stellarators. These schemes are essential to accommodate plasma drift computations, which are currently absent in the code. Plasma drifts have been recognized to significantly influence transport of particles and energy, and their inclusion in future code upgrades will substantially enhance the code’s predictive capabilities. For gradient and divergence calculations, we introduce a second-order least-squares gradient scheme. We confirm the second-order convergence properties and assess the accuracy of several analytical test cases in the presence of synthetic noise. In the second part of this paper, we employ the validated gradient scheme in a fourth-order Runge-Kutta particle tracing scheme to trace a particle through a generic drift velocity field. The impact of synthetic noise on the scheme’s performance is investigated by evaluating various error metrics. We find that the implemented schemes function as intended and exhibit sufficient accuracy to enable drift computations.

Contributions To Plasma Physics

2024-03-08

DOI : 10.1002/ctpp.202300154

Small-amplitude Red Giants Elucidate the Nature of the Tip of the Red Giant Branch as a Standard Candle

R. I. Anderson; N. W. Koblischke; L. Eyer 

The tip of the red giant branch (TRGB) is an important standard candle for determining luminosity distances. Although several 105 small-amplitude red giant stars (SARGs) have been discovered, variability was previously considered irrelevant for the TRGB as a standard candle. Here, we show that all stars near the TRGB are SARGs that follow several period-luminosity sequences, of which sequence A is younger than sequence B as predicted by stellar evolution. We measure apparent TRGB magnitudes, m TRGB, in the Large Magellanic Cloud (LMC) using Sobel filters applied to photometry from the Optical Gravitational Lensing Experiment and the ESA Gaia mission, and we identify several weaknesses in a recent LMC-based TRGB calibration used to measure the Hubble constant. We consider four samples: all red giants (RGs), SARGs, and sequences A and B. The B sequence is best suited for measuring distances to old RG populations, with M F814W,0 = -4.025 +/- 0.014(stat.) +/- 0.033(syst.) mag assuming the LMC’s geometric distance. Control of systematics is demonstrated using detailed simulations. Population diversity affects m TRGB at a level exceeding the stated precision: the SARG and A-sequence samples yield 0.039 and 0.085 mag fainter (at 5 sigma significance) m TRGB values, respectively. Ensuring equivalent RG populations is crucial to measuring accurate TRGB distances. Additionally, luminosity function smoothing (similar to 0.02 mag) and edge detection response weighting (as much as -0.06 mag) can further bias TRGB measurements, with the latter introducing a tip-contrast relation. We are optimistic that variable RGs will enable further improvements to the TRGB as a standard candle.

Astrophysical Journal Letters

2024-03-01

Vol. 963 , num. 2, p. L43.

DOI : 10.3847/2041-8213/ad284d

A Reduced Order Model for Domain Decompositions with Non-conforming Interfaces

E. Zappon; A. Manzoni; P. Gervasio; A. Quarteroni 

In this paper, we propose a reduced-order modeling strategy for two-way Dirichlet-Neumann parametric coupled problems solved with domain-decomposition (DD) sub-structuring methods. We split the original coupled differential problem into two sub-problems with Dirichlet and Neumann interface conditions, respectively. After discretization by, e.g., the finite element method, the full-order model (FOM) is solved by Dirichlet-Neumann iterations between the two sub-problems until interface convergence is reached. We then apply the reduced basis (RB) method to obtain a low-dimensional representation of the solution of each sub-problem. Furthermore, we apply the discrete empirical interpolation method (DEIM) at the interface level to achieve a fully reduced-order representation of the DD techniques implemented. To deal with non-conforming FE interface discretizations, we employ the INTERNODES method combined with the interface DEIM reduction. The reduced-order model (ROM) is then solved by sub-iterating between the two reduced-order sub-problems until the convergence of the approximated high-fidelity interface solutions. The ROM scheme is numerically verified on both steady and unsteady coupled problems, in the case of non-conforming FE interfaces.

Journal Of Scientific Computing

2024-04-01

Vol. 99 , num. 1, p. 22.

DOI : 10.1007/s10915-024-02465-w

On learning latent dynamics of the AUG plasma state

A. Kit; A. E. Jarvinen; Y. R. J. Poels; S. Wiesen; V. Menkovski et al. 

In this work, we demonstrate the utility of state representation learning applied to modeling the time evolution of electron density and temperature profiles at ASDEX-Upgrade (AUG). The proposed model is a deep neural network, which learns to map the high dimensional profile observations to a lower dimensional state. The mapped states, alongside the original profile’s corresponding machine parameters, are used to learn a forward model to propagate the state in time. We show that this approach is able to predict AUG discharges using only a selected set of machine parameters. The state is then further conditioned to encode information about the confinement regime, which yields a simple baseline linear classifier, while still retaining the information needed to predict the evolution of profiles. We, then, discuss the potential use cases and limitations of state representation learning algorithms applied to fusion devices.

Physics Of Plasmas

2024-03-01

Vol. 31 , num. 3, p. 032504.

DOI : 10.1063/5.0174128

Structural study of nickelate based heterostructures

L. Varbaro; B. Mundet; S. Bandyopadhyay; C. Dominguez; J. Fowlie et al. 

Heterostructures consisting of SmNiO3 and NdNiO3 alternating layers with additional LaAlO3 spacer layers were grown and fully characterized by means of x-ray diffraction, atomic force microscopy, and scanning transmission electron microscopy. A change in the orientation of the orthorhombic long-axis of the nickelate layers is observed when a single unit cell of LaAlO3 is inserted between SmNiO3 and NdNiO3, in agreement with density functional theory calculations. At the same time, the structure of the ultra-thin rhombohedral LaAlO3 layers is affected by their proximity to orthorhombic nickelate layers, with both scanning transmission electron microscopy studies and density functional theory calculations revealing a weak antipolar motion of the La-cation in the LaAlO3 layers that is not present in the bulk rhombohedral structure of this compound.

Apl Materials

2024-03-01

Vol. 12 , num. 3, p. 031104.

DOI : 10.1063/5.0184306

Synergistic enhancement of photo-assisted water splitting by mesoporous TiO2/NiFe LDH composite nanomaterials

P. Vensaus; Y. Liang; F. C. Herrera; G. J. A. A. Soler-Illia; M. Lingenfelder 

In the last decade, photo-assisted water splitting to generate hydrogen and oxygen has become a key process in the quest for clean energy technologies. In this context, the sluggish kinetics of the oxygen evolution reaction (OER) is still a limitation. The combination of an efficient electrocatalyst with a light-absorbing species can provide an output boost by the additional input of solar energy. In this work, we used ordered mesoporous nanocrystalline TiO2 thin films as a photoactive phase that contain embedded NiFe-based double-layered hydroxides (NiFe-LDH) catalysts for the OER in the mesopores. The structural and electrochemical properties of these materials were studied, taking into account the effect of the Ni:Fe ratio and concentration. Our results indicate that this material shows synergy in the photo-assisted water-splitting activity, as the total current is higher than the combined contributions of dark NiFeOx electrocatalysis and TiO2 photocurrent. Optimization of the NiFe ratio (9:1) and deposition time (60 s) produced an enhancement of up to 18 % in the total current at 1.50 V.

International Journal Of Hydrogen Energy

2024-03-15

Vol. 59 , p. 89-96.

DOI : 10.1016/j.ijhydene.2024.01.325

On-Chip Fully Reconfigurable Artificial Neural Network in 16 nm FinFET for Positron Emission Tomography

A. A. Muntean; Y. Shoshan; S. Yuzhaninov; E. Ripiccini; C. Bruschini et al. 

Smarty is a fully-reconfigurable on-chip feed-forward artificial neural network (ANN) with ten integrated time-to-digital converters (TDCs) designed in a 16 nm FinFET CMOS technology node. The integration of TDCs together with an ANN aims to reduce system complexity and minimize data throughput requirements in positron emission tomography (PET) applications. The TDCs have an average LSB of 53.5 ps. The ANN is fully reconfigurable, the user being able to change its topology as desired within a set of constraints. The chip can execute 363 MOPS with a maximum power consumption of 1.9 mW, for an efficiency of 190 GOPS/W. The system performance was tested in a coincidence measurement setup interfacing Smarty with two groups of five 4 mm x 4 mm analog silicon photomultipliers (A-SiPMs) used as inputs for the TDCs. The ANN succesfully distinguished between six different positions of a radioactive source placed between the two photodetector arrays by solely using the TDC timestamps.

Ieee Journal Of Selected Topics In Quantum Electronics

2024-01-01

Vol. 30 , num. 1, p. 7600213.

DOI : 10.1109/JSTQE.2023.3346957

Doping Engineering for PDP Optimization in SPADs Implemented in 55-nm BCD Process

F. Liu; C. Bruschini; E-H. Toh; P. Zheng; Y. Sun et al. 

We introduce a new family of single-photon avalanche diodes (SPADs) with enhanced depletion regions in a 55-nm Bipolar-CMOS-DMOS (BCD) technology. We demonstrate how to systematically engineer doping profiles in the main junction and in deep p-well layers to achieve high sensitivity and low timing jitter. A family of sub 10 mu m SPADs was designed and fully characterized. With the increase of the well-defined depletion region, the breakdown voltages of three variants are 17.1, 20.6, and 23.0 V, respectively, the peak PDP wavelengths are 450 nm, 540 nm, and 640 nm, respectively. The timing jitter below 50 ps (FWHM) at 5 V excess bias voltage are achieved in SPAD1 and SPAD2. SPAD3 shows a high PDP over a wide spectral range, with a peak PDP of 41.3% at 640 nm, and 22.3% at 850 nm, and the timing jitter 96 ps at 3 V excess bias voltage. The proposed SPADs are suitable to low-pitch, large-format image sensors for high-speed, time-resolved applications and quantum imaging.

Ieee Journal Of Selected Topics In Quantum Electronics

2024-01-01

Vol. 30 , num. 1, p. 3801407.

DOI : 10.1109/JSTQE.2024.3351676

Perfect adaptation achieved by transport limitations governs the inorganic phosphate response in S. cerevisiae

H. M. Yip; S. Cheng; E. J. Olson; M. A. Crone; S. J. Maerkl 

Cells cope with and adapt to ever-changing environmental conditions. Sophisticated regulatory networks allow cells to adjust to these fluctuating environments. One such archetypal system is the Saccharomyces cerevisiae Pho regulon. When external inorganic phosphate (Pi) concentration is low, the Pho regulon activates, expressing genes that scavenge external and internal Pi. However, the precise mechanism controlling this regulon remains elusive. We conducted a systems analysis of the Pho regulon on the single-cell level under well-controlled environmental conditions. This analysis identified a robust, perfectly adapted Pho regulon state in intermediate Pi conditions, and we identified an intermediate nuclear localization state of the transcriptional master regulator Pho4p. The existence of an intermediate nuclear Pho4p state unifies and resolves outstanding incongruities associated with the Pho regulon, explains the observed programmatic states of the Pho regulon, and improves our general understanding of how nature evolves and controls sophisticated gene regulatory networks. We further propose that robustness and perfect adaptation are not achieved through complex network-centric control but by simple transport biophysics. The ubiquity of multitransporter systems suggests that similar mechanisms could govern the function of other regulatory networks as well.

Proceedings Of The National Academy Of Sciences Of The United States Of America

2023-01-10

Vol. 120 , num. 2, p. e2212151120.

DOI : 10.1073/pnas.2212151120

Benzylic C(sp3)-H Azidation: Copper vs Iron Catalysis

A. Renteria-Gomez; R. O. Torres-Ochoa; P. Palamini; R. Simonet-Davin; Q. Wang et al. 

The generation of benzylic radicals through hydrogen atom abstraction (HAT) has been a recent research focus and various C(sp(3))-H bond functionalization protocols have been developed relying on this elementary step. We report herein copper- and iron-catalyzed C(sp(3))-H benzylic azidation reactions using mCPBA and NFSI as oxidant, respectively, and TMSN3 as azide source. The reaction is thought to be initiated via intermolecular abstraction of benzylic hydrogen by the in situ generated heteroatom-centered radicals. The Fe(OTf)(3)-catalyzed azidation protocol displays good chemoselectivity as it takes place preferentially at the secondary and tertiary benzylic C(sp(3))-H bonds over the primary benzylic and tertiary aliphatic carbons. Efforts on the development of catalytic enantioselective processes are also documented.

Helvetica Chimica Acta

2024-03-04

DOI : 10.1002/hlca.202400004

Re-evaluating the mythical divide between traditional and novel cardiovascular risk factors in rheumatoid arthritis

E. Ikdahl; M. J. Stensrud 

Cardiovascular (CV) risk factors for rheumatoid arthritis (RA) are conventionally classified as ‘traditional’ and ‘novel’. We argue that this classification is obsolete and potentially counterproductive. Further, we discuss problems with the common practice of adjusting for traditional CV risk factors in statistical analyses. These analyses do not target well-defined effects of RA on CV risk. Ultimately, we propose a future direction for cardiorheumatology research that prioritises optimising current treatments and identifying novel therapeutic targets over further categorisation of well-known risk factors.

Rmd Open

2024-03-01

Vol. 10 , num. 1, p. e003954.

DOI : 10.1136/rmdopen-2023-003954

Challenges and perspectives of CRISPR-based technology for diagnostic applications

S. Del Giovane; N. Bagheri; A. C. Di Pede; A. Chamorro; S. Ranallo et al. 

The precision and versatility of CRISPR-based techniques, combined with the advantages of nucleic acid-based nanotechnology, hold great promise in transforming the landscape of molecular diagnostics. While significant progress has been made, current CRISPR-based platforms primarly focus on nucleic acid detection. To expand the applicability and fully leverage the advantages offered by CRISPR-based diagnostics, ongoing efforts explore molecular strategies to develop CRISPR sensors capable of detecting a diverse range of analytes beyond nucleic acids. In addition, challenges still persist in the adaptation of CRISPR platforms for point-of-care (POC) applications, involving concerns such as portability and automation, as well as the complexities associated with multiplexing. Here, we provide a detailed classification and comprehensive discussion of molecular strategies facilitating the conversion of non-nucleic acid target binding into CRISPR-powered outputs with an emphasis on their corresponding design principles. Furthermore, the second part of the review outlines current challenges and potential solutions for seamlessly integrating these strategies into user-friendly platforms and rapid tests specifically tailored for point-of-care (POC).

Trac-Trends In Analytical Chemistry

2024-02-13

Vol. 172 , p. 117594.

DOI : 10.1016/j.trac.2024.117594

Ultrahigh-quality-factor micro- and nanomechanical resonators using dissipation dilution

N. J. Engelsen; A. Beccari; T. J. Kippenberg 

Mechanical resonators are widely used in sensors, transducers and optomechanical systems, where mechanical dissipation sets the ultimate limit to performance. Over the past 15 years, the quality factors in strained mechanical resonators have increased by four orders of magnitude, surpassing the previous state of the art achieved in bulk crystalline resonators at room temperature and liquid helium temperatures. In this Review, we describe how these advances were made by leveraging ‘dissipation dilution’-where dissipation is reduced through a combination of static tensile strain and geometric nonlinearity in dynamic strain. We then review the state of the art in strained nanomechanical resonators and discuss the potential for even higher quality factors in crystalline materials. Finally, we detail current and future applications of dissipation-diluted mechanical resonators.|This Review discusses advances in engineering high-quality-factor strained nanomechanical resonators with applications in precision measurements.

Nature Nanotechnology

2024-03-05

DOI : 10.1038/s41565-023-01597-8

Datafication of audiovisual archives: from practice mapping to a thinking model

Y. Yang 

Purpose Recent archiving and curatorial practices took advantage of the advancement in digital technologies, creating immersive and interactive experiences to emphasize the plurality of memory materials, encourage personalized sense-making and extract, manage and share the ever-growing surrounding knowledge. Audiovisual (AV) content, with its growing importance and popularity, is less explored on that end than texts and images. This paper examines the trend of datafication in AV archives and answers the critical question, “What to extract from AV materials and why?”. Design/methodology/approach This study roots in a comprehensive state-of-the-art review of digital methods and curatorial practices in AV archives. The thinking model for mapping AV archive data to purposes is based on pre-existing models for understanding multimedia content and metadata standards. Findings The thinking model connects AV content descriptors (data perspective) and purposes (curatorial perspective) and provides a theoretical map of how information extracted from AV archives should be fused and embedded for memory institutions. The model is constructed by looking into the three broad dimensions of audiovisual content – archival, affective and aesthetic, social and historical. Originality/value This paper contributes uniquely to the intersection of computational archives, audiovisual content and public sense-making experiences. It provides updates and insights to work towards datafied AV archives and cope with the increasing needs in the sense-making end using AV archives.

Journal Of Documentation

2024-03-05

DOI : 10.1108/JD-04-2022-0093

Observation of a Vector Charmoniumlike State at 4.7 GeV/c2 and Search for Zcs in e+e- → K+ K- J/ψ

M. Ablikim; M. N. Achasov; P. Adlarson; O. Afedulidis; X. C. Ai et al. 

Using data samples with an integrated luminosity of 5.85 fb(-1) collected at center-of-mass energies from 4.61 to 4.95 GeV with the BESIII detector operating at the BEPCII storage ring, we measure the cross section for the process e(+)e(-) -> K+ K- J/psi. A new resonance with a mass of M = 4708(-15)(+17) +/- 21 MeV/c(2) and a width of Gamma = 126(-23)(+27) +/-+/- 30 MeV is observed in the energy-dependent line shape of the e(+)e(-) -> K+ K- J/psi. cross section with a significance over 5 sigma. The K(+)J/psi system is also investigated to search for charged charmoniumlike states, but no significant Z(cs)(+) states are observed. Upper limits on the Born cross sections for e+e- -> K-Z(cs)(3985)(+)/K-Z(cs)(4000)(+) + c:c: with Z(cs)(3985)(+/-)/Z(cs)(4000)(+/-) -> K(+/-)J/psi are reported at 90% confidence levels. The ratio of branching fractions {[B(Z(cs)(3985)(+) -> K+J/psi)]/B[Z(cs)(3985)(+) -> ((D) over bar D-0(s)*(+) + (D) over bar*D-0(s)+)]} is measured to be less than 0.03 at 90% confidence level.

Physical Review Letters

2023-11-22

Vol. 131 , num. 21, p. 211902.

DOI : 10.1103/PhysRevLett.131.211902

Gaia Focused Product Release: Radial velocity time series of long-period variables

M. Trabucchi; N. Mowlavi; T. Lebzelter; I. Lecoeur-Taibi; M. Audard et al. 

Context. The third Gaia Data Release (DR3) provided photometric time series of more than 2 million long-period variable (LPV) candidates. Anticipating the publication of full radial-velocity data planned with Data Release 4, this Focused Product Release (FPR) provides radial-velocity time series for a selection of LPV candidates with high-quality observations.Aims. We describe the production and content of the Gaia catalog of LPV radial-velocity time series, and the methods used to compute the variability parameters published as part of the Gaia FPR.Methods. Starting from the DR3 catalog of LPV candidates, we applied several filters to construct a sample of sources with high-quality radial-velocity measurements. We modeled their radial-velocity and photometric time series to derive their periods and amplitudes, and further refined the sample by requiring compatibility between the radial-velocity period and at least one of the G, G(BP), or G(RP) photometric periods.Results. The catalog includes radial-velocity time series and variability parameters for 9614 sources in the magnitude range 6 less than or similar to G/mag less than or similar to 14, including a flagged top-quality subsample of 6093 stars whose radial-velocity periods are fully compatible with the values derived from the G, G(BP), and G(RP) photometric time series. The radial-velocity time series contain a mean of 24 measurements per source taken unevenly over a duration of about three years. We identify the great majority of the sources (88%) as genuine LPV candidates, with about half of them showing a pulsation period and the other half displaying a long secondary period. The remaining 12% of the catalog consists of candidate ellipsoidal binaries. Quality checks against radial velocities available in the literature show excellent agreement. We provide some illustrative examples and cautionary remarks.Conclusions. The publication of radial-velocity time series for almost ten thousand LPV candidates constitutes, by far, the largest such database available to date in the literature. The availability of simultaneous photometric measurements gives a unique added value to the Gaia catalog.

Astronomy & Astrophysics

2023-12-08

Vol. 680 , p. A36.

DOI : 10.1051/0004-6361/202347287

Gaia Focused Product Release: Asteroid orbital solution: Properties and assessment

P. David; F. Mignard; D. Hestroffer; P. Tanga; F. Spoto et al. 

Context. We report the exploitation of a sample of Solar System observations based on data from the third Gaia Data Release (Gaia DR3) of nearly 157 000 asteroids. It extends the epoch astrometric solution over the time coverage planned for the Gaia DR4, which is not expected before the end of 2025. This data set covers more than one full orbital period for the vast majority of these asteroids. The orbital solutions are derived from the Gaia data alone over a relatively short arc compared to the observation history of many of these asteroids.Aims. The work aims to produce orbital elements for a large set of asteroids based on 66 months of accurate astrometry provided by Gaia and to assess the accuracy of these orbital solutions with a comparison to the best available orbits derived from independent observations. A second validation is performed with accurate occultation timings.Methods. We processed the raw astrometric measurements of Gaia to obtain astrometric positions of moving objects with 1D sub-mas accuracy at the bright end. For each asteroid that we matched to the data, an orbit fitting was attempted in the form of the best fit of the initial conditions at the median epoch. The force model included Newtonian and relativistic accelerations to derive the observation equations, which were solved with a linear least-squares fit.Results. Orbits are provided in the form of state vectors in the International Celestial Reference Frame for 156 764 asteroids, including near-Earth objects, main-belt asteroids, and Trojans. For the asteroids with the best observations, the (formal) relative uncertainty sigma(a)/a is better than 10(-10). Results are compared to orbits available from the Jet Propulsion Laboratory and MPC. Their orbits are based on much longer data arcs, but from positions of lower quality. The relative differences in semi-major axes have a mean of 5 x 10(-10) and a scatter of 5 x 10(-9).

Astronomy & Astrophysics

2023-12-08

Vol. 680 , p. A37.

DOI : 10.1051/0004-6361/202347270

Gaia Focused Product Release: Sources from Service Interface Function image analysis Half a million new sources in omega Centauri

K. Weingrill; A. Mints; J. Castaneda; Z. Kostrzewa-Rutkowska; M. Davidson et al. 

Context.Gaia’s readout window strategy is challenged by very dense fields in the sky. Therefore, in addition to standard Gaia observations, full Sky Mapper (SM) images were recorded for nine selected regions in the sky. A new software pipeline exploits these Service Interface Function (SIF) images of crowded fields (CFs), making use of the availability of the full two-dimensional (2D) information. This new pipeline produced half a million additional Gaia sources in the region of the omega Centauri (omega Cen) cluster, which are published with this Focused Product Release. We discuss the dedicated SIF CF data reduction pipeline, validate its data products, and introduce their Gaia archive table.|Aims. Our aim is to improve the completeness of the Gaia source inventory in a very dense region in the sky, omega Cen.|Methods. An adapted version of Gaia’s Source Detection and Image Parameter Determination software located sources in the 2D SIF CF images. These source detections were clustered and assigned to new SIF CF or existing Gaia sources by Gaia s cross-match software. For the new sources, astrometry was calculated using the Astrometric Global Iterative Solution software, and photometry was obtained in the Gaia DR3 reference system. We validated the results by comparing them to the public Gaia DR3 catalogue and external Hubble Space Telescope data.|Results. With this Focused Product Release, 526 587 new sources have been added to the Gaia catalogue in omega Cen. Apart from positions and brightnesses, the additional catalogue contains parallaxes and proper motions, but no meaningful colour information. While SIF CF source parameters generally have a lower precision than nominal Gaia sources, in the cluster centre they increase the depth of the combined catalogue by three magnitudes and improve the source density by a factor of ten.|Conclusions. This first SIF CF data publication already adds great value to the Gaia catalogue. It demonstrates what to expect for the fourth Gaia catalogue, which will contain additional sources for all nine SIF CF regions.

Astronomy & Astrophysics

2023-12-08

Vol. 680 , p. A35.

DOI : 10.1051/0004-6361/202347203

Deoxygenative Transformation of Alcohols via Phosphoranyl Radical from Exogenous Radical Addition

W. Xu; C. Fan; X. Hu; T. Xu 

A general approach to the direct deoxygenative transformation of primary, secondary, and tertiary alcohols has been developed. It undergoes through phosphoranyl radical intermediates generated by the addition of exogenous iodine radical to trivalent alkoxylphosphanes. Since these alkoxylphosphanes are readily in situ obtained from alcohols and commercially available, inexpensive chlorodiphenylphosphine, a diverse range of alcohols with various functional groups can be utilized to proceed deoxygenative cross-couplings with alkenes or aryl iodides. The selective transformation of polyhydroxy substrates and the rapid synthesis of complex organic molecules are also demonstrated with this method.|A general approach to the direct deoxygenative transformation of primary, secondary, and tertiary alcohols has been developed. It undergoes through phosphoranyl radical intermediates generated by the addition of exogenous iodine radical to trivalent alkoxylphosphanes. Since these alkoxylphosphanes are readily in situ obtained from alcohols and commercially available, inexpensive chlorodiphenylphosphine, a diverse range of alcohols with various functional groups can be utilized to proceed deoxygenative cross-couplings with alkenes or aryl iodides. The selective transformation of polyhydroxy substrates and the rapid synthesis of complex organic molecules are also demonstrated with this method. image

Angewandte Chemie-International Edition

2024-03-05

DOI : 10.1002/anie.202401575

Bootstrapping smooth conformal defects in Chern-Simons-matter theories

B. Gabai; A. Sever; D-l. Zhong 

The expectation value of a smooth conformal line defect in a CFT is a conformal invariant functional of its path in space-time. For example, in large N holographic theories, these fundamental observables are dual to the open-string partition function in AdS. In this paper, we develop a bootstrap method for studying them and apply it to conformal line defects in Chern-Simons matter theories. In these cases, the line bootstrap is based on three minimal assumptions – conformal invariance of the line defect, large N factorization, and the spectrum of the two lowest-lying operators at the end of the line. On the basis of these assumptions, we solve the one-dimensional CFT on the line and systematically compute the defect expectation value in an expansion around the straight line. We find that the conformal symmetry of a straight defect is insufficient to fix the answer. Instead, imposing the conformal symmetry of the defect along an arbitrary curved line leads to a functional bootstrap constraint. The solution to this constraint is found to be unique.

Journal Of High Energy Physics

2024-03-08

num. 3, p. 55.

DOI : 10.1007/JHEP03(2024)055

Non-planarity of Markoff graphs mod p

M. De Courcy-Ireland 

We prove the non-planarity of a family of 3-regular graphs constructed from the solutions to the Markoff equation x2 + y2 + z2 = xyz modulo prime numbers greater than 7. The proof uses Euler characteristic and an enumeration of the short cycles in these graphs. Non-planarity for large primes would follow assuming a spectral gap, which was the original motivation. For primes congruent to 1 modulo 4, or congruent to 1, 2, or 4 modulo 7, explicit constructions give an alternate proof of non-planarity.

Commentarii Mathematici Helvetici

2024-01-01

Vol. 99 , num. 1, p. 111-148.

DOI : 10.4171/CMH/566

Unraveling proteoglycofili: a potential new neutrophil defense mechanism

A. Andre; B. M. Valente; J. Skerniskyte; M. Siegwald; L. Debande et al. 

European Journal Of Immunology

2023-09-01

Joint Conference of the Societe-Francaise-dImmunologie (SFI) and the Deutsche-Gesellschaft-fur-Immunologie (DGfI), Strasbourg, FRANCE, SEP 26-29, 2023.

p. 319-319

Recent advances in Rh(I)-catalyzed enantioselective C-H functionalization

Y. Zhang; J-J. Zhang; L. Lou; R. Lin; N. Cramer et al. 

Chiral carbon-carbon (C-C) and carbon-heteroatom (C-X) bonds are pervasive and very essential in natural products, bioactive molecules, and functional materials, and their catalytic construction has emerged as one of the hottest research fields in synthetic organic chemistry. The last decade has witnessed vigorous progress in Rh(I)-catalyzed asymmetric C-H functionalization as a complement to Rh(II) and Rh(III) catalysis. This review aims to provide the most comprehensive and up-to-date summary covering the recent advances in Rh(I)-catalyzed C-H activation for asymmetric functionalization. In addition to the development of diverse reactions, chiral ligand design and mechanistic investigation (inner-sphere mechanism, outer-sphere mechanism, and 1,4-Rh migration) will also be highlighted.

Chemical Society Reviews

2024-02-27

DOI : 10.1039/d3cs00762f

The Strong Integral Input-to-State Stability Property in Dynamical Flow Networks

G. Nilsson; S. Coogan 

Dynamical flow networks serve as macroscopic models for, e.g., transportation networks, queuing networks, and distribution networks. While the flow dynamics in such networks follow the conservation of mass on the links, the outflow from each link is often nonlinear due to, e.g., flow capacity constraints and simultaneous service rate constraints. Such nonlinear constraints imply a limit on the magnitude of exogenous inflow that is able to be accommodated by the network before it becomes overloaded and its state trajectory diverges. This article shows how the strong integral input-to-state stability (Strong iISS) property allows for quantifying the effects of the exogenous inflow on the flow dynamics. The Strong iISS property enables a unified stability analysis of classes of dynamical flow networks that were only partly analyzable before, such as networks with cycles, multicommodity flow networks, and networks with nonmonotone flow dynamics. We present sufficient conditions on the maximum magnitude of exogenous inflow to guarantee input-to-state stability for a dynamical flow network, and we also present cases when this sufficient condition is necessary. The conditions are exemplified on a few existing dynamical flow network models, specifically, fluid queuing models with time-varying exogenous inflows and multicommodity flow models.

Ieee Transactions On Automatic Control

2024-02-01

Vol. 69 , num. 2, p. 1179-1185.

DOI : 10.1109/TAC.2023.3277924

A Distributed Augmenting Path Approach for the Bottleneck Assignment Problem

M. Khoo; T. A. Wood; C. Manzie; I. Shames 

We develop an algorithm to solve the bottleneck assignment problem (BAP) that is amenable to having computation distributed over a network of agents. This consists of exploring how each component of the algorithm can be distributed, with a focus on one component in particular, i.e., the function to search for an augmenting path. An augmenting path is a common tool used in most BAP algorithms and poses a particular challenge for this distributed approach. Given this significance, we compare the properties of two different methods to search for an augmenting path in a bipartite graph. We evaluate the derived approaches with a simulation-based complexity investigation.

Ieee Transactions On Automatic Control

2024-02-01

Vol. 69 , num. 2, p. 1210-1217.

DOI : 10.1109/TAC.2023.3279336

ALGEBRAIC TWISTS OF GL3 x GL2 L-FUNCTIONS

Y. Lin; P. Michel; W. Sawin 

We prove that the coefficients of a GL3 x GL2 Rankin-Selberg L-function do not correlate with a wide class of trace functions of small conductor modulo primes, generalizing the corresponding result of Fouvry, Kowalski, and Michel for GL2 and of Kowalski, Lin, Michel, and Sawin for GL3. This result is inspired by a recent work of P. Sharma who discussed the case of a Dirichlet character of prime modulus.

American Journal Of Mathematics

2023-04-01

Vol. 145 , num. 2.

DOI : 10.1353/ajm.2023.0015

Characterization of a flexible a-Si:H detector for in vivo dosimetry in therapeutic x-ray beams

M. J. Large; A. Bashiri; Y. Dookie; J. McNamara; L. Antognini et al. 

BackgroundThe increasing use of complex and high dose-rate treatments in radiation therapy necessitates advanced detectors to provide accurate dosimetry. Rather than relying on pre-treatment quality assurance (QA) measurements alone, many countries are now mandating the use of in vivo dosimetry, whereby a dosimeter is placed on the surface of the patient during treatment. Ideally, in vivo detectors should be flexible to conform to a patient’s irregular surfaces.PurposeThis study aims to characterize a novel hydrogenated amorphous silicon (a-Si:H) radiation detector for the dosimetry of therapeutic x-ray beams. The detectors are flexible as they are fabricated directly on a flexible polyimide (Kapton) substrate.MethodsThe potential of this technology for application as a real-time flexible detector is investigated through a combined dosimetric and flexibility study. Measurements of fundamental dosimetric quantities were obtained including output factor (OF), dose rate dependence (DPP), energy dependence, percentage depth dose (PDD), and angular dependence. The response of the a-Si:H detectors investigated in this study are benchmarked directly against commercially available ionization chambers and solid-state diodes currently employed for QA practices.ResultsThe a-Si:H detectors exhibit remarkable dose linearities in the direct detection of kV and MV therapeutic x-rays, with calibrated sensitivities ranging from (0.580 +/- 0.002) pC/cGy to (19.36 +/- 0.10) pC/cGy as a function of detector thickness, area, and applied bias. Regarding dosimetry, the a-Si:H detectors accurately obtained OF measurements that parallel commercially available detector solutions. The PDD response closely matched the expected profile as predicted via Geant4 simulations, a PTW Farmer ionization chamber and a PTW ROOS chamber. The most significant variation in the PDD performance was 5.67%, observed at a depth of 3 mm for detectors operated unbiased. With an external bias, the discrepancy in PDD response from reference data was confined to +/- 2.92% for all depths (surface to 250 mm) in water-equivalent plastic. Very little angular dependence is displayed between irradiations at angles of 0 degrees and 180 degrees, with the most significant variation being a 7.71% decrease in collected charge at a 110 degrees relative angle of incidence. Energy dependence and dose per pulse dependence are also reported, with results in agreement with the literature. Most notably, the flexibility of a-Si:H detectors was quantified for sample bending up to a radius of curvature of 7.98 mm, where the recorded photosensitivity degraded by (-4.9 +/- 0.6)% of the initial device response when flat. It is essential to mention that this small bending radius is unlikely during in vivo patient dosimetry. In a more realistic scenario, with a bending radius of 15-20 mm, the variation in detector response remained within +/- 4%. After substantial bending, the detector’s photosensitivity when returned to a flat condition was (99.1 +/- 0.5)% of the original response.ConclusionsThis work successfully characterizes a flexible detector based on thin-film a-Si:H deposited on a Kapton substrate for applications in therapeutic x-ray dosimetry. The detectors exhibit dosimetric performances that parallel commercially available dosimeters, while also demonstrating excellent flexibility results.

Medical Physics

2024-03-03

DOI : 10.1002/mp.17013

Insights from an extensive triaxial testing campaign on a shale for comparative site characterization of a deep geological repository

E. Crisci; S. B. Giger; L. Laloui; A. Ferrari; R. Ewy et al. 

Several boreholes were drilled for site comparison of a deep geological repository (DGR) in Northern Switzerland. The main target of the exploration program was the >100m thick Opalinus Clay, the designated host rock encountered at approximately 450 to 1000 m depth in three different sites. This contribution focuses on the evaluation of geomechanical properties and the deformation behavior from the triaxial testing campaign, both aspects relevant to construction and the assessment of the long-term safety of a DGR. Some 140 triaxial tests were performed on cores from seven different boreholes to evaluate potential differences in material properties by depth and geographic location. Core sampling, preparation chain, and testing protocols were validated before the campaign, and three laboratories were commissioned to perform the tests. A comparison of basic properties from cores used for triaxial testing with a much larger database of complementary core analyses and geophysical logging demonstrates that the performed tests cover the range of expected material properties. Limited to no differences in strength and stiffness are detected from cores at different depths and sites. Despite a relatively large variation in bulk mineralogy of the formation (e.g. clay-mineral content varying between 35 and 75 wt%), the strength values of Opalinus Clay vary only moderately, with equivalent (calculated) unconfined compressive strengths of 21 +/- 5 MPa, for loading directions parallel or perpendicular to bedding. This contrasts with the results of Opalinus Clay from the Rock Laboratory at Mont Terri, where the effect of material composition was more relevant. Assuming a Mohr-Coulomb-type failure law, the transition from peak to post-peak strength comes at the expense of cohesion, and only a small reduction of the shear strength angle. Hence the burial history, tectonic overprint, and current depth mainly control the intact properties by additional cohesion, whereas the post-peak behavior is mainly controlled by bulk mineralogy.

Geomechanics For Energy And The Environment

2024-02-01

Vol. 38 , p. 100508.

DOI : 10.1016/j.gete.2023.100508

Multimodal fusion of liquid biopsy and CT enhances differential diagnosis of early-stage lung adenocarcinoma

Y. Zhang; B. Sun; Y. Yu; J. Lu; Y. Lou et al. 

This research explores the potential of multimodal fusion for the differential diagnosis of early-stage lung adenocarcinoma (LUAD) (tumor sizes < 2 cm). It combines liquid biopsy biomarkers, specifically extracellular vesicle long RNA (evlRNA) and the computed tomography (CT) attributes. The fusion model achieves an impressive area under receiver operating characteristic curve (AUC) of 91.9% for the four-classification of adenocarcinoma, along with a benign-malignant AUC of 94.8% (sensitivity: 89.1%, specificity: 94.3%). These outcomes outperform the diagnostic capabilities of the single-modal models and human experts. A comprehensive SHapley Additive exPlanations (SHAP) is provided to offer deep insights into model predictions. Our findings reveal the complementary interplay between evlRNA and image-based characteristics, underscoring the significance of integrating diverse modalities in diagnosing early-stage LUAD.

Npj Precision Oncology

2024-02-26

Vol. 8 , num. 1, p. 50.

DOI : 10.1038/s41698-024-00551-8

Overview on the Applicability of the ITER/NPP-Like Technologies to the DEMO Plant Electrical System and Promising Alternatives

A. Ferro; T. Franke; E. Gaio; S. Bifaretti; F. Bignucolo et al. 

The Plant Electrical System (PES) of the European DEMOnstration fusion power plant (DEMO), presently under conceptual design, shall supply power to the loads and deliver net power to the Power Transmission Grid (PTG). Starting from the available requirements, the applicability to DEMO PES of the technologies and design approaches adopted in ITER and nuclear power plants (NPP) has been evaluated. This article presents the results of the survey and proposes alternative solutions to deal with the identified criticalities.

Ieee Transactions On Plasma Science

2024-02-21

DOI : 10.1109/TPS.2024.3362198

Room-temperature quantum optomechanics using an ultralow noise cavity

G. Huang; A. Beccari; N. J. Engelsen; T. J. Kippenberg 

At room temperature, mechanical motion driven by the quantum backaction of light has been observed only in pioneering experiments in which an optical restoring force controls the oscillator stiffness1,2. For solid-state mechanical resonators in which oscillations are controlled by the material rigidity, the observation of these effects has been hindered by low mechanical quality factors, optical cavity frequency fluctuations3, thermal intermodulation noise4,5 and photothermal instabilities. Here we overcome these challenges with a phononic-engineered membrane-in-the-middle system. By using phononic-crystal-patterned cavity mirrors, we reduce the cavity frequency noise by more than 700-fold. In this ultralow noise cavity, we insert a membrane resonator with high thermal conductance and a quality factor (Q) of 180 million, engineered using recently developed soft-clamping techniques6,7. These advances enable the operation of the system within a factor of 2.5 of the Heisenberg limit for displacement sensing8, leading to the squeezing of the probe laser by 1.09(1) dB below the vacuum fluctuations. Moreover, the long thermal decoherence time of the membrane oscillator (30 vibrational periods) enables us to prepare conditional displaced thermal states of motion with an occupation of 0.97(2) phonons using a multimode Kalman filter. Our work extends the quantum control of solid-state macroscopic oscillators to room temperature.|A room-temperature demonstration of optomechanical squeezing of light and measurement of mechanical motion approaching the Heisenberg limit using a phononic-engineered membrane-in-the-middle cavity with ultralow noise.

Nature

2024-02-15

Vol. 626 , num. 7999.

DOI : 10.1038/s41586-023-06997-3

Global emergent responses of stream microbial metabolism to glacier shrinkage

T. J. Kohler; M. Bourquin; H. Peter; G. Yvon-Durocher; R. L. Sinsabaugh et al. 

Most cryospheric ecosystems are energy limited. How their energetics will respond to climate change remains largely unknown. This is particularly true for glacier-fed streams, which interface with the cryosphere and initiate some of Earth’s largest river systems. Here, by studying resource stoichiometry and microbial energetics in 154 glacier-fed streams sampled by the Vanishing Glaciers project across Earth’s major mountain ranges, we show that these ecosystems and their benthic microbiome are overall carbon and phosphorus limited. Threshold elemental ratios and low carbon use efficiencies (median: 0.15) modelled from extracellular enzymatic activities corroborate resource limitation in agreement with maintenance metabolism of benthic microorganisms. Space-for-time substitution analyses suggest that glacier shrinkage will stimulate benthic primary production in glacier-fed streams, thereby relieving microbial metabolism from carbon limitation. Concomitantly, we find that increasing streamwater temperature will probably stimulate microbial growth (temperature sensitivity: 0.62 eV). Consequently, elevated microbial demands for phosphorus, but diminishing inputs from subglacial sources, may intensify phosphorus limitation as glaciers shrink. Our study thus unveils a ‘green transition’ towards autotrophy in the world’s glacier-fed streams, entailing shifts in the energetics of their microorganisms.|Glacier shrinkage intensifies phosphorus limitation but alleviates carbon limitation in glacier-fed streams, according to analyses of resource stoichiometry and microbial metabolism in glacier-fed streams from mountain regions.

Nature Geoscience

2024-03-01

DOI : 10.1038/s41561-024-01393-6

SPACE-TIME REDUCED BASIS METHODS FOR PARAMETRIZED UNSTEADY STOKES EQUATIONS

R. Tenderini; N. Mueller; S. Deparis 

In this work, we analyze space-time reduced basis methods for the efficient numerical simulation of haemodynamics in arteries. The classical formulation of the reduced basis (RB) method features dimensionality reduction in space, while finite difference schemes are employed for the time integration of the resulting ordinary differential equation (ODE). Space-time reduced basis (ST–RB) methods extend the dimensionality reduction paradigm to the temporal dimension, projecting the full -order problem onto a low -dimensional spatio-temp oral subspace. Our goal is to investigate the application of ST–RB methods to the unsteady incompressible Stokes equations, with a particular focus on stability. High-fidelity simulations are performed using the finite element (FE) method and BDF2 as a time marching scheme. We consider two different ST–RB methods. In the first onecalled ST–GRB—space-time model order reduction is achieved by means of a Galerkin projection; a spatio-temp oral velocity basis enrichment procedure is introduced to guarantee stability. The second method —called ST–PGRB—is characterized by a Petrov-Galerkin projection, stemming from a suitable minimization of the FOM residual, that allows us to automatically attain stability. The classical RB method -denoted as SRB–TFO—serves as a baseline for the theoretical development. Numerical tests have been conducted on an idealized symmetric bifurcation geometry and on the patient -specific one of a femoropopliteal bypass. The results show that both ST–RB methods provide accurate approximations of the high-fidelity solutions, while considerably reducing the computational cost. In particular, the ST–PGRB method exhibits the best performance, as it features a better computational efficiency while retaining accuracies in accordance with theoretical expectations.

Siam Journal On Scientific Computing

2024-01-01

Vol. 46 , num. 1, p. B1-B32.

DOI : 10.1137/22M1509114

Inhibition of SIRT7 overcomes sorafenib acquired resistance by suppressing ERK1/2 phosphorylation via the DDX3X-mediated NLRP3 inflammasome in hepatocellular carcinoma

Y. Kim; K-Y. Jung; Y. H. Kim; P. Xu; B. E. Kang et al. 

Aims: Sirtuin 7 (SIRT7) plays an important role in tumor development, and has been characterized as a potent regulator of cellular stress. However, the effect of SIRT7 on sorafenib acquired resistance remains unclear and a possible anti-tumor mechanism beyond this process in HCC has not been clarified. We examined the therapeutic potential of SIRT7 and determined whether it functions synergistically with sorafenib to overcome chemoresistance. Methods: Cancer Genome Atlas -liver HCC data and unbiased gene set enrichment analyses were used to identify SIRT7 as a potential effector molecule in sorafenib acquired resistance. Two types of SIRT7 chemical inhibitors were developed to evaluate its therapeutic properties when synergized with sorafenib. Mass spectrometry was performed to discover a direct target of SIRT7, DDX3X, and DDX3X deacetylation levels and protein stability were explored. Moreover, an in vivo xenograft model was used to confirm anti -tumor effect of SIRT7 and DDX3X chemical inhibitors combined with sorafenib. Results: SIRT7 inhibition mediated DDX3X depletion can re -sensitize acquired sorafenib resistance by disrupting NLRP3 inflammasome assembly, finally suppressing hyperactive ERK1/2 signaling in response to NLRP3 inflammasome-mediated IL-1 beta inhibition. Conclusions: SIRT7 is responsible for sorafenib acquired resistance, and its inhibition would be beneficial when combined with sorafenib by suppressing hyperactive pro -cell survival ERK1/2 signaling.

Drug Resistance Updates

2024-01-25

Vol. 73 , p. 101054.

DOI : 10.1016/j.drup.2024.101054

Effects of Hyporheic Exchange and Settlement on the Particle Size Distribution of Colloids

Z. Zhang; G. Jin; H. Tang; W. Shao; Q. Jiang et al. 

Colloid particle size plays an important role in contaminant adsorption and clogging in the hyporheic zone, but it remains unclear how the particle size changes during the transport of colloids. This study investigated the variation of the particle size of colloids in the overlying water and the effects of settlement and hyporheic exchange via laboratory experiments and numerical simulations with two main factors settlement and hyporheic exchange being considered. The results show that the particle size distribution varies when colloids transport in hyporheic zone, and both settlement and hyporheic exchange are involved in the exchange of colloids between stream and streambed. Large-sized particles are mainly controlled by settlement and advection and thus their concentration in the overlying water decreases more quickly; but small-sized particles are mainly controlled by hyporheic exchange and thus their concentration decreases more slowly, and some particles can be resuspended. The increase of retention coefficient and settling velocity will accelerate the transfer of colloids into the streambed. This study may provide important insights into the variation of the particle size of colloids in the overlying water and the effects of settlement and hyporheic exchange.|The distribution of colloidal particle size varies during the transport process in hyporheic zone.Larger sized colloidal particles are affected by settlement more when transport in hyporheic zone, while smaller sized are affected by both hyporheic exchange and settlement.The increase of retention coefficient and settling velocity will accelerate the transfer of colloids into the streambed, and the effect of settling velocity is more sensitive than that of retention coefficient.

Transport In Porous Media

2024-03-06

DOI : 10.1007/s11242-024-02061-4

Large-scale in-silico analysis of CSF dynamics within the subarachnoid space of the optic nerve

D. Rossinelli; G. Fourestey; H. E. Killer; A. Neutzner; G. Iaccarino et al. 

BackgroundImpaired cerebrospinal fluid (CSF) dynamics is involved in the pathophysiology of neurodegenerative diseases of the central nervous system and the optic nerve (ON), including Alzheimer’s and Parkinson’s disease, as well as frontotemporal dementia. The smallness and intricate architecture of the optic nerve subarachnoid space (ONSAS) hamper accurate measurements of CSF dynamics in this space, and effects of geometrical changes due to pathophysiological processes remain unclear. The aim of this study is to investigate CSF dynamics and its response to structural alterations of the ONSAS, from first principles, with supercomputers.MethodsLarge-scale in-silico investigations were performed by means of computational fluid dynamics (CFD) analysis. High-order direct numerical simulations (DNS) have been carried out on ONSAS geometry at a resolution of 1.625 mu m/pixel. Morphological changes on the ONSAS microstructure have been examined in relation to CSF pressure gradient (CSFPG) and wall strain rate, a quantitative proxy for mass transfer of solutes.ResultsA physiological flow speed of 0.5 mm/s is achieved by imposing a hydrostatic pressure gradient of 0.37-0.67 Pa/mm across the ONSAS structure. At constant volumetric rate, the relationship between pressure gradient and CSF-accessible volume is well captured by an exponential curve. The ONSAS microstructure exhibits superior mass transfer compared to other geometrical shapes considered. An ONSAS featuring no microstructure displays a threefold smaller surface area, and a 17-fold decrease in mass transfer rate. Moreover, ONSAS trabeculae seem key players in mass transfer.ConclusionsThe present analysis suggests that a pressure drop of 0.1-0.2 mmHg over 4 cm is sufficient to steadily drive CSF through the entire subarachnoid space. Despite low hydraulic resistance, great heterogeneity in flow speeds puts certain areas of the ONSAS at risk of stagnation. Alterations of the ONSAS architecture aimed at mimicking pathological conditions highlight direct relationships between CSF volume and drainage capability. Compared to the morphological manipulations considered herein, the original ONSAS architecture seems optimized towards providing maximum mass transfer across a wide range of pressure gradients and volumetric rates, with emphasis on trabecular structures. This might shed light on pathophysiological processes leading to damage associated with insufficient CSF flow in patients with optic nerve compartment syndrome.

Fluids And Barriers Of The Cns

2024-02-28

Vol. 21 , num. 1, p. 20.

DOI : 10.1186/s12987-024-00518-8

COMMUNICATION LOWER BOUNDS AND OPTIMAL ALGORITHMS FOR MULTIPLE TENSOR-TIMES-MATRIX COMPUTATION

H. AL Daas; G. Ballard; L. Grigori; S. Kumar; K. Rouse 

Multiple tensor-times-matrix (Multi-TTM) is a key computation in algorithms for computing and operating with the Tucker tensor decomposition, which is frequently used in multidimensional data analysis. We establish communication lower bounds that determine how much data movement is required (under mild conditions) to perform the Multi-TTM computation in parallel. The crux of the proof relies on analytically solving a constrained, nonlinear optimization problem. We also present a parallel algorithm to perform this computation that organizes the processors into a logical grid with twice as many modes as the input tensor. We show that, with correct choices of grid dimensions, the communication cost of the algorithm attains the lower bounds and is therefore communication optimal. Finally, we show that our algorithm can significantly reduce communication compared to the straightforward approach of expressing the computation as a sequence of tensor-times-matrix operations when the input and output tensors vary greatly in size.

Siam Journal On Matrix Analysis And Applications

2024-01-01

Vol. 45 , num. 1, p. 450-477.

DOI : 10.1137/22M1510443

A common NFKB1 variant detected through antibody analysis in UK Biobank predicts risk of infection and allergy

A. Y. Chong; N. Brenner; A. Jimenez-Kaufmann; A. Cortes; M. Hill et al. 

Infectious agents contribute significantly to the global burden of diseases through both acute infection and their chronic sequelae. We leveraged the UK Biobank to identify genetic loci that influence humoral immune response to multiple infections. From 45 genomewide association studies in 9,611 participants from UK Biobank, we identified NFKB1 as a locus associated with quantitative antibody responses to multiple pathogens, including those from the herpes, retro-, and polyoma-virus families. An insertion -deletion variant thought to affect NFKB1 expression (rs28362491), was mapped as the likely causal variant and could play a key role in regulation of the immune response. Using 121 infection- and inflammation -related traits in 487,297 UK Biobank participants, we show that the deletion allele was associated with an increased risk of infection from diverse pathogens but had a protective effect against allergic disease. We propose that altered expression of NFKB1, as a result of the deletion, modulates hematopoietic pathways and likely impacts cell survival, antibody production, and inflammation. Taken together, we show that disruptions to the tightly regulated immune processes may tip the balance between exacerbated immune responses and allergy, or increased risk of infection and impaired resolution of inflammation.

American Journal Of Human Genetics

2024-02-01

Vol. 111 , num. 2.

DOI : 10.1016/j.ajhg.2023.12.013

First-principle based predictions of the effects of negative triangularity on DTT scenarios

A. Mariani; A. Balestri; P. Mantica; G. Merlo; R. Ambrosino et al. 

Plasmas with negative triangularity (NT) shape have been recently shown to be able to achieve H-mode levels of confinement in L-mode, avoiding detrimental edge localised modes. Therefore, this plasma geometry is now studied as a possible viable option for a future fusion reactor. Within this framework, an NT option is under investigation for the full power scenario of the Divertor Tokamak Test (DTT) facility, under construction in Italy, with delta top=-0.32/delta bottom similar or equal to 0.02 top/bottom triangularity values at the separatrix. The transport properties of this scenario are studied in this work. Gyrokinetic GENE simulations and integrated modelling using ASTRA with the quasi-linear trapped gyro-Landau fluid (TGLF) model have been performed. The emerging picture from the ASTRA-TGLF runs with boundary conditions at rho tor=0.94 is that, in the L-mode NT option, the larger peaking of the kinetic profiles in the edge region is not sufficient to recover the loss of the PT H-mode pedestal, and reach similar central temperature values. Two additional shapes are also considered, obtained by flipping the triangularity of the scenarios, to single out the effect of the triangularity sign. A negligible ‘direct’ effect of the triangularity is found for the L-mode, while a small beneficial effect is observed for the H-mode. The ASTRA-TGLF results are validated by GENE and TGLF stand-alone at two selected radii. GENE shows ITG dominant micro-instability and explains the small beneficial effect of the NT for the H-mode as due to a strong reduction of the heat fluxes, when reversing the triangularity, with a relatively high Ti stiffness. An improvement of the predicted performances of the NT DTT scenario could come from rho tor greater than or similar to 0.9 , as indicated by some recent experiments at the tokamak a configuration variable (TCV) and ASDEX Upgrade.

Nuclear Fusion

2024-04-01

Vol. 64 , num. 4, p. 046018.

DOI : 10.1088/1741-4326/ad2abc

Investigation of mycelium film as the adhesive for poplar veneer bonding: insight into interfacial bonding mechanisms

Y. Cheng; C. Long; M. Zhang; W. Wang; W. Sun 

The emergence of mycelium-bonded biocomposites has been stimulated in the quest for sustainable development. These biocomposites exhibit enhanced mechanical properties through hot pressing, with mycelium playing a crucial role as both the adhesive and reinforcing material in this composite system. This study aims to investigate and compare the effectiveness of different mycelium films for veneer bonding, with a specific focus on the interface between the mycelia and the substrate. Two fungal species, Pycnoporus sanguineus and Trametes versicolor, were utilized to colonize poplar veneers for 14 days. Subsequently, a wood bonding interface was successfully established between the mycelium film and the decayed veneer surface. The results revealed that bonded veneers with the mycelium film of Pycnoporus sanguineus exhibited higher adhesion strength with 1.76 +/- 0.16 MPa. A series of analyses have revealed the occurrence of both mechanical and chemical bonds between mycelia and wood. The bonding interface between mycelium and wood was formed by a synergistic combination of mechanical interlocking, hydrogen bonding interaction, Schiff base reaction, and lignin repolymerization. This study provides valuable insights into the underlying mechanisms involved in the formation of interfacial bonding by fungal mycelia.

Wood Material Science & Engineering

2024-02-24

DOI : 10.1080/17480272.2024.2321602

CEERS Key Paper. VIII. Emission-line Ratios from NIRSpec and NIRCam Wide-Field Slitless Spectroscopy at z > 2

B. E. Backhaus; J. R. Trump; N. Pirzkal; G. Barro; S. L. Finkelstein et al. 

We use James Webb Space Telescope Near-Infrared Camera Wide Field Slitless Spectroscopy (NIRCam WFSS) and the Near-Infrared spectrograph (NIRSpec) in the Cosmic Evolution Early Release survey to measure rest-frame optical emission-line ratios of 155 galaxies at z > 2. The blind NIRCam grism observations include a sample of galaxies with bright emission lines that were not observed on the NIRSpec masks. We study the changes of the H alpha, [O III]/H beta, and [Ne III]/[O II] emission lines in terms of redshift by comparing to lower-redshift SDSS, CLEAR, and MOSDEF samples. We find a significant (>3 sigma) correlation between [O III]/H beta with redshift, while [Ne III]/[O II] has a marginal (2 sigma) correlation with redshift. We compare [O III]/H beta and [Ne III]/[O II] to stellar mass and H beta SFR. We find that both emission-line ratios have a correlation with H beta SFR and an anticorrelation with stellar mass across the redshifts 0 < z < 9. Comparison with MAPPINGS V models indicates that these trends are consistent with lower metallicity and higher ionization in low-mass and high-SFR galaxies. We additionally compare to IllustrisTNG predictions and find that they effectively describe the highest [O III]/H beta ratios observed in our sample, without the need to invoke MAPPINGS models with significant shock ionization components.

Astrophysical Journal

2024-02-01

Vol. 962 , num. 2, p. 195.

DOI : 10.3847/1538-4357/ad1520

What is NExT? A new conceptual model for comfort, satisfaction, health, and well-being in buildings

S. Altomonte; S. Kacel; P. W. Martinez; D. Licina 

Buildings are designed to respond to functional and regulatory needs, providing comfortable conditions to occupants, offering satisfactory environmental settings, minimising health risks, and enhancing individual and collective quality of life. Although there are synergies between these goals, no comprehensive framework has yet been formulated to characterize human comfort, satisfaction, health, and well-being in buildings as distinct, yet highly interrelated, constructs. Founded on a critical consolidation of interdisciplinary literature, and of the key performance indicators for the most common factors of environmental quality featured in standards and codes, this paper proposes a new conceptual model that can sustain the whole of human experiences in buildings, addressing the variety of their uses and occupancy. Embracing the notion that environmental stimuli may synergistically or antagonistically combine, at various spatio-temporal resolutions, to influence building- and occupant -related outcomes, the proposed model, NExT, suggests that there could be significant discrepancies between the design and operation strategies aimed at energy efficiency, the conditions demanded for comfortable task performance, what contributes to satisfaction with the indoor environment, and what is required for building users to be healthy and feel well over time. There is a need to fundamentally challenge our understanding of the criteria that are used for designing, measuring, and benchmarking the performance of buildings, encompassing the perspective of the occupant. This implies going beyond designing buildings to ensure neutral acceptance of conditions and prevention of harmful exposures while, instead, driving from interdisciplinary studies to integrate the dimensions of human experience in building research, policies, and practice.

Building And Environment

2024-02-03

Vol. 252 , p. 111234.

DOI : 10.1016/j.buildenv.2024.111234

A Privacy-Preserving Querying Mechanism with High Utility for Electric Vehicles

U. I. Atmaca; S. Biswas; C. Maple; C. Palamidessi 

Electric vehicles (EVs) are becoming more popular due to environmental consciousness. The limited availability of charging stations (CSs), compared to the number of EVs on the road, has led to increased range anxiety and a higher frequency of CS queries during trips. Simultaneously, personal data use for analytics is growing at an unprecedented rate, raising concerns for privacy. One standard for formalising location privacy is geo-indistinguishability as a generalisation of local differential privacy. However, the noise must be tuned properly, considering the implications of potential utility losses. In this paper, we introduce the notion of approximate geo-indistinguishability (AGeoI), which allows EVs to obfuscate their query locations while remaining within their area of interest. It is vital because journeys are often sensitive to a sharp drop in quality of service (QoS). Our method applies AGeoI with dummy data generation to provide two-fold privacy protection for EVs while preserving a high QoS. Analytical insights and experiments demonstrate that the majority of EVs get “privacy-for-free” and that the utility loss caused by the gain in privacy guarantees is minuscule. In addition to providing high QoS, the iterative Bayesian update allows for a private and precise CS occupancy forecast, which is crucial for unforeseen traffic congestion and efficient route planning.

Ieee Open Journal Of Vehicular Technology

2024-01-01

Vol. 5 , p. 262-277.

DOI : 10.1109/OJVT.2024.3360302

RANDOMIZED JOINT DIAGONALIZATION OF SYMMETRIC

H. He; D. Kressner 

Given a family of nearly commuting symmetric matrices, we consider the task of computing an orthogonal matrix that nearly diagonalizes every matrix in the family. In this paper, we propose and analyze randomized joint diagonalization (RJD) for performing this task. RJD applies a standard eigenvalue solver to random linear combinations of the matrices. Unlike existing optimization -based methods, RJD is simple to implement and leverages existing high -quality linear algebra software packages. Our main novel contribution is to prove robust recovery: Given a family that is \epsilon -near to a commuting family, RJD jointly diagonalizes this family, with high probability, up to an error of norm O(\epsilon). We also discuss how the algorithm can be further improved by deflation techniques and demonstrate its state-of-the-art performance by numerical experiments with synthetic and real -world data.

Siam Journal On Matrix Analysis And Applications

2024-01-01

Vol. 45 , num. 1, p. 661-684.

DOI : 10.1137/22M1541265

A Universal Perovskite/C60 Interface Modification via Atomic Layer Deposited Aluminum Oxide for Perovskite Solar Cells and Perovskite-Silicon Tandems

K. Artuk; D. Turkay; M. D. Mensi; J. A. Steele; D. A. Jacobs et al. 

The primary performance limitation in inverted perovskite-based solar cells is the interface between the fullerene-based electron transport layers and the perovskite. Atomic layer deposited thin aluminum oxide (AlOX) interlayers that reduce nonradiative recombination at the perovskite/C-60 interface are developed, resulting in >60 millivolts improvement in open-circuit voltage and 1% absolute improvement in power conversion efficiency. Surface-sensitive characterizations indicate the presence of a thin, conformally deposited AlOx layer, functioning as a passivating contact. These interlayers work universally using different lead-halide-based absorbers with different compositions where the 1.55 electron volts bandgap single junction devices reach >23% power conversion efficiency. A reduction of metallic Pb-0 is found and the compact layer prevents in- and egress of volatile species, synergistically improving the stability. AlOX-modified wide-bandgap perovskite absorbers as a top cell in a monolithic perovskite-silicon tandem enable a certified power conversion efficiency of 29.9% and open-circuit voltages above 1.92 volts for 1.17 square centimeters device area.

Advanced Materials

2024-02-19

DOI : 10.1002/adma.202311745

Search for resonances in events with photon and jet final states in proton-proton collisions at √s=13 TeV

A. Tumasyan; W. Adam; J. W. Andrejkovic; T. Bergauer; S. Chatterjee et al. 

A search for resonances in events with the gamma+jet final state has been performed using proton-proton collision data collected at root s = 13 TeV by the CMS experiment at the LHC. The total data analyzed correspond to an integrated luminosity of 138 fb(-1). Models of excited quarks and quantum black holes are considered. Using a wide-jet reconstruction for the candidate jet, the gamma +jet invariant mass spectrum measured in data is examined for the presence of resonances over the standard model continuum background. The background is estimated by fitting this mass distribution with a functional form. The data exhibit no statistically significant deviations from the expected standard model background. Exclusion limits at 95% confidence level on the resonance mass and other parameters are set. Excited light-flavor quarks (excited bottom quarks) are excluded up to a mass of 6.0 (3.8) TeV. Quantum black hole production is excluded for masses up to 7.5 (5.2) TeV in the ArkaniHamed-Dimopoulos-Dvali (Randall-Sundrum) model. These lower mass bounds are the most stringent to date among those obtained in the gamma +jet final state.

Journal Of High Energy Physics

2023-12-28

num. 12, p. 189.

DOI : 10.1007/JHEP12(2023)189

Demonstration of particle tracking with scintillating fibres read out by a SPAD array sensor and application as a neutrino active target

M. Franks; T. Dieminger; K. Kaneyasu; D. Sgalaberna; C. Bruschini et al. 

Scintillating fibre detectors combine sub-mm resolution particle tracking, precise measurements of the particle stopping power and sub-ns time resolution. Typically, fibres are read out with silicon photomultipliers (SiPM). Hence, if fibres with a few hundred mu\documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} \usepackage{upgreek} \setlength{\oddsidemargin}{-69pt} \begin{document}$$\upmu $$\end{document}m diameter are used, either they are grouped together and coupled with a single SiPM, losing spatial resolution, or a very large number of electronic channels is required. In this article we propose and provide a first demonstration of a novel configuration which allows each individual scintillating fibre to be read out regardless of the size of its diameter, by imaging them with Single-Photon Avalanche Diode (SPAD) array sensors. Differently from SiPMs, SPAD array sensors provide single-photon detection with single-pixel spatial resolution. In addition, O(us) or faster coincidence of detected photons allows to obtain noise-free images. Such a concept can be particularly advantageous if adopted as a neutrino active target, where scintillating fibres alternated along orthogonal directions can provide isotropic, high-resolution tracking in a dense material and reconstruct the kinematics of low-momentum protons (down to 150 MeV/c), crucial for an accurate characterisation of the neutrino-nucleus cross section. In this work the tracking capabilities of a bundle of scintillating fibres coupled to SwissSPAD2 is demonstrated. The impact of such detector configuration in GeV-neutrino experiments is studied with simulations and reported. Finally, future plans, including the development of a new SPAD array sensor optimised for neutrino detection, are discussed.

European Physical Journal C

2024-02-27

Vol. 84 , num. 2, p. 202.

DOI : 10.1140/epjc/s10052-024-12509-y

Differentially private multi-agent constraint optimization

S. Damle; A. Triastcyn; B. Faltings; S. Gujar 

Distributed constraint optimization (DCOP) is a framework in which multiple agents with private constraints (or preferences) cooperate to achieve a common goal optimally. DCOPs are applicable in several multi-agent coordination/allocation problems, such as vehicle routing, radio frequency assignments, and distributed scheduling of meetings. However, optimization scenarios may involve multiple agents wanting to protect their preferences’ privacy. Researchers propose privacy-preserving algorithms for DCOPs that provide improved privacy protection through cryptographic primitives such as partial homomorphic encryption, secret-sharing, and secure multiparty computation. These privacy benefits come at the expense of high computational complexity. Moreover, such an approach does not constitute a rigorous privacy guarantee for optimization outcomes, as the result of the computation may compromise agents’ preferences. In this work, we show how to achieve privacy, specifically Differential Privacy, by randomizing the solving process. In particular, we present P-Gibbs, which adapts the current state-of-the-art algorithm for DCOPs, namely SD-Gibbs, to obtain differential privacy guarantees with much higher computational efficiency. Experiments on benchmark problems such as Ising, graph-coloring, and meeting-scheduling show P-Gibbs’ privacy and performance trade-off for varying privacy budgets and the SD-Gibbs algorithm. More concretely, we empirically show that P-Gibbs provides fair solutions for competitive privacy budgets.

Autonomous Agents And Multi-Agent Systems

2024-06-01

Vol. 38 , num. 1, p. 8.

DOI : 10.1007/s10458-024-09636-x

Mg-incorporated sorbent for efficient removal of trace CO from H2 gas

G. Bang; S. Jin; H. Kim; K-M. Kim; C-H. Lee 

Removal of trace CO impurities is an essential step in the utilization of Hydrogen as a clean energy source. While various solutions are currently employed to address this challenge, there is an urgent need to improve their efficiency. Here, we show that a bead-structured Mg, Cu, and Ce-based sorbent, Mg13CuCeOx, demonstrates superior removal capacity of trace CO from H2 with high stability. The incorporation of Mg boosts sorption performance by enhancing the porous structure and Cu+ surface area. Remarkably, compared to existing pelletized sorbents, Mg(13)CuCeO(x )exhibits 15.5 to 50 times greater equilibrium capacity under pressures below 10 Pa CO and 31 times longer breakthrough time in removing 50 ppm CO in H-2. Energy-efficient oxidative regeneration using air at 120 C-degrees allows its stable sorption performance over 20 cycles. Through in-situ DRIFTS analysis, we elucidate the reaction mechanism that Mg augments the surface OH groups, promoting the formation of bicarbonate and formate species. This study highlights the potential of MgCuCeO(x )sorbents in advancing the hydrogen economy by effectively removing trace CO from H-2.

Nature Communications

2023-11-03

Vol. 14 , num. 1, p. 7045.

DOI : 10.1038/s41467-023-42871-6

An area efficient inductorless super-regenerative receiver front-end for biomedical implant devices

N. Pekcokguler; G. Dundar; C. Dehollain 

Wearable and implantable medical devices are of great importance in diagnosis and treatment as they provide continuous monitoring and data collection. Considering the comfort of the patient and ease-of-operation, these devices require wireless data transmission. In this work, a novel area and energy efficient inductorless superregenerative receiver (SRR) is proposed for medical implants dedicated to patient monitoring and treatment. The proposed SRR was fabricated in UMC CMOS 180 nm technology. The SRR occupies only 0.072 mm2 which corresponds to an order of magnitude area reduction compared to the state -of -the -art. The SRR achieves -70 dBm sensitivity and the highest data rate is 4 Mbps. 3.22 nJ/b energy efficiency is obtained with 12.9 mW power consumption from a 1.8 V power supply.

Aeu-International Journal Of Electronics And Communications

2024-01-18

Vol. 176 , p. 155128.

DOI : 10.1016/j.aeue.2024.155128

Element- and enantiomer-selective visualization of molecular motion in real-time

R. Mincigrucci; J. R. Rouxel; B. Rossi; E. Principi; C. Bottari et al. 

Ultrafast optical-domain spectroscopies allow to monitor in real time the motion of nuclei in molecules. Achieving element-selectivity had to await the advent of time resolved X-ray spectroscopy, which is now commonly carried at X-ray free electron lasers. However, detecting light element that are commonly encountered in organic molecules, remained elusive due to the need to work under vacuum. Here, we present an impulsive stimulated Raman scattering (ISRS) pump/carbon K-edge absorption probe investigation, which allowed observation of the low-frequency vibrational modes involving specific selected carbon atoms in the Ibuprofen RS dimer. Remarkably, by controlling the probe light polarization we can preferentially access the enantiomer of the dimer to which the carbon atoms belong.

Nature Communications

2023-01-24

Vol. 14 , num. 1, p. 386.

DOI : 10.1038/s41467-023-36047-5

The ABCD of topological recursion

J. E. Andersen; G. Borot; L. O. Chekhov; N. G. Orantin 

Kontsevich and Soibelman reformulated and slightly generalised the topological recursion of [43], seeing it as a quantisation of certain quadratic Lagrangians in T*V for some vector space V. KS topological recursion is a procedure which takes as initial data a quantum Airy structure – a family of at most quadratic differential operators on V satisfying some axioms – and gives as outcome a formal series of functions on V (the partition function) simultaneously annihilated by these operators. Finding and classifying quantum Airy structures modulo the gauge group action, is by itself an interesting problem which we study here. We provide some elementary, Lie-algebraic tools to address this problem, and give some elements of the classification for dim V = 2. We also describe four more interesting classes of quantum Airy structures, coming from respectively Frobenius algebras (here we retrieve the 2d TQFT partition function as a special case), non -commutative Frobenius algebras, loop spaces of Frobenius algebras and a Z2 -invariant version of the latter. This Z2 -invariant version in the case of a semi -simple Frobenius algebra corresponds to the topological recursion of [43]. (c) 2023 Elsevier Inc. All rights reserved.

Advances In Mathematics

2024-01-24

Vol. 439 , p. 109473.

DOI : 10.1016/j.aim.2023.109473

Applicability of the ITER-like EC HVPS design to the DEMO ECS

D. Fasel; J. Dubray; A. Ferro; T. Franke; E. Gaio et al. 

Fusion Engineering And Design

2024-01-19

Vol. 200 , p. 114150.

DOI : 10.1016/j.fusengdes.2024.114150

Increased functional connectivity in the right dorsal auditory stream after a full year of piano training in healthy older adults

K. Juenemann; A. Engels; D. Marie; F. Worschech; D. S. Scholz et al. 

Learning to play an instrument at an advanced age may help to counteract or slow down age-related cognitive decline. However, studies investigating the neural underpinnings of these effects are still scarce. One way to investigate the effects of brain plasticity is using resting-state functional connectivity (FC). The current study compared the effects of learning to play the piano (PP) against participating in music listening/musical culture (MC) lessons on FC in 109 healthy older adults. Participants underwent resting-state functional magnetic resonance imaging at three time points: at baseline, and after 6 and 12 months of interventions. Analyses revealed piano training-specific FC changes after 12 months of training. These include FC increase between right Heschl’s gyrus (HG), and other right dorsal auditory stream regions. In addition, PP showed an increased anticorrelation between right HG and dorsal posterior cingulate cortex and FC increase between the right motor hand area and a bilateral network of predominantly motor-related brain regions, which positively correlated with fine motor dexterity improvements. We suggest to interpret those results as increased network efficiency for auditory-motor integration. The fact that functional neuroplasticity can be induced by piano training in healthy older adults opens new pathways to countervail age related decline.

Scientific Reports

2023-11-15

Vol. 13 , num. 1, p. 19993.

DOI : 10.1038/s41598-023-46513-1

Educational Soft Underwater Robot with an Electromagnetic Actuation

R. M. Hennig; A. Beaudette; H. M. Golecki; C. J. Walsh 

As demonstrated by the Soft Robotics Toolkit Platform, compliant robotics pose an exciting educational opportunity. Underwater robotics using soft undulating fins is an expansive research topic with applications such as exploration of underwater life or replicating 3d swarm behavior. To make this research area accessible for education we developed Educational Soft Underwater Robot with Electromagnetic Actuation (ESURMA), a humanoid soft underwater robot. We achieved advances in simplicity, modularity, and performance by implementing electromagnetic actuation into the caudal fin. An electromagnet, including electronics, is placed in a waterproof housing, and permanent magnets are embedded in a soft silicone cast tail. The force from their magnetic interaction results in a bending movement of the tail. The magnetic actuation is simple to implement and requires no mechanical connection between the actuated component and the electrically controlled coil. This enables robust waterproofing and makes the device fully modular. Thanks to the direct and immediate transmission of force, experimental flapping frequencies of 14Hz were achieved, an order of magnitude higher compared to pneumatically actuated tails. The completely silent actuation of the caudal fin enables a maximum swimming speed of 14.3cm/s. With its humanoid shape, modular composition, and cost efficiency ESURMA represents an attractive platform for education and demonstrates an alternative method of actuating soft structures.

Soft Robotics

2024-01-24

DOI : 10.1089/soro.2021.0181

Quench Detection and Temperature Measurement With Fiber Optic Sensors

H. Bajas; D. Uglietti; C. Muller; K. Sedlak 

For the EU DEMO conductor testing, a temperature sensor based on Fiber Bragg Grating (FBG) optical fiber is studied at the EPFL Swiss Plasma Center. The SULTAN test facility has been upgraded to use fiber optic sensor for temperature monitoring and quench detection. Up to four optical fibers can be interrogated simultaneously (eight fibers separately). In order to qualify the system and improve fiber integration in complex superconducting structure, one 2.6 m-long REBCO conductor of a SULTAN sample has been instrumented with FBG sensors. Two fibers, each containing ten FBG sensors along their length and separated by 60 mm, are installed within the conductor. The first fiber is soldered together with the REBCO tapes and thus subjected to the thermal strain of the whole conductor. The second fiber is inserted inside a stainless steel capillary tube that insures strain free condition to the FBG sensor. A 4-FBG sensors fiber is also placed at the outer surface of the stainless steel jacket in correspondence with CERNOX sensors. The procedure for fiber routing and protection is described. In a separated experiment in a small cryostat, different coating materials are studied and used to calibrate the FBGs response from room temperature to 4.5 K over several cycles.

Ieee Transactions On Applied Superconductivity

2024-08-01

Vol. 34 , num. 5, p. 9001005.

DOI : 10.1109/TASC.2023.3346855

Fault roughness controls injection-induced seismicity

L. Wang; G. Kwiatek; F. Renard; S. Guerin-Marthe; E. Rybacki et al. 

Surface roughness ubiquitously prevails in natural faults across various length scales. Despite extensive studies highlighting the important role of fault geometry in the dynamics of tectonic earthquakes, whether and how fault roughness affects fluid-induced seismicity remains elusive. Here, we investigate the effects of fault geometry and stress heterogeneity on fluid-induced fault slip and associated seismicity characteristics using laboratory experiments and numerical modeling. We perform fluid injection experiments on quartz-rich sandstone samples containing either a smooth or a rough fault. We find that geometrical roughness slows down injection-induced fault slip and reduces macroscopic slip velocities and fault slip-weakening rates. Stress heterogeneity and roughness control hypocenter distribution, frequency-magnitude characteristics, and source mechanisms of injection-induced acoustic emissions (AEs) (analogous to natural seismicity). In contrast to smooth faults where injection-induced AEs are uniformly distributed, slip on rough faults produces spatially localized AEs with pronounced non-double-couple source mechanisms. We demonstrate that these clustered AEs occur around highly stressed asperities where induced local slip rates are higher, accompanied by lower Gutenberg-Richter b-values. Our findings suggest that real-time monitoring of induced microseismicity during fluid injection may allow identifying progressive localization of seismic activity and improve forecasting of runaway events

Proceedings Of The National Academy Of Sciences Of The United States Of America

2024-01-16

Vol. 121 , num. 3, p. e2310039121.

DOI : 10.1073/pnas.2310039121

PSYCHOSOCIAL EXPERIENCES AND THE MITOCHONDRIAL BRAIN PROTEOME IN OLDER ADULTS

C. Trumpff; H-U. Klein; C. Sandi; V. Petyukd; N. Seyfried et al. 

Psychosomatic Medicine

2023-05-01

p. A118-A118

Reducing Annotation Efforts in Electricity Theft Detection Through Optimal Sample Selection

W. Liao; B. Bak-Jensen; J. R. Pillai; X. Xia; G. Ruan et al. 

Supervised machine learning models are receiving increasing attention in electricity theft detection due to their high detection accuracy. However, their performance depends on a massive amount of labeled training data, which comes from time-consuming and resource-intensive annotations. To maximize model performance within a limited annotation budget, this article aims to reduce the annotation effort in electricity theft detection through optimal sample selection. In particular, a general framework and three new strategies are proposed to select the most valuable and representative samples from different perspectives, including uncertainty, class imbalance, and diversity of samples. In-depth simulations and analyses are conducted to evaluate the effectiveness of the proposed strategies on commonly used machine learning models and a real-world dataset. Simulation results show that the proposed strategies significantly outperform baselines on datasets of different sizes and fraudulent ratios. Besides, the proposed strategies are effective in improving detection performance across a range of classifiers.

Ieee Transactions On Instrumentation And Measurement

2024-01-01

Vol. 73 , p. 3508911.

DOI : 10.1109/TIM.2024.3352696

Power Aware Placement of On-Chip Voltage Regulators

R. Bairamkulov; E. G. Friedman 

In traditional power delivery networks, the on-chip supply voltage is provided by board-level converters. Due to the significant distance between the converter and the load, variations in the load current are not effectively managed, producing a significant voltage drop at the point-of-load. To mitigate this issue, modern high-performance systems utilize on-chip voltage regulators. Due to the close proximity to the load, these regulators can quickly respond to fluctuations in the input voltage or load current, providing superior power quality. Integrated voltage regulators however require significant area, limiting the number of on-chip regulators. An algorithm for distributing on-chip voltage regulators is presented in this article. The algorithm is accelerated using the acrlong IMT, enabling the analysis of arbitrarily sized power grids. The power quality is maximized with a limited number of regulators. Practical scenarios are supported, such as limited current capacity and restricted placement. Several orders of magnitude speedup in the placement process is demonstrated while achieving up to 88% reduction in the maximum voltage drop.

Ieee Transactions On Computer-Aided Design Of Integrated Circuits And Systems

2024-02-01

Vol. 43 , num. 2, p. 654-666.

DOI : 10.1109/TCAD.2023.3319285

Disentangling Thermal from Electronic Contributions in the Spectral Response of Photoexcited Perovskite Materials

L. Wang; R. Nughays; T. C. H. Rossi; M. Oppermann; W. Ogieglo et al. 

Disentangling electronic and thermal effects in photoexcited perovskite materials is crucial for photovoltaic and optoelectronic applications but remains a challenge due to their intertwined nature in both the time and energy domains. In this study, we employed temperature-dependent variable-angle spectroscopic ellipsometry, density functional theory calculations, and broadband transient absorption spectroscopy spanning the visible to mid-to-deep-ultraviolet (UV) ranges on MAPbBr(3) thin films. The use of deep-UV detection opens a new spectral window that enables the exploration of high-energy excitations at various symmetry points within the Brillouin zone, facilitating an understanding of the ultrafast responses of the UV bands and the underlying mechanisms governing them. Our investigation reveals that the photoinduced spectral features remarkably resemble those generated by pure lattice heating, and we disentangle the relative thermal and electronic contributions and their evolutions at different delay times using combinations of decay-associated spectra and temperature-induced differential absorption. The results demonstrate that the photoinduced transients possess a significant thermal origin and cannot be attributed solely to electronic effects. Following photoexcitation, as carriers (electrons and holes) transfer their energy to the lattice, the thermal contribution increases from similar to 15% at 1 ps to similar to 55% at 500 ps and subsequently decreases to similar to 35-50% at 1 ns. These findings elucidate the intricate energy exchange between charge carriers and the lattice in photoexcited perovskite materials and provide insights into the limited utilization efficiency of photogenerated charge carriers.

Journal Of The American Chemical Society

2024-02-15

Vol. 146 , num. 8, p. 5393-5401.

DOI : 10.1021/jacs.3c12832

Peak Value-at-Risk Estimation for Stochastic Differential Equations using Occupation Measures

J. Miller; M. R. Tacchi; M. Sznaier; A. Jasour 

This paper proposes an algorithm to upper-bound maximal quantile statistics of a state function over the course of a Stochastic Differential Equation (SDE) system execution. This chance-peak problem is posed as a nonconvex program aiming to maximize the Value-at-Risk (VaR) of a state function along SDE state distributions. The VaR problem is upper-bounded by an infinite-dimensional Second-Order Cone Program in occupation measures through the use of one-sided Cantelli or Vysochanskii-Petunin inequalities. These upper bounds on the true quantile statistics may be approximated from above by a sequence of Semidefinite Programs in increasing size using the moment-Sum-of-Squares hierarchy when all data is polynomial. Effectiveness of this approach is demonstrated on example stochastic polynomial dynamical systems.

2023 62Nd Ieee Conference On Decision And Control, Cdc

2023-01-01

62nd IEEE Conference on Decision and Control (CDC), Singapore, SINGAPORE, DEC 13-15, 2023.

p. 4836-4842

DOI : 10.1109/CDC49753.2023.10383958

Hypergraph-Based Fast Distributed AC Power Flow Optimization

X. Dai; Y. Lian; Y. Jiang; C. N. Jones; V. Hagenmeyer 

This paper presents a novel distributed approach for solving AC power flow (PF) problems. The optimization problem is reformulated into a distributed form using a communication structure corresponding to a hypergraph, by which complex relationships between subgrids can be expressed as hyperedges. Then, a hypergraph-based distributed sequential quadratic programming (HDSQP) approach is proposed to handle the reformulated problems, and the hypergraph-based distributed quadratic optimization algorithm (HDQ) is used as the inner algorithm to solve the corresponding QP subproblems, which are respectively condensed using Schur complements with respect to coupling variables defined by hyperedges. Furthermore, we rigorously establish the convergence guarantee of the proposed algorithm with a locally quadratic rate and the one-step convergence of the inner algorithm when using the Levenberg-Marquardt regularization. Our analysis also demonstrates that the computational complexity of the proposed algorithm is much lower than the state-of-art distributed algorithm. We implement the proposed algorithm in an open-source toolbox, rapidPF(1), and conduct numerical tests that validate the proof and demonstrate the great potential of the proposed distributed algorithm in terms of communication effort and computational speed.

2023 62Nd Ieee Conference On Decision And Control, Cdc

2023-01-01

62nd IEEE Conference on Decision and Control (CDC), Singapore, SINGAPORE, DEC 13-15, 2023.

p. 4572-4579

DOI : 10.1109/CDC49753.2023.10383354

Primal-Dual Contextual Bayesian Optimization for Control System Online Optimization with Time-Average Constraints

W. Xu; Y. Jiang; B. Svetozarevic; C. N. Jones 

This paper studies the problem of online performance optimization of constrained closed-loop control systems, where both the objective and the constraints are unknown black-box functions affected by exogenous time-varying contextual disturbances. A primal-dual contextual Bayesian optimization algorithm is proposed that achieves sublinear cumulative regret with respect to the dynamic optimal solution under certain regularity conditions. Furthermore, the algorithm achieves zero time-average constraint violation, ensuring that the average value of the constraint function satisfies the desired constraint. The method is applied to both sampled instances from Gaussian processes and a continuous stirred tank reactor parameter tuning problem; simulation results show that the method simultaneously provides close-to-optimal performance and maintains constraint feasibility on average. This contrasts current state-of-the-art methods, which either suffer from large cumulative regret or severe constraint violations for the case studies presented.

2023 62Nd Ieee Conference On Decision And Control, Cdc

2023-01-01

62nd IEEE Conference on Decision and Control (CDC), Singapore, SINGAPORE, DEC 13-15, 2023.

p. 4112-4117

DOI : 10.1109/CDC49753.2023.10383653

Model Predictive Control for Multi-Agent Systems under Limited Communication and Time-Varying Network Topology

D. Saccani; L. Fagiano; M. N. Zeilinger; A. Carron 

In control system networks, reconfiguration of the controller when agents are leaving or joining the network is still an open challenge, in particular when operation constraints that depend on each agent’s behavior must be met. Drawing our motivation from mobile robot swarms, in this paper, we address this problem by optimizing individual agent performance while guaranteeing persistent constraint satisfaction in presence of bounded communication range and time-varying network topology. The approach we propose is a model predictive control (MPC) formulation, building on multi-trajectory MPC (mt-MPC) concepts. To enable plug and play operations when the system is in closed-loop without the need of a request, the proposed MPC scheme predicts two different state trajectories in the same finite horizon optimal control problem. One trajectory drives the system to the desired target, assuming that the network topology will not change in the prediction horizon, while the second one ensures constraint satisfaction assuming a worst-case scenario in terms of new agents joining the network in the planning horizon. Recursive feasibility and stability of the closed-loop system during plug and play operations are shown. The approach effectiveness is illustrated with a numerical simulation.

2023 62Nd Ieee Conference On Decision And Control, Cdc

2023-01-01

62nd IEEE Conference on Decision and Control (CDC), Singapore, SINGAPORE, DEC 13-15, 2023.

p. 3764-3769

DOI : 10.1109/CDC49753.2023.10383790

Learning How to Price Charging in Electric Ride-Hailing Markets

M. Maljkovic; G. Nilsson; N. Geroliminis 

With the electrification of ride-hailing fleets, there will be a need to incentivize where and when the ride-hailing vehicles should charge. In this work, we assume that a central authority wants to control the distribution of the vehicles and can do so by selecting charging prices. Since there will likely be more than one ride-hailing company in the market, we model the problem as a single-leader multiple-follower Stackelberg game. The followers, i.e., the companies, compete about the charging resources under given prices provided by the leader. We present a learning algorithm based on the concept of contextual bandits that allows the central authority to find an efficient pricing strategy. We also show how the exploratory phase of the learning can be improved if the leader has some partial knowledge about the companies’ objective functions. The efficiency of the proposed algorithm is demonstrated in a simulated case study for the city of Shenzhen, China.

2023 62Nd Ieee Conference On Decision And Control, Cdc

2023-01-01

62nd IEEE Conference on Decision and Control (CDC), Singapore, SINGAPORE, DEC 13-15, 2023.

p. 3136-3141

DOI : 10.1109/CDC49753.2023.10383750

Routing and charging game in ride-hailing service with electric vehicles

K. Zhang; J. Lygeros 

This paper studies the routing and charging behaviors of electric vehicles in a competitive ride-hailing market. When the vehicles are idle, they can choose whether to continue cruising to search for passengers, or move a charging station to recharge. The behaviors of individual vehicles are then modeled by a Markov decision process (MDP). The state transitions in the MDP model, however, depend on the aggregate vehicle flows both in service zones and at charging stations. Accordingly, the value function of each vehicle is determined by the collective behaviors of all vehicles. With the assumption of the large population, we formulate the collective routing and charging behaviors as a mean-field Markov game. We characterize the equilibrium of such a game, prove its existence, and numerically show that the competition among vehicles leads to “inefficient congestion” both in service zones and at charging stations.

2023 62Nd Ieee Conference On Decision And Control, Cdc

2023-01-01

62nd IEEE Conference on Decision and Control (CDC), Singapore, SINGAPORE, DEC 13-15, 2023.

p. 3116-3121

Unconstrained Parametrization of Dissipative and Contracting Neural Ordinary Differential Equations

D. Martinelli; C. L. Galimberti; I. R. Manchester; L. Furieri; G. Ferrari-Trecate 

In this work, we introduce and study a class of Deep Neural Networks (DNNs) in continuous-time. The proposed architecture stems from the combination of Neural Ordinary Differential Equations (Neural ODEs) with the model structure of recently introduced Recurrent Equilibrium Networks (RENs). We show how to endow our proposed NodeRENs with contractivity and dissipativity – crucial properties for robust learning and control. Most importantly, as for RENs, we derive parametrizations of contractive and dissipative NodeRENs which are unconstrained, hence enabling their learning for a large number of parameters. We validate the properties of NodeRENs, including the possibility of handling irregularly sampled data, in a case study in nonlinear system identification.

2023 62Nd Ieee Conference On Decision And Control, Cdc

2023-01-01

62nd IEEE Conference on Decision and Control (CDC), Singapore, SINGAPORE, DEC 13-15, 2023.

p. 3043-3048

PIQP: A Proximal Interior-Point Quadratic Programming Solver

R. Schwan; Y. Jiang; D. Kuhn; C. N. Jones 

This paper presents PIQP, a high-performance toolkit for solving generic sparse quadratic programs (QP). Combining an infeasible Interior Point Method (IPM) with the Proximal Method of Multipliers (PMM), the algorithm can handle ill-conditioned convex QP problems without the need for linear independence of the constraints. The open-source implementation is written in C++ with interfaces to C, Python, Matlab, and R leveraging the Eigen3 library. The method uses a pivoting-free factorization routine and allocation-free updates of the problem data, making the solver suitable for embedded applications. The solver is evaluated on the Maros-Meszaros problem set and optimal control problems, demonstrating state-of-the-art performance for both small and large-scale problems, outperforming commercial and open-source solvers.

2023 62Nd Ieee Conference On Decision And Control, Cdc

2023-01-01

62nd IEEE Conference on Decision and Control (CDC), Singapore, SINGAPORE, DEC 13-15, 2023.

p. 1088-1093

DOI : 10.1109/CDC49753.2023.10383915

Safe Zeroth-Order Optimization Using Linear Programs

B. Guo; Y. Wang; Y. Jiang; M. Kamgarpour; G. Ferrari-Trecate 

To solve unmodeled optimization problems with hard constraints, this paper proposes a novel zeroth-order approach called Safe Zeroth-order Optimization using Linear Programs (SZO-LP). The SZO-LP method solves a linear program in each iteration to find a descent direction, followed by a step length determination. We prove that, under mild conditions, the iterates of SZO-LP have an accumulation point that is also the primal of a KKT pair. We then apply SZO-LP to solve an Optimal Power Flow (OPF) problem on the IEEE 30-bus system. The results demonstrate that SZO-LP requires less computation time and samples compared to state-of-the-art approaches.

2023 62Nd Ieee Conference On Decision And Control, Cdc

2023-01-01

62nd IEEE Conference on Decision and Control (CDC), Singapore, SINGAPORE, DEC 13-15, 2023.

p. 556-561

Soft Robot Shape Estimation With IMUs Leveraging PCC Kinematics for Drift Filtering

F. Stella; C. Della Santina; J. Hughes 

The control possibilities for soft robots have long been hindered by the need for reliable methods to estimate their configuration. Inertial measurement units (IMUs) can solve this challenge, but they are affected by well-known drift issues. This letter proposes a method to eliminate this limitation by leveraging the Piecewise Constant Curvature model assumption. We validate the reconstruction capabilities of the algorithm in simulation and experimentally. To this end, we also present a novel large-scale, foam-based manipulator with embedded IMU sensors. Using the filter, we bring the accuracy in IMU-based reconstruction algorithms to 93% of the soft robot’s length and enable substantially longer measurements than the baseline. We also show that the proposed technique generates reliable estimations for closed-loop control of the robot’s shape.

Ieee Robotics And Automation Letters

2024-02-01

Vol. 9 , num. 2, p. 1945-1952.

DOI : 10.1109/LRA.2023.3339063

Proton reconstruction with the CMS-TOTEM Precision Proton Spectrometer

A. Tumasyan; W. Adam; J. W. Andrejkovic; T. Bergauer; S. Chatterjee et al. 

The Precision Proton Spectrometer (PPS) of the CMS and TOTEM experiments collected 107.7 fb 1 in proton-proton (pp) collisions at the LHC at 13 TeV(Run 2). This paper describes the key features of the PPS alignment and optics calibrations, the proton reconstruction procedure, as well as the detector efficiency and the performance of the PPS simulation. The reconstruction and simulation are validated using a sample of (semi)exclusive dilepton events. The performance of PPS has proven the feasibility of continuously operating a near-beam proton spectrometer at a high luminosity hadron collider.

Journal Of Instrumentation

2023-09-01

Vol. 18 , num. 9.

DOI : 10.1088/1748-0221/18/09/P09009

Sparse Attacks for Manipulating Explanations in Deep Neural Network Models

A. Ajalloeian; S. M. Moosavi-Dezfooli; M. Vlachos; P. Frossard 

We investigate methods for manipulating classifier explanations while keeping the predictions unchanged. Our focus is on using a sparse attack, which seeks to alter only a minimal number of input features. We present an efficient and novel algorithm for computing sparse perturbations that alter the explanations but keep the predictions unaffected. We demonstrate that our algorithm, compared to PGD attacks with if constraint l(0), generates sparser perturbations while resulting in greater discrepancies between original and manipulated explanations. Moreover, we demonstrate that it is also possible to conceal the attribution of the k most significant features in the original explanation by perturbing fewer than k features of the input data. We present results for both image and tabular datasets, and emphasize the significance of sparse perturbation based attacks for trustworthy model building in high-stakes applications. Our research reveals important vulnerabilities in explanation methods that should be taken into account when developing reliable explanation methods. Code can be found at ht t ps://github.com/ahmadajal/sparse_expl_attacks

23Rd Ieee International Conference On Data Mining, Icdm 2023

2023-01-01

23rd IEEE International Conference on Data Mining (IEEE ICDM), Shanghai, PEOPLES R CHINA, DEC 01-04, 2023.

p. 918-923

DOI : 10.1109/ICDM58522.2023.00101

Void BAO measurements on quasars from eBOSS

A. Tamone; C. Zhao; D. Forero-Sanchez; A. Variu; C-H. Chuang et al. 

We present the clustering of voids based on the quasar (QSO) sample of the extended Baryon Oscillation Spectroscopic Survey Data Release 16 in configuration space. We define voids as overlapping empty circumspheres computed by Delaunay tetrahedra spanned by quartets of quasars, allowing for an estimate of the depth of underdense regions. To maximize the baryon acoustic oscillation (BAO) signal-to-noise ratio, we consider only voids with radii larger than 36h(-1)Mpc. Our analysis shows a negative BAO peak in the cross-correlation of QSOs and voids. The joint BAO measurement of the QSO autocorrelation and the corresponding cross-correlation with voids shows an improvement in 70 per cent of the QSO mocks with an average improvement of similar to 5 percent. However, on the SDSS data, we find no improvement compatible with cosmic variance. For both mocks and data, adding voids does not introduce any bias. We find under the flat Lambda CDM assumption, a distance joint measurement on data at the effective redshift z(eff )= 1.51 of D-V(z(eff)) = 26.558 +/- 0.553. A forecast of a DESI-like survey with 1000 boxes with a similar effective volume recovers the same results as for light-cone mocks with an average of 4.8 per cent improvement in 68 per cent of the boxes.

Monthly Notices Of The Royal Astronomical Society

2023-09-29

Vol. 526 , num. 2, p. 2889-2902.

DOI : 10.1093/mnras/stad2898

Phosphoproteomics and morphology of stored human red blood cells treated by protein tyrosine phosphatases inhibitor

M. Bardyn; D. Crettaz; B. Rappaz; R. Hamelin; F. Armand et al. 

The process of protein phosphorylation is involved in numerous cell functions. In particular, phosphotyrosine (pY) has been reported to play a role in red blood cell (RBC) functions, including the cytoskeleton organization. During their storage before transfusion, RBCs suffer from storage lesions that affect their energy metabolism and morphology. This study investigated the relationship between pY and the storage lesions. To do so, RBCs were treated (in the absence of calcium) with a protein tyrosine phosphatase inhibitor (orthovanadate [OV]) to stimulate phosphorylation and with 3 selective kinase inhibitors (KIs). Erythrocyte membrane proteins were studied by western blot analyses and phosphoproteomics (data are available via ProteomeXchange with identifier PXD039914) and cell morphology by digital holographic microscopy. The increase of pY triggered by OV treatment (inducing a global downregulation of pS and pT) disappeared during the storage. Phosphoproteomic analysis identified 609 phosphoproteins containing 1752 phosphosites, of which 41 pY were upregulated and 2 downregulated by OV. After these phosphorylation processes, the shape of RBCs shifted from discocytes to spherocytes, and the addition of KIs partially inhibited this transition. The KIs modulated either pY or pS and pT via diverse mechanisms related to cell shape, thereby affecting RBC morphology. The capacity of RBCs to maintain their function is central in transfusion medicine, and the presented results contribute to a better understanding of RBC biology.

Blood Advances

2023-12-29

Vol. 8 , num. 1, p. 1-13.

DOI : 10.1182/bloodadvances.2023009964

The Halos and Environments of Nearby Galaxies (HERON) survey IV. Complexity in the boxy galaxies NGC720 and NGC2768

A. J. Koch-Hansen; A. Pasquali; R. M. Rich; O. Gerhard; O. Mueller 

The shapes of galaxies, their outer regions in particular, are important guideposts to their formation and evolution. In this work, we report on the discovery of strongly box-shaped morphologies of the otherwise well-studied elliptical and lenticular galaxies NGC720 and NGC2768 from deep imaging. The boxiness is strongly manifested in the parameter shape A(4)/a of 0:04 in both objects, and significant center shifts of the isophotes of similar to 2-4 kpc are also seen. One reason for such asymmetries commonly stated in the literature is a merger origin, although the number of such cases is still sparse, and the exact properties of the individual boxy objects are highly diverse. Indeed, for NGC2768, we identify a progenitor candidate (dubbed “Pelops”) in the residual images, which appears to be a dwarf satellite that is currently merging with NGC 2768. At its absolute magnitude of M-r of -12.2 mag, the corresponding Sersic radius of 2.4 kpc is more extended than those of typical dwarf galaxies from the literature. However, systematically larger radii are known to occur in systems that are in tidal disruption. This finding is bolstered by the presence of a tentative tidal stream feature on archival GALEX data. Finally, further structures in the fascinating host galaxy include rich dust lanes and a vestigial X-shaped bulge component.

Astronomy & Astrophysics

2024-02-06

Vol. 682 , p. A95.

DOI : 10.1051/0004-6361/202347940

Structural heterogeneity of the ion and lipid channel TMEM16F

Z. Ye; N. Galvanetto; L. Puppulin; S. Pifferi; H. Flechsig et al. 

Transmembrane protein 16 F (TMEM16F) is a Ca2+-activated homodimer which functions as an ion channel and a phospholipid scramblase. Despite the availability of several TMEM16F cryogenic electron microscopy (cryo-EM) structures, the mechanism of activation and substrate translocation remains controversial, possibly due to restrictions in the accessible protein conformational space. In this study, we use atomic force microscopy under physiological conditions to reveal a range of structurally and mechanically diverse TMEM16F assemblies, characterized by variable inter-subunit dimerization interfaces and protomer orientations, which have escaped prior cryo-EM studies. Furthermore, we find that Ca2+-induced activation is associated to stepwise changes in the pore region that affect the mechanical properties of transmembrane helices TM3, TM4 and TM6. Our direct observation of membrane remodelling in response to Ca2+ binding along with additional electro-physiological analysis, relate this structural multiplicity of TMEM16F to lipid and ion permeation processes. These results thus demonstrate how conformational heterogeneity of TMEM16F directly contributes to its diverse physiological functions.

Nature Communications

2024-01-02

Vol. 15 , num. 1.

DOI : 10.1038/s41467-023-44377-7

BLACK-BOX ATTACKS ON IMAGE ACTIVITY PREDICTION AND ITS NATURAL LANGUAGE EXPLANATIONS

A. E. Baia; V. Poggioni; A. Cavallaro 

Explainable AI (XAI) methods aim to describe the decision process of deep neural networks. Early XAI methods produced visual explanations, whereas more recent techniques generate multimodal explanations that include textual information and visual representations. Visual XAI methods have been shown to be vulnerable to white-box and gray-box adversarial attacks, with an attacker having full or partial knowledge of and access to the target system. As the vulnerabilities of multimodal XAI models have not been examined, in this paper we assess for the first time the robustness to black-box attacks of the natural language explanations generated by a self-rationalizing image-based activity recognition model. We generate unrestricted, spatially variant perturbations that disrupt the association between the predictions and the corresponding explanations to mislead the model into generating unfaithful explanations. We show that we can create adversarial images that manipulate the explanations of an activity recognition model by having access only to its final output.

2023 Ieee/Cvf International Conference On Computer Vision Workshops, Iccvw

2023-01-01

IEEE/CVF International Conference on Computer Vision (ICCV), Paris, FRANCE, OCT 02-06, 2023.

p. 3688-3697

DOI : 10.1109/ICCVW60793.2023.00396

Diff3DHPE: A Diffusion Model for 3D Human Pose Estimation

J. Zhou; T. Zhang; Z. Hayder; L. Petersson; M. Harandi 

Accurately estimating 3D human pose (3D HPE) and joint locations using only 2D keypoints is challenging. The noise in the predictions produced by conventional 2D human pose estimators often impeded the accuracy. In this paper, we present a diffusion-based model for 3D pose estimation, named Diff3DHPE, inspired by diffusion models’ noise distillation abilities. The proposed model takes a temporal sequence of 2D keypoints as the input of a GNN backbone model to extract the 3D pose from Gaussian noise using a diffusion process during training. The model then refines it using a reverse diffusion process. To overcome over-smoothing issues in GNNs, Diff3DHPE is integrated with a discretized partial differential equation, which makes it a particular form of Graph Neural Diffusion (GRAND). Extensive experiments show that our model outperforms current state-of-the-art methods on two benchmark datasets, Human3.6M and MPI-INF-3DHP, achieving up to 39.1% improvement in MPJPE on MPI-INF-3DHP. The code is available at https://github.com/socoolzjm/Diff3DHPE.

2023 Ieee/Cvf International Conference On Computer Vision Workshops, Iccvw

2023-01-01

IEEE/CVF International Conference on Computer Vision (ICCV), Paris, FRANCE, OCT 02-06, 2023.

p. 2084-2094

DOI : 10.1109/ICCVW60793.2023.00223

Modeling Visual Impairments with Artificial Neural Networks: a Review

L. Schiatti; M. Gori; M. Schrimpf; G. Cappagli; F. Morelli et al. 

We present an approach to bridge the gap between the computational models of human vision and the clinical practice on visual impairments (VI). In a nutshell, we propose to connect advances in neuroscience and machine learning to study the impact of VI on key functional competencies and improve treatment strategies. We review related literature, with the goal of promoting the full exploitation of Artificial Neural Network (ANN) models in meeting the needs of visually impaired individuals and the operators working in the field of visual rehabilitation. We first summarize the existing types of visual issues, the key functional vision-related tasks, and the current methodologies used for the assessment of both. Second, we explore the ANNs best suitable to model visual issues and to predict their impact on functional vision-related tasks, at a behavioral (including performance and attention measures) and neural level. We provide guidelines to inform the future research about developing and deploying ANNs for clinical applications targeting individuals affected by VI.

2023 Ieee/Cvf International Conference On Computer Vision Workshops, Iccvw

2023-01-01

IEEE/CVF International Conference on Computer Vision (ICCV), Paris, FRANCE, OCT 02-06, 2023.

p. 1979-1991

DOI : 10.1109/ICCVW60793.2023.00213

Affordance segmentation of hand-occluded containers from exocentric images

T. Apicella; A. Xompero; E. Ragusa; R. Berta; A. Cavallaro et al. 

Visual affordance segmentation identifies the surfaces of an object an agent can interact with. Common challenges for the identification of affordances are the variety of the geometry and physical properties of these surfaces as well as occlusions. In this paper, we focus on occlusions of an object that is hand-held by a person manipulating it. To address this challenge, we propose an affordance segmentation model that uses auxiliary branches to process the object and hand regions separately. The proposed model learns affordance features under hand-occlusion by weighting the feature map through hand and object segmentation. To train the model, we annotated the visual affordances of an existing dataset with mixed-reality images of hand-held containers in third-person (exocentric) images. Experiments on both real and mixed-reality images show that our model achieves better affordance segmentation and generalisation than existing models.

2023 Ieee/Cvf International Conference On Computer Vision Workshops, Iccvw

2023-01-01

IEEE/CVF International Conference on Computer Vision (ICCV), Paris, FRANCE, OCT 02-06, 2023.

p. 1890-1899

DOI : 10.1109/ICCVW60793.2023.00204

Environmental effects on satellite galaxies from the perspective of cold gas

H. Chen; L. Xie; J. Wang; W. Hu; G. De Lucia et al. 

Environment plays a pivotal role in shaping the evolution of satellite galaxies. Analysing the properties related to the cold gas phase of satellites provides insights into unravelling the complexity of environmental effects. We use the hydro-dynamical simulations the IllustrisTNG project and the EAGLE simulations, and the semi-analytic models (SAMs) GAlaxy Evolution and Assembly (GAEA) and L-Galaxies, in comparison with recent observations from the Westerbork Synthesis Radio Telescope, to investigate the properties of satellite galaxies hosted by haloes with mass M-200 > 10(12.8) M-circle dot, and within projected regions <= 1.1 virial radius R-200. Generally, satellite galaxies selected from semi-analytic models have more HI than those selected from hydro-dynamical simulations across all projected radii, e.g. more than 30 percent of satellites in the two hydro-simulations are HI depleted, while this fraction is almost zero in SAMs. Furthermore, both hydro-dynamical simulations and SAMs reproduce the observed decrease of HI content and specific star formation rate towards the halo centre. However, the trend is steeper in two hydro-dynamical simulations TNG and EAGLE, resulting in a better agreement with the observational data, especially in more massive haloes. By comparing the two version of GAEA, we find that the inclusion of ram-pressure stripping of cold gas significantly improves the predictions on HI fractions. The refined hot gas stripping method employed in one of the two L-Galaxies models also yields improved results.

Monthly Notices Of The Royal Astronomical Society

2024-01-23

Vol. 528 , num. 2, p. 2451-2463.

DOI : 10.1093/mnras/stae162

Probing Small Bjorken-x Nuclear Gluonic Structure via Coherent J/ψ Photoproduction in Ultraperipheral Pb-Pb Collisions at √sNN=5.02 TeV

A. Tumasyan; W. Adam; J. W. Andrejkovic; T. Bergauer; S. Chatterjee et al. 

Quasireal photons exchanged in relativistic heavy ion interactions are powerful probes of the gluonic structure of nuclei. The coherent J/psi photoproduction cross section in ultraperipheral lead-lead collisions is measured as a function of photon-nucleus center-of-mass energies per nucleon (W-gamma N(Pb)) over a wide range of 40 < W-gamma N(Pb) < 400 GeV. Results are obtained using data at the nucleon-nucleon center-of-mass energy of 5.02 TeV collected by the CMS experiment at the CERN LHC, corresponding to an integrated luminosity of 1.52 nb(-1). The cross section is observed to rise rapidly at low WPb.N, and plateau above W-gamma N(Pb) approximate to 40 GeV, up to 400 GeV, entering a new regime of small Bjorken-x (approximate to 6 x 10(-5)) gluons being probed in a heavy nucleus. The observed energy dependence is not predicted by current quantum chromodynamic models.

Physical Review Letters

2023-12-28

Vol. 131 , num. 26, p. 262301.

DOI : 10.1103/PhysRevLett.131.262301

MoZuMa: A Model Zoo for Multimedia Applications

S. Massonnet; M. Romanelli; R. Lebret; N. J. Poulsen; K. Aberer 

Lots of machine learning models with applications in Multimedia Search are released as Open Source Software. However, integrating these models into an application is not always an easy task due to the lack of a consistent interface to run, train or distribute models. With MoZuMa, we aim at reducing this effort by providing a model zoo for image similarity, text-to-image retrieval, face recognition, object similarity search, video key-frames detection and multilingual text search implemented in a generic interface with a modular architecture. The code is released as Open Source Software at https://github.com/mozuma/mozuma.

Proceedings Of The 30Th Acm International Conference On Multimedia, Mm 2022

2022-01-01

30th ACM International Conference on Multimedia (MM), Lisboa, PORTUGAL, OCT 10-14, 2022.

p. 7335-7338

DOI : 10.1145/3503161.3548542

Unveiling breast cancer metastasis through an advanced X-ray imaging approach

A. L. C. Conceicao; V. Mueller; E-C. Burandt; M. Mohme; L. C. Nielsen et al. 

Breast cancer is a significant global health burden, causing a substantial number of deaths. Systemic metastatic tumour cell dissemination is a major cause of poor outcomes. Understanding the mechanisms underlying metastasis is crucial for effective interventions. Changes in the extracellular matrix play a pivotal role in breast cancer metastasis. In this work, we present an advanced multimodal X-ray computed tomography, by combining Small-angle X-ray Scattering Tensor Tomography (SAXS-TT) and X-ray Fluorescence Computed Tomography (XRF-CT). This approach likely brings out valuable information about the breast cancer metastasis cascade. Initial results from its application on a breast cancer specimen reveal the collective influence of key molecules in the metastatic mechanism, identifying a strong correlation between zinc accumulation (associated with matrix metalloproteinases MMPs) and highly oriented collagen. MMPs trigger collagen alignment, facilitating breast cancer cell intravasation, while iron accumulation, linked to angiogenesis and vascular endothelial growth factor VEGF, supports cell proliferation and metastasis. Therefore, these findings highlight the potential of the advanced multimodal X-ray computed tomography approach and pave the way for in-depth investigation of breast cancer metastasis, which may guide the development of novel therapeutic approaches and enable personalised treatment strategies, ultimately improving patient outcomes in breast cancer management.

Scientific Reports

2024-01-16

Vol. 14 , num. 1, p. 1448.

DOI : 10.1038/s41598-024-51945-4

Measurement of the t(t)over-bar charge asymmetry in events with highly Lorentz-boosted in collisions at √s=13 TeV

A. Tumasyan; W. Adam; J. W. Andrejkovic; T. Bergauer; S. Chatterjee et al. 

The measurement of the charge asymmetry in top quark pair events with highly Lorentz-boosted top quarks decaying to a single lepton and jets is presented. The analysis is performed using protonproton collisions at root s = 13 TeV with the CMS detector at the LHC and corresponding to an integrated luminosity of 138 fb(-1). The selection is optimized for top quarks produced with large Lorentz boosts, resulting in nonisolated leptons and overlapping jets. The top quark charge asymmetry is measured for events with a t (t) over bar invariant mass larger than 750 GeV and corrected for detector and acceptance effects using a binned maximum likelihood fit. The measured top quark charge asymmetry of (0.42(-0.69)(+0.64))% is in good agreement with the standard model prediction at next-to-next-to-leading order in quantum chromodynamic perturbation theory with next-to-leading-order electroweak corrections. The result is also presented for two invariant mass ranges, 750-900 and >900 GeV. (c) 2023 The Author(s). Published by Elsevier B.V. This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).

Physics Letters B

2023-11-10

Vol. 846 , p. 137703.

DOI : 10.1016/j.physletb.2023.137703

MarrowCellDLD: a microfluidic method for label-free retrieval of fragile bone marrow-derived cells

G. Porro; R. Sarkis; C. Obergozo; L. Godot; F. Amato et al. 

Functional bone marrow studies have focused primarily on hematopoietic progenitors, leaving limited knowledge about other fragile populations, such as bone marrow adipocytes (BMAds) and megakaryocytes. The isolation of these cells is challenging due to rupture susceptibility and large size. We introduce here a label-free cytometry microsystem, MarrowCellDLD, based on deterministic lateral displacement. MarrowCellDLD enables the isolation of large, fragile BM-derived cells based on intrinsic size properties while preserving their viability and functionality. Bone marrow adipocytes, obtained from mouse and human stromal line differentiation, as well as megakaryocytes, from primary human CD34+ hematopoietic stem and progenitor cells, were used for validation. Precise micrometer-range separation cutoffs were adapted for each cell type. Cells were sorted directly in culture media, without pre-labeling steps, and with real-time imaging for quality control. At least 106 cells were retrieved intact per sorting round. Our method outperformed two FACS instruments in purity and yield, particularly for large cell size fractions. MarrowCellDLD represents a non-destructive sorting tool for large, fragile BM-derived cells, facilitating the separation of pure populations of BMAds and megakaryocytes to further investigate their physiological and pathological roles.

Scientific Reports

2023-12-18

Vol. 13 , num. 1, p. 22462.

DOI : 10.1038/s41598-023-47978-w

Search for physics beyond the standard model in top quark production with additional leptons in the context of effective field theory

A. Hayrapetyan; A. Tumasyan; W. Adam; J. W. Andrejkovic; T. Bergauer et al. 

A search for new physics in top quark production with additional final-state leptons is performed using data collected by the CMS experiment in proton-proton collisions at root s = 13TeV at the LHC during 2016-2018. The data set corresponds to an integrated luminosity of 138 fb(-1). Using the framework of effective field theory (EFT), potential new physics effects are parametrized in terms of 26 dimension-six EFT operators. The impacts of EFT operators are incorporated through the event-level reweighting of Monte Carlo simulations, which allows for detector-level predictions. The events are divided into several categories based on lepton multiplicity, total lepton charge, jet multiplicity, and b-tagged jet multiplicity. Kinematic variables corresponding to the transverse momentum (pT) of the leading pair of leptons and/or jets as well as the pT of on-shell Z bosons are used to extract the 95% confidence intervals of the 26 Wilson coefficients corresponding to these EFT operators. No significant deviation with respect to the standard model prediction is found.

Journal Of High Energy Physics

2023-12-12

num. 12, p. 68.

DOI : 10.1007/JHEP12(2023)068

Expanding on the fundamental metallicity relation in dwarf galaxies with MUSE

T-E. Bulichi; K. Fahrion; F. Mernier; M. Hilker; R. Leaman et al. 

The mass-metallicity relation (MZR) represents one of the most important scaling relations in the context of galaxy evolution, comprising a positive correlation between stellar mass and metallicity (Z). The fundamental metallicity relation (FMR) introduces a new parameter into the dependence, namely, the star formation rate (SFR). While several studies have found that Z is anti-correlated with the SFR at a fixed mass, the validity of this statement has been questioned extensively and no widely accepted consensus has been reached thus far. With this work, we investigate the FMR in nine nearby, spatially resolved, dwarf galaxies, using gas diagnostics on integral-field spectroscopic data of the Multi Unit Spectroscopic Explorer (MUSE), pushing such investigations to lower galaxy masses and higher resolutions. We find that both the MZR and FMR exhibit different behaviours within different star-forming regions of the galaxies. We find that the SFR surface-density-and-metallicity anti-correlation is tighter in the low-mass galaxies of our sample. For all the galaxies considered, we find a SFR surface-density-and-stellar-mass surface-density correlation. We propose that the main reason behind these findings is connected to the accretion mechanisms of the gas fuelling star formation, namely: low-mass, metal-poor galaxies accrete pristine gas from the intergalactic medium, while in more massive and metal-enriched systems, the gas responsible for star formation is recycled from previous star-forming episodes.

Astronomy & Astrophysics

2023-11-15

Vol. 679 , p. A98.

DOI : 10.1051/0004-6361/202346002

Near-infrared emission line diagnostics for AGN from the local Universe to z ∼ 3

A. Calabro; L. Pentericci; A. Feltre; P. A. Haro; M. Radovich et al. 

Optical rest-frame spectroscopic diagnostics are usually employed to distinguish between star formation and active galactic nucleus (AGN) powered emission. However, this method is biased against dusty sources, hampering a complete census of the AGN population across cosmic epochs. To mitigate this effect, it is crucial to observe at longer wavelengths in the rest-frame near-infrared (near-IR), which is less affected by dust attenuation and can thus provide a better description of the intrinsic properties of galaxies. AGN diagnostics in this regime have not been fully exploited so far, due to the scarcity of near-IR observations of both AGN and star-forming galaxies, especially at redshifts higher than 0.5. Using Cloudy photoionization models, we identified new AGN – star formation diagnostics based on the ratio of bright near-IR emission lines, namely [SIII] 9530 & Aring;, [CI] 9850 & Aring;, [PII] 1.188 mu m, [FeII] 1.257 mu m, and [FeII] 1.64 mu m to Paschen lines (either Pa gamma or Pa beta), providing simple, analytical classification criteria. We applied these diagnostics to a sample of 64 star-forming galaxies and AGN at 0 <= z <= 1, and 65 sources at 1 <= z <= 3 recently observed with JWST-NIRSpec in CEERS. We find that the classification inferred from the near-IR is broadly consistent with the optical one based on the BPT and the [SII]/H alpha ratio. However, in the near-IR, we find similar to 60% more AGN than in the optical (13 instead of eight), with five sources classified as "hidden" AGN, showing a larger AGN contribution at longer wavelengths, possibly due to the presence of optically thick dust. The diagnostics we present provide a promising tool to find and characterize AGN from z = 0 to z similar or equal to 3 with low-and medium-resolution near-IR spectrographs in future surveys.

Astronomy & Astrophysics

2023-11-15

Vol. 679 , p. A80.

DOI : 10.1051/0004-6361/202347190

Observation of four top quark production in proton-proton collisions at √s=13 TeV

A. Hayrapetyan; A. Tumasyan; W. Adam; J. W. Andrejkovic; T. Bergauer et al. 

The observation of the production of four top quarks in proton-proton collisions is reported, based on a data sample collected by the CMS experiment at a center-of-mass energy of 13 TeV in 2016-2018 at the CERN LHC and corresponding to an integrated luminosity of 138 fb-1. Events with two same-sign, three, or four charged leptons (electrons and muons) and additional jets are analyzed. Compared to previous results in these channels, updated identification techniques for charged leptons and jets originating from the hadronization of b quarks, as well as a revised multivariate analysis strategy to distinguish the signal process from the main backgrounds, lead to an improved expected signal significance of 4.9 standard deviations above the background-only hypothesis. Four top quark production is observed with a significance of 5.6 standard deviations, and its cross section is measured to be 17.7+3.7-3.5 (stat)+2.3-1.9 (syst) fb, in agreement with the available standard model predictions.

Physics Letters B

2023-12-10

Vol. 847 , p. 138290.

DOI : 10.1016/j.physletb.2023.138290

AN UNSUPERVISED METHOD FOR THE DETECTION OF AND TRACKING OF TARGETS IN SPOTLIGHT MODE SAR IMAGES

S. De; K. Jensen; V. Cazcarra-Bes; N. Yague; D. Castelletti et al. 

Taking advantage of Capella’s ability to dwell on a target for an extended period of time (nominally 30s) in its spotlight (SP) mode, an unsupervised methodology for detecting moving targets in this data is presented in this paper. By colourizing short segments (sub-apertures) of the total imaging time, a colourised sub-aperture image (CSI) can be formed. This can be used in conjunction with well-established computer vision techniques to detect moving targets and track them in the SP image. In essence, the moving target detection problem is transformed from temporal image stack identification to colour segmentation in a single image. The presented detection and tracking are wholly unsupervised. Additionally, computer-vision-based tracking algorithms are demonstrated on detected movers and qualitatively assessed for accuracy of tracking.

Igarss 2023 – 2023 Ieee International Geoscience And Remote Sensing Symposium

2023-01-01

IEEE International Geoscience and Remote Sensing Symposium (IGARSS), Pasadena, CA, JUL 16-21, 2023.

p. 7206-7209

DOI : 10.1109/IGARSS52108.2023.10282645

Measurement of WBG-based power supplies

H. Zhu; A. Jafari; K. Machtinger; M. Makoschitz; E. Matioli 

This paper discusses different measurement methods to evaluate the efficiency of WBG-based power supply solutions, including electrical measurement methods and their verification with calorimetric methods, and compares the performance of Si-based and GaN-based chargers. The efficiency of chargers was measured at different load conditions, and it was observed that the maximum efficiency occurred generally at higher powers. GaN-based solutions outperformed Si-based chargers at higher power levels, leading to significant energy savings. The paper suggests that regulations for efficiency can be tighten and different voltage modes shall be included to ensure further energy savings. The benefits of using WBG devices are more evident in terms of power density, which could lead to their wider adoption in other power electronic applications.

2023 25Th European Conference On Power Electronics And Applications, Epe’23 Ecce Europe

2023-01-01

25th European Conference on Power Electronics and Applications (EPE ECCE Europe), Aalborg, DENMARK, SEP 04-08, 2023.

Switching losses in power devices: From dynamic on resistance to output capacitance hysteresis

E. Matioli; H. Zhu; N. Perera; M. S. Nikoo; A. Jafari et al. 

In this paper, we review some of the main methods to characterize on-state and off-state losses in wide-band-gap devices under switching conditions. In the off-state, we will discuss about losses related to charging and discharging the output capacitance in wide-band-gap devices, both in hard- and soft-switching. In the on-state, we will present an accurate measurement of dynamic on-resistance degradation, particularly in Gallium Nitride (GaN) devices. These losses are typically not described in data-sheets, but can be a dominant loss mechanism in power electronic applications.

2023 25Th European Conference On Power Electronics And Applications, Epe’23 Ecce Europe

2023-01-01

25th European Conference on Power Electronics and Applications (EPE ECCE Europe), Aalborg, DENMARK, SEP 04-08, 2023.

Convective regimes induced by surface cooling and topography in stratified waterbodies

H. N. Ulloa; C. L. Ramon; T. Doda; D. Bouffard 

Gravitational convection plays a significant role in the ventilation, heat and mass distribution of aquatic systems. This study investigates thermally driven convection resulting from heat loss at the air-water interface during cooling periods in freshwater environments. In the littoral zone, where the water depth increases from the shoreline to interior waters (pelagic zone), uniform heat loss at the surface generates differential cooling between shallow and deep regions. If the latter process occurs for a long enough time, the density-induced cross-shore pressure gradient may drive an overturning circulation across littoral waters, known as “thermal siphon”. This paper examines the conditions under which a thermal siphon develops in natural water bodies and its associated convective regimes. For the above setting, we derive time and velocity scales associated with the transition from Rayleigh-Benard type convection to horizontal overturning circulation across sloping basin regions. The above transition in the convective regime is characterised by a three-way horizontal momentum balance between the cross-shore pressure gradient and inertia before reaching a quasi-steady regime. Our theoretical scaling expressions are supported by high-fidelity numerical simulations and field- scale experiments, and they provide a robust conceptual framework to characterise convective flows induced by night-time or seasonal surface cooling in nearshore aquatic systems, such as lakes, reservoirs, and coastal seas.

Proceedings Of The 39Th Iahr World Congress

2022-01-01

39th IAHR World Congress on From Snow to Sea, Granada, SPAIN, JUN 19-24, 2022.

p. 5648-5655

DOI : 10.3850/IAHR-39WC2521716X20221552

Improved microfluidic transcriptome based screening methods

H. Hu; C. Merten; X. Ma; L. Kolmar 

The invention provides microfluidic screening systems for the identification of compounds or compositions influencing cellular transcriptomes. The invention is predicated upon taking into account differences in newly synthesized mRNA in contrast to so called old mRNA and such differences compared to control cell assays. The invention is applicable for screening in particular candidate ligand molecules such as antibodies for an effect on target cells, and thereby provides new strategies for the identification of therapeutically active compounds.

Patent number(s) :

  • WO2024047028 (A1)
  • EP4332234 (A1)

2024

Rapidly verifiable aggregate signatures

M. Camaioni; R. Guerraoui; M. Monti; P-L. Roman; M. Vidigueira et al. 

A method for aggregating digital signatures comprises the following steps carried out by a signature aggregator: receiving first data packages from signers, each first data package comprising a signer identifier, a payload, and a payload signature; verifying the payload signatures to determine whether or not the payloads are correctly signed; bundling correctly signed payloads into a batch; obtaining a batch digest, and proofs of inclusion of the payloads in the batch; sending second data packages comprising the batch digest and a respective proof of inclusion to the signers, the respective proof of inclusion proving that the payload of the respective signer is included in the batch; receiving third data packages from the signers, each third data package comprising the signer identifier, and a respective batch digest signature; verifying the batch digest signatures to determine whether or not the batch digests are correctly signed; aggregating correctly signed batch digest signatures to obtain an aggregated batch digest signature; and including the aggregated batch digest signature in the batch. The payload and batch digest signatures may be obtained by using different secret keys of the respective signer.

Patent number(s) :

  • WO2024062304 (A1)
  • EP4343599 (A1)

2024

The 2024 Magnonics Roadmap

B. Flebus; D. Grundler; B. Rana; Y. Otani; I. Barsukov et al. 

Magnonics is a research field that has gained an increasing interest in both the fundamental and applied sciences in recent years. This field aims to explore and functionalize collective spin excitations in magnetically ordered materials for modern information technologies, sensing applications, and advanced computational schemes. Spin waves, also known as magnons, carry spin angular momenta that allow for the transmission, storage, and processing of information without moving charges. In integrated circuits, magnons enable on-chip data processing at ultrahigh frequencies without the Joule heating, which currently limits clock frequencies in conventional data processors to a few GHz. Recent developments in the field indicate that functional magnonic building blocks for in-memory computation, neural networks, and Ising machines are within reach. At the same time, the miniaturization of magnonic circuits advances continuously as the synergy of materials science, electrical engineering, and nanotechnology allows for novel on-chip excitation and detection schemes. Such circuits can already enable magnon wavelengths of 50 nm at microwave frequencies in a 5G frequency band. Research into non-charge-based technologies is urgently needed in view of the rapid growth of machine learning and artificial intelligence applications, which consume substantial energy when implemented on conventional data processing units. In its first part, the 2024 Magnonics Roadmap provides an update on the recent developments and achievements in the field of nano-magnonics while defining its future avenues and challenges. In its second part, the Roadmap addresses the rapidly growing research endeavors on hybrid structures and magnonics-enabled quantum engineering. We anticipate that these directions will continue to attract researchers to the field and, in addition to showcasing intriguing science, will enable unprecedented functionalities that enhance the efficiency of alternative information technologies and computational schemes.

Journal of Physics: Condensed Matter

2024

DOI : 10.1088/1361-648X/ad399c

129Xe Dynamic Nuclear Polarization Demystified: The Influence of the Glassing Matrix on the Radical Properties

E. Wiström; J-N. Hyacinthe; T. P. Lê; R. Gruetter; A. Capozzi 

129Xe dissolution dynamic nuclear polarization (DNP) is a controversial topic. The gold standard technique for hyperpolarized xenon magnetic resonance imaging (MRI) is spin exchange optical pumping, which received FDA approval in 2022. Nevertheless, the versatility of DNP for enhancing the signal of any NMR active nucleus might provide new perspectives for hyperpolarized 129Xe NMR/MRI. Initial publications about 129Xe DNP underlined the increased complexity in the sample preparation and lower polarization levels when compared to more conventional 13C-labeled molecules, at same experimental conditions, despite very close gyromagnetic ratios. Herein, we introduce, using a Custom Fluid Path system, a user-friendly and very robust sample preparation method. Moreover, investigating the radical properties at real DNP conditions by means of LOngitudinal Detected Electron Spin Resonance, we discovered a dramatic shortening of the electron spin longitudinal relaxation time (T1e) of nitroxyl radicals in xenon DNP samples’ matrices, with respect to more commonly used water:glycerol ones. Mitigating those challenges through microwave frequency modulation, we achieved over 20% 129Xe polarization without employing any deuterated solvent.

The Journal of Physical Chemistry Letters

2024

Vol. 15 , num. 11, p. 2957-2965.

DOI : 10.1021/acs.jpclett.4c00177

Design of a Flexure-Based Flywheel for the Storage of Angular Momentum and Kinetic Energy

P. R. Flückiger; F. Cosandier; H. P-M. B. Schneegans; S. Henein 

The flywheel is a widespread mechanical component used for the storage of kinetic energy and angular momentum. It typically consists of cylindrical inertia rotating about its axis on rolling bearings, which involves undesired friction, lubrication, and wear. This paper presents an alternative mechanism that is functionally equivalent to a classical flywheel while relying exclusively on limited-stroke flexure joints. This novel one-degree-of-freedom zero-force mechanism has no wear and requires no lubrication: it is thus compatible with extreme environments, such as vacuum, cryogenics, or ionizing radiation. The mechanism is composed of two coupled pivoting rigid bodies whose individual angular momenta vary during motion but whose sum is constant at all times when the pivoting rate is constant. The quantitative comparison of the flexure-based flywheel to classical ones based on a hollow cylinder as inertia shows that the former typically stores 6 times less angular momentum and kinetic energy for the same mass while typically occupying 10 times more volume. The freedom of design of the shape of the rigid bodies offers the possibility of modifying the ratio of the stored kinetic energy versus angular momentum, which is not possible with classical flywheels. For example, a flexure-based flywheel with rigid pivoting bodies in the shape of thin discs stores 100 times more kinetic energy than a classical flywheel with the same angular momentum. A proof-of-concept prototype was successfully built and characterized in terms of reaction moment generation, which validates the presented analytical model.

Machines

2024-03-30

Vol. 12(4) , num. 232, p. 21 pages.

DOI : 10.3390/machines12040232

New Polymers from Biomass-Derived Hydroxycinnamic Acid Derivatives

G. Tekleab / Director(s) : H-A. Klok 

Polymers play a central role in shaping our world across various fields, but their heavy reliance on petrochemicals poses climate change, environmental and health risks. To address and alleviate these issues, transitioning to sustainable polymers, sourced from renewable materials such as lignocellulosic biomass, is crucial. Over 100 million tons of lignin is generated annually from the pulp and paper industry, often incinerated as waste. This leads to a growing interest within research communities to explore the valorization of lignin. One promising approach involves depolymerization of lignin under various conditions to produce valuable aromatic building blocks. Apart from lignin, hemicellulose, vegetable oils and fruits serve as another valuable biological sources for different building blocks. Among these building blocks, hydroxycinnamic acid derivatives are particularly interesting, primarily because of their accessibility from a variety of biological sources. The focus of this Thesis is to exploit the chemistry of hydroxycinnamic acid derivatives for the synthesis of different classes of polymers. In Chapter 1, an in-depth overview is provided that discusses the varied biological sources of hydroxycinnamic acid derivatives, including lignin, hemicellulose, and vegetable oils. This chapter details the incorporation of these fundamental building blocks within biopolymers and provides a comprehensive overview of their isolation processes. Furthermore, a systematic review of the existing literature is presented with a nuanced understanding of the diverse polymers derived from hydroxycinnamic acids. Chapter 2 explores the synthesis of a novel poly(ether carbonate) from hydroxycinnamic acid derivatives. Hydroxycinnamic acid derivatives will be used to generate symmetric diols, which serve as monomers for the synthesis of diverse poly(ether carbonate)s. The resulting polymers undergo successful depolymerization using protic salts, demonstrating the viability of a chemical recycling method. This process of polymerization and depolymerization is executed for four cycles, showcasing the robustness of the chemical recycling approach. Chapter 3 investigates the synthesis of a series of new class of poly(ether ester urea)s. The monomers used in this part are prepared from the symmetric diols obtained in Chapter 2, which are converted into diamines, which are used for the synthesis of poly(ether ester urea)s. Unlike the traditional synthesis of poly(ester urea)s, which typically involves the use of toxic reagents such as triphosgene derivatives, our approach utilized the environmentally friendly carbonate source, dimethyl carbonate. The impact of various parameters was systematically investigated including temperature, catalyst and reaction time on molecular weight. While optimized conditions demonstrate successful polymer production of these polymers, further refinement is essential for achieving higher molecular weight polymers. In Chapter 4, the synthesis of poly(ether carbonate)s using biomass-derived diester derivatives and biobased 1,6-hexanediol is reported. The chemical recycling of the resulting polymers is explored. The chemically recycled diester derivatives were investigated into two different ways: firstly, these building blocks were repolymerized under the same polymerization conditions; secondly, the diester derivatives were reduced to diols, which are then utilized for synthesizing another class of poly(ether ester)s.

Lausanne: EPFL

2024

p. 255.

DOI : 10.5075/epfl-thesis-10357

Extensions of Peer Prediction Incentive Mechanisms

A. J. Richardson / Director(s) : B. Faltings 

As large, data-driven artificial intelligence models become ubiquitous, guaranteeing high data quality is imperative for constructing models. Crowdsourcing, community sensing, and data filtering have long been the standard approaches to guaranteeing or improving data quality. The underlying theory, mainly incentive mechanism design, is often limited in its scope of applicability. A subset of incentive mechanisms designed to handle unverifiable or inherently subjective data – Peer Prediction mechanisms – is generally only applicable to settings where the data signal comes from a discrete distribution. In this thesis, we expand the scope of applicability of Peer Prediction mechanisms in two parts. In the first part, we address a constrained extension of Peer Prediction that is applicable to machine learning. A data collecting entity, known as a Center, may not need to learn a joint distribution of (x,y) pairs. It may only need to learn a parameterized model that minimizes a loss function on the joint distribution. We analyze a statistical measure known as Influence, which can be interpreted as a form of Peer Prediction. We will show that the Peer Truth Serum (PTS) is a special case of Influence, and that Influence has desirable game-theoretic properties as an incentive mechanism. We then take the analysis of Influence into the regime of data filtering, which is uniquely challenging compared to crowdsourcing. We use asymptotic analysis to show that, in the limit of infinite samples, the ability to filter training data using Influence is constrained by the degree of corruption in the validation data. However, finite sample analysis reveals that one can exceed the quality of the validation data if conditions are met regarding higher moments of the data models. In the second part, we move on from this more constrained extension to the most general extension of Peer Prediction: learning arbitrary distributions. Many crowdsourcing problems involve absolutely continuous distributions, such as Gaussian distributions. The standard approach is to discretize the space and apply a discrete Peer Prediction mechanism. This approach has numerous issues: coarse discretizations result in inaccurate approximations of the distribution and loose incentives, while fine discretizations result in volatile payments, which tend to fail in real world applications. We expand the theory of Peer Prediction, rather than seek a better implementation of current theory. We consider two approaches. In the first approach, one can discretize the space, which we call partitioning into bins, but pick from a set of partitions rather than just one. In this regime, the notion of peer matching in Peer Prediction is generalized with the concept of Peer Neighborhoods. With a reasonable strengthening of the Agent update condition, we obtain a valid extension of the PTS on arbitrary distributions. The partitioning approach for arbitrary distributions reveals a more precise theory. By changing perspective from partitioning according to the Lebesgue measure on the space of reports to partitioning according to the public probability measure, we obtain a payment function that doesn’t rely on discretization. Using this function as the basis for a mechanism, a Continuous Truth Serum, reveals solutions to other underlying problems with Peer Prediction, such as the unobserved category problem.

Lausanne: EPFL

2024

p. 145.

DOI : 10.5075/epfl-thesis-9803

The microbial genomics of glacier-fed streams: adaptations to an extreme ecosystem

M. Bourquin / Director(s) : T. I. Battin 

Glacier-fed streams are the cold, ultra-oligotrophic, and unstable streams that are fed by glacial meltwater. Despite these extreme conditions, they harbour a diverse and abundant microbial diversity that develops into biofilms, covering the boulders and sediments that form the streambed. These biofilms play key roles in ecosystem processes and exert a direct influence on downstream biogeochemistry. Here we aim to define the genomic potential of glacier-fed stream microbial communities using metagenomic analyses. As a reference point, we first present a global inventory of cryospheric microbiomes, and find shared taxonomic, functional and phylogenetic features that shape the bacterial communities globally. However, we also denote how these ecosystems remain understudied, and thus further work is required to characterise fully the microbiome of cryospheric ecosystems. Using the dataset of metagenomes generated by the Vanishing glaciers project, we then unravel strategies that microbes developed to thrive in the harsh environmental conditions of glacier-fed streams, including the importance of biofilm formation and cross-domain interactions. Moreover, using metagenome-assembled genomes, we find a unique phylogenomic diversity that harbours distinct genomic features. Limited knowledge exists on how glacier influence shapes bacterial communities in glacier-fed streams. However, improving our understanding is crucial to better forecast how climate change will affect this extreme, yet endangered ecosystem. Using the global dataset of metagenomes and environmental parameters collected by the Vanishing glaciers project, we shed new light on the future of the glacier-fed stream microbiome. We first project environmental parameters onto future scenarios of climate change using predicted changes in glaciology and climate. These predictions corroborate conceptual models that forecast the “greening” of glacier-fed streams, and we further link this process with glacier size. Moreover, using a modelling approach and environmental, glaciological, and climatic variables as covariates, we forecast the changes in abundance of 2333 strains at a global scale. These models predict ecological shifts associated with the phylogenetic structure of the microbiome. Additionally, we find an association between these forecasted changes and the functional potential of these genomes, but also their genomic bulk features. This altered microbiome is expected to play a more important role in future glacier-fed streams, particularly in carbon cycling. To better understand how glacier-fed stream microbial genomes are shaped by glacier influence, we create a new method that identifies phylogenetic clades that drive this relationship. This approach allows us to identify genomic optimisation patterns along the gradient of glacier influence, highlighting the importance of Gammaproteobacteria in shaping the genomic landscape of glacier-fed streams. Overall, this work serves as a reference resource for climate change microbiology, by providing a global dataset of cryospheric microbiomes, a modelling framework that allows to forecast the abundance of bacterial strains, and other methods to analyse microbiomes in a changing environment. Owing to human-induced climate change, the cryosphere is rapidly shrinking. Thus, targeted efforts are still required to unravel the threatened biodiversity of cryospheric ecosystems, and anticipate potential changes in ecosystem functioning.

Lausanne: EPFL

2024

p. 276.

DOI : 10.5075/epfl-thesis-10795

III-N blue-emitting epi-structures with high densities of dislocations: Fundamental mechanisms for efficiency improvement and applications

P. C. Lottigier / Director(s) : N. Grandjean 

Since the dawn of humanity, human beings seeked to light their surroundings for their well-being, security and development. The efficiency of ancient lighting devices, e.g. oil lamps or candles, was in the order of 0.03-0.04% and jumped to 0.4-0.6% with the use of gas during the first industrial revolution. Electricity allowed to reach 3-4% efficiency with incandescent bulbs, which contextualises the importance taken by III-nitrides (III-Ns) when > 10% external quantum efficiency (EQE) light-emitting diodes (LEDs) were first demonstrated in the 1990s. Nowadays, this technology is mature and state-of-the-art devices show > 80% EQE. This was only made possible through multidisciplinary research in the fields of semiconductor materials science, optics and photonics, and electronics. Of high interest is that such high efficiencies were obtained after numerous trial-and-error growth iterations, and we are still on the way to understand the intricacies of the underlying physics. For the present work, we choose the Si(111) platform to grow thin III-N epilayers containing blue-emitting InGaN/GaN quantum wells (QWs). These systems present high threading dislocation (TD) densities > 10^10 cm^-2 which make them an ideal testbed for investigating the impact of point defects (PDs) versus TDs on the internal quantum efficiency (IQE). By using the common In-containing underlayer (UL) mitigation strategy of burying the deleterious PDs below the QW, we have control on their density in the active region. We first perform various mesoscopic photoluminescence (PL) measurements giving quantitative and comparative efficiency assessments for samples with and without a consequent density of ~ 10^9 cm^-2 PDs. Our findings emphasize the importance of these defects, even when the TD density outscales the PD density by one order of magnitude. We then employ high resolution (~ 60 nm) cathodoluminescence (CL) tools to investigate the detrimental impact of PDs at the nanoscale. As suggested by scanning electron and atomic force microscopy, we discover that instead of being infinite two-dimensional landscapes featuring random energy variations, QWs are concatenated growth grain domains. This new, nuanced view was confirmed by time-resolved CL measurements, offering a deeper insight into the physical processes at play in InGaN/GaN QWs. We finally design and fabricate applicative demonstrator devices such as suspended membrane photonic crystal nanobeam lasers and microcavity LEDs, paving the way toward efficient and versatile integrated silicon photonics. The outcomes of this work enlighten the impact of point defects in the regime of high dislocation density. By delving deeper into this unexpected finding, nanoscale studies and experiments reshape our understanding of QWs properties.

Lausanne: EPFL

2024

p. 144.

DOI : 10.5075/epfl-thesis-10688

Spinel Protective Coatings for Solid Oxide Cell (SOC) Interconnects (ICs)

S. Daviran / Director(s) : J. Van Herle; P. Bowen 

Abstract The degradation of metal interconnects (ICs) in Solid Oxide Cells (SOCs) primarily results from chromium (Cr) oxide scale growth on stainless-steel substrates, causing ohmic loss and air-side electrode poisoning by Cr. This thesis addresses these challenges by studying the degradation of AB2O4 spinel-coated ICs to enhance protection against Cr diffusion. The research employed four strategies: coating method development, material substitution in the spinel structure, Accelerated Stress Tests (AST) as short-term corrosion aging tests, and an oxidation kinetic study of long-term in-situ aged ICs, up to 40,000 hours of aging. As method development, ink-jet printing (IJP) was used to deposit protective coatings. As a wet-based method, the primary challenge was in formulating highly loaded particulate colloids to achieve sufficiently dense coatings. This induced complexity due to changes in interparticle interactions and an increased risk of particle agglomerations, potentially leading to printing nozzle blocking. Therefore, the focus was on developing a well-dispersed, stable, and agglomerate-free colloid, capable of achieving dense, uniform, and full-surface coverage protective layers. This colloidal stability was achieved using polyacrylic acid as a dispersant, through colloidal characterization and interparticle force modeling. Additionally, magnetron sputtering was used for comparison and for its capability to produce highly dense and uniform coatings, with the idea to evaluate grain boundary diffusion pathways of Cr diffusion. In terms of materials, the research explored substituting cobalt (Co) with copper (Cu) in Mn-Co-based spinel, driven by Cu’s favorable thermophysical properties. This was conducted through thermodynamic evaluation and oxidation kinetic studies, including both short-term and long-term corrosion aging tests. Despite promising results in the literature regarding the short-term effectiveness of Cu-based spinels, the current findings revealed that this substitution does not meet the required durability standards for protective coatings. This is primarily due to Cu’s high diffusivity and mobility, especially in its interaction with Cr. The study also involved degradation analysis of long-term operated ICs (40,000 hours), particularly with Fe-doped (MnCo)3O4 spinel coating. Special focus was given to studying the steel (scale)-coating interface, with the aim to understand the interactions of Cr scale and the spinel coating as well as identifying the dominant mechanisms of Cr diffusion. In the AST tests, the study focused on assessing how temperature and humidity could potentially accelerate degradation. The study evaluated the reliability of ASTs, particularly regarding changes in diffusion mechanisms under these conditions, and attempted to correlate AST findings with long-term real stack test behaviors. Based on the conducted studies, the findings provide valuable insights into the mechanism of Cr diffusion through spinel coatings. A key outcome is that ionic pathways play a predominant role, diminishing the significance of grain boundary diffusion. This understanding suggests a shift in focus towards enhancing the ionic resistance of spinel coatings, rather than concentrating on developing dense coatings, as a strategy for improving their effectiveness. This outcome opens new paths for the advancement of more robust and efficient protective coatings, thereby enhancing the durability of SOC interconnects.

Lausanne: EPFL

2024

p. 202.

DOI : 10.5075/epfl-thesis-10655

Electric-field-induced second-order nonlinear processes in stoichiometric silicon nitride

B. Zabelich / Director(s) : C. S. Brès 

Nonlinear optical frequency conversion is one of the driving research areas in photonics. Its quasi instantaneous response and the promise of low power consumption in integrated structures could cover the demand for fast signal processing with minimal energy loss. Frequency conversion based on four-wave-mixing takes place in any material independently from its structure. However, second-order nonlinear processes such as difference and sum-frequency generation unlock a range of applications including f-2f self-referencing scheme for the carrier-envelope offset detection for femtosecond laser stabilization or spontaneous parametric down-conversion for the generation of entangled photon-pairs in quantum computing. Unfortunately, most of the CMOS compatible materials do not possess second-order susceptibility due to their centrosymmetric nature. Recently we showed that all-optical poling of silicon nitride waveguides provides a versatile method for symmetry breaking while not requiring any dedicated extra fabrication steps. Due to the photogalvanic mechanism of grating inscription, the quasi-phase-matching (QPM) condition is fulfilled spontaneously between the pump and its second harmonic (SH). In addition, the wavevector associated with the inscribed grating could be leveraged to satisfy the QPM condition in other three-wave processes. It, however, requires the precise control of the waveguide dispersion and the selection of the appropriate pump wavelength in all-optical poling. The goal of this work is the practical application of the second-order nonlinear processes enabled by all-optical poling. My recent work shows that bandwidth engineering and temperature tunability facilitate the observation of the near degenerative difference frequency generation (DFG). We prove that the parameters of the inscribed grating extracted from the SH QPM spectra allow us to predict the conversion efficiency and bandwidth of the generated DFG idler, reaching a conversion efficiency of 0.9 %/W. Also, I demonstrate the advantage of group velocity matching (GVM) of the pump and its second harmonic by the proof-of-concept frequency carrier-envelope offset detection in the standard f-2f scheme. QPM and GVM lead to the efficient SHG in the pulsed regime and result in beating between the second harmonic and the dispersive wave generated by an engineered supercontinuum. The obtained signal-to-noise ratio is sufficient for ensuring frequency comb stabilization without phase slips.

Lausanne: EPFL

2024

p. 130.

DOI : 10.5075/epfl-thesis-10607

Novel Alkynylation Methods through the Combination of Hypervalent Iodine Reagents and Alkynyl-trifluoroborate Salts

J. A. Borrel / Director(s) : J. Waser 

The alkyne motif is a versatile functional group often encountered in organic chemistry. It can be involved in various transformations such as the alkyne-azide cycloaddition and has found widespread application in medicinal chemistry, chemical biology and material science. The introduction of alkynes to organic molecules is often carried out from terminal alkynes by taking advantage of their acidic C-H bonds. Under basic conditions they can form lithium or transition-metal acetylides that can react with electrophiles. In recent years, the use of alkynyl-trifluoroborate salts as bench-stable nucleophilic alkynes has become an alternative approach. In addition, the last decades saw the development of reagents bearing electrophilic alkynes, allowing the introduction of triple bonds at previously inaccessible positions due to the original polarity mismatch. Ethynylbenziodoxolones (EBX), a class of hypervalent iodine reagents bearing an alkyne, have been particularly successful for this application and are nowadays routinely used. The first objective of this thesis was to develop a novel method for the synthesis of EBX reagents to facilitate their application. By using tosyloxybenziodoxolone in combination with alkynyl-trifluoroborate salts, EBXs could be formed in high yields and purity without purification. Those conditions allowed to by-pass the isolation of the reagents and to involve them directly into one-pot two-step transformations. Both polar and radical reactions were applied to this process, affording a variety of alkynylated products. Moreover, the purification-free synthesis of EBXs was used for the copper-catalyzed alkynylation of azadipeptides. The second goal of the thesis, resulting from the one-pot two-step process, was to develop the elusive acyl-EBXs. Starting from ynone-trifluoroborate salts, acyl-EBXs could be formed in solution and reacted with thiols to afford ketene dithioacetals. Both alkyl- and aryl-thiols were compatible, the latter giving access to ketene dithioarylacetals, a class of reagent scarcely explored due to a lack of synthetic access. The products could be further transformed into a variety of S-substituted heterocycles. Finally, we investigated the reactivity of alkynyl-BF3Ks to perform nucleophilic alkynylations. Taking advantage of their stability under radical conditions we developed an azido-alkynylation of alkenes using a radical-polar crossover strategy. Under photoredox catalysis and using azidobenziodazolone (ABZ) as an azide radical source, a large variety of styrenes and vinyl-substituted heterocycles could be azido-alkynylated to afford homopropargylic azides. This method tolerates different alkynyl-BF3Ks bearing alkyl- and aryl-substituents. The homopropargylic azides obtained were further transformed into bioactive homopropargylicamines or pyrroles. The reaction is proposed to occur via an overall redox-neutral radical-polar crossover mechanism. In the end, we developed 2 main types of transformation using alkynyl-BF3K. First, their reaction in a one-pot two-step alkynylation process, which simplified the application of EBXs and allowed the generation of new reagents. Second, their use as stable nucleophilic alkynes in a novel radical azido-alkynylation reaction.

Lausanne: EPFL

2024

p. 292.

DOI : 10.5075/epfl-thesis-10492

Characterization of low-temperature plasmas generated by dielectric barrier discharges for bacterial inactivation

L. Ibba / Director(s) : I. Furno 

Low-temperature plasmas (LTPs) at atmospheric pressure hold great promise for disinfection and sterilization applications. When compared to traditional sterilization technologies like autoclaving, LTPs may offer several benefits, including reduced energy consumption, lower operational temperature, absence of high pressure or vacuum requirements, shorter treatment times, and the absence of persistent hazardous compounds. Nevertheless, the understanding of the physics and chemistry of LTPs is still incomplete due to the numerous variables at play, particularly in air at atmospheric pressure. The aim of this dissertation is to improve the comprehension of the mechanisms responsible for bacterial inactivation in atmospheric pressure LTPs by conducting a thorough physical, chemical, and biological characterization. Special attention is given to performing measurements under conditions identical to those of biological treatments, addressing the often overlooked influence of the biological target on the plasma discharge. To examine the effects of indirect plasma treatments on \emph{E. coli} an atmospheric pressure surface dielectric barrier discharge (SDBD) plasma in air, powered by a nanosecond pulse generator, is employed. The treatments demonstrate bacterial inactivation up to 4-log reductions after 10 minutes of plasma exposure. In-situ FTIR spectroscopy reveals the presence of O$_3$, NO$_2$, N$_2$O, and N$_2$O$_5$, while laser-induced fluorescence (LIF), employing a picosecond laser, is used to measure the kinetics of NO produced in the plasma on a two-dimensional area in front of the DBD surface. The results show a correlation between the concentration of reactive oxygen and nitrogen species (RONS) with the relative humidity (RH) and with the plasma discharge power, measured using Lissajous figures. The results suggest that NO is not a main factor contributing to the inactivation of \emph{E. coli} in the plasma treatments examined in this study. To investigate direct plasma treatments, \emph{Bacillus subtilis} spores on monolayer membranes are treated using a nanosecond volume DBD (VDBD) plasma at atmospheric pressure in humid air, reaching complete inactivation with >5-log reductions after 1 minute of plasma exposure. The membranes are treated in the VDBD plasma discharge on the ground side and on the high-voltage side, showing no difference in the treatment results. Both in-situ FTIR and NO LIF are performed on this setup, showing the presence of O$_3$, N$_2$O, and $\sim$1 ppm of NO temporally decaying in between plasma discharges. To evaluate the impact of the electric field in direct plasma treatments, measurements of electric field induced second harmonic (EFISH) generation using a picosecond and a nanosecond laser are performed. The ps EFISH measurements, owing to the improved temporal and spatial resolution, reveal features previously undetected by the ns EFISH measurements, including a different electric field evolution depending on the position in the plasma discharge. To understand the mechanisms of the nanosecond plasma breakdown in humid air, a comparison with a simplified kinetic model has been carried out. The results provide insights on the ion and electron kinetics, revealing differences with previously studied nitrogen plasmas and highlighting the importance of electronegative species in the breakdown dynamics. Finally, preliminary tests for achieving sterilization standards are performed.

Lausanne: EPFL

2024

p. 244.

DOI : 10.5075/epfl-thesis-10375

Silicon CMOS and InGaAs(P)/InP SPADs for NIR/SWIR detection

U. Karaca / Director(s) : E. Charbon 

Applications demanding imaging at low-light conditions at near-infrared (NIR) and short-wave infrared (SWIR) wavelengths, such as quantum information science, biophotonics, space imaging, and light detection and ranging (LiDAR), have accelerated the development of NIR/SWIR single-photon detectors. Up to date, there have been various detector types performing single-photon detection at infrared wavelengths. Among them, single-photon avalanche diodes (SPADs) have gained significant attention thanks to their low noise near room temperature (< 100 cps), high detection efficiencies (> 50%), and low timing jitter (< 100 ps). In addition, the integration of SPADs with standard CMOS technologies has paved the way for the design of low-cost, large pixel arrays with embedded photon-counting and timestamping circuitry. For detection at NIR/SWIR, Si CMOS and InGaAs(P)/InP-based SPADs appear as the most promising material systems. Si CMOS has the advantage of yielding low noise and integrating SPADs with on-chip readout circuits; however, the low absorption coefficient towards NIR is a bottleneck to enhancing detection efficiencies. In this sense, the wide depletion region approach was investigated in this work by designing SPADs in a 110 nm CIS technology with a 10 um active diameter. The implemented techniques of doping compensation and double multiplication region showed that the former can be utilized to extend depletion region widths, whereas the latter increases the total avalanche breakdown probability in a wide depletion SPAD, leading to high NIR efficiencies at a relatively lower breakdown voltage. In the fabricated SPADs with doping compensation, 7.3% PDP and 68 ps timing jitter at 850 nm and 5 Vex were achieved under the noise of 962 cps. Thanks to a fully substrate-non-isolated structure with graded substrate doping and enhanced breakdown probabilities, 25.5% PDP at 850 nm and 5.5 Vex were obtained in the device with the double multiplication region with a 295 cps noise, all at room temperature. However, the jitter at 850 nm was deteriorated to 236 ps due to many detected diffused carriers creating a diffusion peak in the timing histogram. InGaAs(P)/InP-based SPADs were also designed, fabricated, and characterized, targeting 1.06 um and 1.55 um wavelengths. Planar device structures based on double zinc diffusions were implemented to define the active and guard ring regions of the SPADs. A comprehensive study was conducted via TCAD simulations to adjust the multiplication region thickness and the depth difference between two diffusions, which allowed for optimization of noise and active area uniformity. The numerical study also enabled the removal of floating guard rings, shrinking pixel sizes for future array implementation. The noise of a 10 um device with an InGaAsP absorber and a 1.5 um multiplication region at 5 Vex was 14.1 kcps, 5.5 kcps, and 2.75 kcps at 273K, 253K, and 225K, respectively, at 10 kHz frequency and 100 ns gate-on time. It was shown that the maximum operating frequency can be increased up to 200 kHz without suffering from the afterpulsing effect near room temperature. The PDP can be increased up to 36% at 9 Vex and 1060 nm wavelength, and the jitter was reduced to 118.4 ps at 5 Vex and 1060 nm. A 10 um SPAD with an InGaAs absorber and 1.5 um multiplication region achieved 20% PDP at 1550 nm and 61 kcps noise, both at 6 Vex. The jitter of this device was 123 ps at 1550 nm and 5 Vex.

Lausanne: EPFL

2024

p. 167.

DOI : 10.5075/epfl-thesis-10282

Migration distance from birthplace and its association with relative income and employment share among heterosexual couples in Switzerland

G. Viry; G. Drevon; F. Masse; J-A. Gauthier; V. Kaufmann et al. 

Among heterosexual couples, employment of the female partner may suffer from household migration often driven by the job of the male partner. Most research has traditionally focused on the distance moved after couple formation and has neglected how far partners live from their birthplaces. Recent life course research has shown that staying in, leaving or returning to the place of origin of one or both partners often reflects couples’ work–family arrangements. This study contributes to this literature by examining the division of employment between partners and their relative contribution to household income according to migration distances. We analyse data from a national sample of economically active individuals living with heterosexual partners in Switzerland. When controlling for selectivity of migrant couples, the analysis confirms that long-distance household migration benefits men’s relative earnings. Among couples who migrated within the same region, employment is more equally shared between partners than among other couples, including nonmigrant couples. The relative distance to birthplaces also matters. Women’s contribution to household income is higher among couples in which men migrated close to women’s birthplace and is lower among couples where women migrated close to men’s birthplace compared to women in other couples. This study suggests that future research on household migration should consider important social ties and places beyond the ‘last family move’ and the mechanisms by which these ties and places influence couples’ decisions about where to live together and economic outcomes.

Population, Space and Place

2024-03-31

p. 1-17.

DOI : 10.1002/psp.2773

Methods to assess the carbon footprint of structures involving UHPFRC elements

N. J. Bertola; A. Hochuli; E. Brühwiler 

The development of Ultra-High Performance Fibre-Reinforced Cementitious Composite (UHPFRC) has enabled the design of lightweight constructions. Although the greenhouse gas emissions of UHPFRC per volume are higher than that of conventional concrete, its use reduces the required amount of material in structures. As UHPFRC is waterproof under service conditions, this material also enhances the durability of structures, significantly decreasing the need for maintenance throughout the service duration. Hence, a cradle-to-grave analysis at the project level is crucial to assess the environmental impact of structural designs. This study proposes a method to evaluate the ecological footprint of structural designs made of UHPFRC using three different time horizons: construction, maintenance, and elimination. The environmental impacts of design alternatives in UHPFRC and conventional concrete are compared using two case studies. The findings indicate that UHPFRC structures lead to a significant decrease in the environmental impacts over the service duration, offering promising results for sustainable construction.

Ultra-High Performance Concrete and High Performance Building Materials for Sustainable Construction, Proceedings of HiPerMat 2024

2024-03-08

6th International Symposium on Ultra-High Performance Concrete and High Performance Building Materials for Sustainable Construction, Kassel, Germany, March 6-8, 2024.

p. 1-308

DOI : 10.17170/kobra-202402059519

Timelapse: Rhone mouth in Geneva Lake – 2017

V. Kindschi 

The dataset is a collection of RGB and thermal images of the Rhone mouth in Geneva Lake, taken every minute in 2017.

2023

In Situ Synthesis of CuxO/N Doped Graphdiyne with Pyridine N Configuration for Ammonia Production via Nitrate Reduction

J. Li; R. Valenza; S. Haussener 

Electroreduction of nitrate to ammonia provides an interesting pathway for wastewater treatment and valorization. Cu-based catalysts are active for the conversion of NO3− to NO2− but suffer from an inefficient hydrogenation process of NO2−. Herein, CuxO/N-doped graphdiyne (CuxO/N-GDY) with pyridine N configuration are in situ prepared in one pot. Benefiting from the synergistic effect of pyridinic N in GDY and CuxO, the prepared CuxO/N-GDY tested in a commercial H-cell achieved a faradaic efficiency of 85% toward NH3 at -0.5 V versus RHE with a production rate of 340 µmol h−1 mgcat−1 in 0.1 M KNO3. When integrating the CuxO/N-GDY in an anion exchange membrane flow electrolyzer, a maximum Faradaic efficiency of 89% is achieved at a voltage of 2.3 V and the production rate is 1680 µmol h−1 mgcat−1 at 3.3 V in 0.1 M KNO3 at room temperature. Operation at 40 °C further promoted the overall reaction kinetics of NO3− to NH3, but penalized its selectivity with respect to hydrogen evolution reaction. The high selectivity and production rate in this device configuration demonstrate its potential for industrial application.

Small

2024

DOI : 10.1002/smll.202310467

Optimal blade pitch control for enhanced vertical-axis wind turbine performance

S. Le Fouest; K. Mulleners 

Vertical-axis wind turbines are great candidates to enable wind power extraction in urban and off-shore applications. Currently, concerns around turbine efficiency and structural integrity limit their industrial deployment. Flow control can mitigate these concerns. Here, we experimentally demonstrate the potential of individual blade pitching as a control strategy and explain the flow physics that yields the performance enhancement. We perform automated experiments using a scaled-down turbine model coupled to a genetic algorithm optimiser to identify optimal pitching kinematics at on- and off-design operating conditions. We obtain two sets of optimal pitch profiles that achieve a three-fold increase in power coefficient at both operating conditions compared to the non-actuated turbine and a 77% reduction in structure-threatening load fluctuations at off-design conditions. Based on flow field measurements, we uncover how blade pitching manipulates the flow structures to enhance performance. Our results can aid vertical-axis wind turbines increase their much-needed contribution to our energy needs.

Nature Communications

2024

Vol. 15 , p. 2770.

DOI : 10.1038/s41467-024-46988-0

Transitions: que faire de la mobilité dans l’architecture?

V. Kaufmann 

Cycle de conférences local/global, ENSA Toulouse, 28 mars 2024.